CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 348 & Codon = taT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4348Y348YY3111YsyntaCtaT3265326519596-9598

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4348Y348YtaCtaT32653265All0.000624
ORF1ab/nsp4348Y348YtaCtaT22262226B.1.1.70.001993
ORF1ab/nsp4348Y348YtaCtaT188188A.60.964103
ORF1ab/nsp4348Y348YtaCtaT160160B.1.617.20.000602
ORF1ab/nsp4348Y348YtaCtaT115115AY.390.002842
ORF1ab/nsp4348Y348YtaCtaT6161Q.80.010059
ORF1ab/nsp4348Y348YtaCtaT4646AY.40.000072
ORF1ab/nsp4348Y348YtaCtaT3838AY.430.000168
ORF1ab/nsp4348Y348YtaCtaT2929B.10.000266
ORF1ab/nsp4348Y348YtaCtaT2828B.1.20.000247
ORF1ab/nsp4348Y348YtaCtaT2626B.1.400.509804
ORF1ab/nsp4348Y348YtaCtaT1919P.1.140.000908
ORF1ab/nsp4348Y348YtaCtaT1515B.1.4290.000353
ORF1ab/nsp4348Y348YtaCtaT1414AY.9.20.000514
ORF1ab/nsp4348Y348YtaCtaT1414B.1.10.000254
ORF1ab/nsp4348Y348YtaCtaT1010AY.250.00006
ORF1ab/nsp4348Y348YtaCtaT1010AY.440.000061
ORF1ab/nsp4348Y348YtaCtaT1010AY.70.00196
ORF1ab/nsp4348Y348YtaCtaT1010B.1.1600.000312
ORF1ab/nsp4348Y348YtaCtaT1010R.10.0009
ORF1ab/nsp4348Y348YtaCtaT99Q.30.001305
ORF1ab/nsp4348Y348YtaCtaT88AY.1030.00005
ORF1ab/nsp4348Y348YtaCtaT88B.1.2580.000532
ORF1ab/nsp4348Y348YtaCtaT88P.10.000126
ORF1ab/nsp4348Y348YtaCtaT77AY.290.00011
ORF1ab/nsp4348Y348YtaCtaT77B.1.1.2140.000388
ORF1ab/nsp4348Y348YtaCtaT66AY.200.000233
ORF1ab/nsp4348Y348YtaCtaT66AY.270.000388
ORF1ab/nsp4348Y348YtaCtaT66B.1.1.100.006689
ORF1ab/nsp4348Y348YtaCtaT66B.1.1770.000079
ORF1ab/nsp4348Y348YtaCtaT55AY.1000.00023
ORF1ab/nsp4348Y348YtaCtaT55AY.1020.000133
ORF1ab/nsp4348Y348YtaCtaT55AY.880.004421
ORF1ab/nsp4348Y348YtaCtaT55B.1.1.4640.007364
ORF1ab/nsp4348Y348YtaCtaT55B.1.2430.000348
ORF1ab/nsp4348Y348YtaCtaT55C.370.00058
ORF1ab/nsp4348Y348YtaCtaT44AY.16.10.00188
ORF1ab/nsp4348Y348YtaCtaT44AY.540.000381
ORF1ab/nsp4348Y348YtaCtaT44B.1.1.280.001245
ORF1ab/nsp4348Y348YtaCtaT44B.1.2400.000862
ORF1ab/nsp4348Y348YtaCtaT44B.1.3510.000119
ORF1ab/nsp4348Y348YtaCtaT44B.1.6370.000292
ORF1ab/nsp4348Y348YtaCtaT33AY.20.001068
ORF1ab/nsp4348Y348YtaCtaT33AY.30.00003
ORF1ab/nsp4348Y348YtaCtaT33B.1.1.3160.002775
ORF1ab/nsp4348Y348YtaCtaT33B.1.4270.000151
ORF1ab/nsp4348Y348YtaCtaT33B.1.5260.000071
ORF1ab/nsp4348Y348YtaCtaT33Q.20.00184
ORF1ab/nsp4348Y348YtaCtaT22AY.1170.000169
ORF1ab/nsp4348Y348YtaCtaT22AY.130.000322
ORF1ab/nsp4348Y348YtaCtaT22AY.260.000057
ORF1ab/nsp4348Y348YtaCtaT22AY.39.10.000079
ORF1ab/nsp4348Y348YtaCtaT22AY.4.20.000043
ORF1ab/nsp4348Y348YtaCtaT22AY.450.000243
ORF1ab/nsp4348Y348YtaCtaT22AY.46.30.001867
ORF1ab/nsp4348Y348YtaCtaT22AY.520.001629
ORF1ab/nsp4348Y348YtaCtaT22AY.670.000929
ORF1ab/nsp4348Y348YtaCtaT22AY.790.002421
ORF1ab/nsp4348Y348YtaCtaT22AY.910.001461
ORF1ab/nsp4348Y348YtaCtaT22AY.980.000158
ORF1ab/nsp4348Y348YtaCtaT22AY.99.20.000184
ORF1ab/nsp4348Y348YtaCtaT22B0.000256
ORF1ab/nsp4348Y348YtaCtaT22B.1.1.10.000653
ORF1ab/nsp4348Y348YtaCtaT22B.1.1.1410.004024
ORF1ab/nsp4348Y348YtaCtaT22B.1.1.4340.000697
ORF1ab/nsp4348Y348YtaCtaT22B.1.1990.008264
ORF1ab/nsp4348Y348YtaCtaT22B.1.351.20.000605
ORF1ab/nsp4348Y348YtaCtaT22B.1.3750.001639
ORF1ab/nsp4348Y348YtaCtaT22B.1.3980.005952
ORF1ab/nsp4348Y348YtaCtaT22B.1.4000.000858
ORF1ab/nsp4348Y348YtaCtaT22D.20.00015
ORF1ab/nsp4348Y348YtaCtaT22P.20.000373
ORF1ab/nsp4348Y348YtaCtaT11A.180.05
ORF1ab/nsp4348Y348YtaCtaT11A.30.002096
ORF1ab/nsp4348Y348YtaCtaT11AY.1040.001984
ORF1ab/nsp4348Y348YtaCtaT11AY.110.001339
ORF1ab/nsp4348Y348YtaCtaT11AY.1190.000035
ORF1ab/nsp4348Y348YtaCtaT11AY.190.00114
ORF1ab/nsp4348Y348YtaCtaT11AY.230.00007
ORF1ab/nsp4348Y348YtaCtaT11AY.340.000097
ORF1ab/nsp4348Y348YtaCtaT11AY.460.000104
ORF1ab/nsp4348Y348YtaCtaT11AY.470.000031
ORF1ab/nsp4348Y348YtaCtaT11AY.490.003195
ORF1ab/nsp4348Y348YtaCtaT11AY.50.000021
ORF1ab/nsp4348Y348YtaCtaT11AY.610.000105
ORF1ab/nsp4348Y348YtaCtaT11AY.680.000274
ORF1ab/nsp4348Y348YtaCtaT11AY.730.000665
ORF1ab/nsp4348Y348YtaCtaT11AY.770.001127
ORF1ab/nsp4348Y348YtaCtaT11AY.9.10.000084
ORF1ab/nsp4348Y348YtaCtaT11AY.950.000761
ORF1ab/nsp4348Y348YtaCtaT11AY.98.10.000048
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.1860.003436
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.1920.002309
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.2220.000204
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.3110.000358
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.3170.000412
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.3690.000446
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.5230.001563
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.5280.004808
ORF1ab/nsp4348Y348YtaCtaT11B.1.1110.001175
ORF1ab/nsp4348Y348YtaCtaT11B.1.177.480.003125
ORF1ab/nsp4348Y348YtaCtaT11B.1.177.770.000726
ORF1ab/nsp4348Y348YtaCtaT11B.1.177.820.000477
ORF1ab/nsp4348Y348YtaCtaT11B.1.2340.000132
ORF1ab/nsp4348Y348YtaCtaT11B.1.2390.001221
ORF1ab/nsp4348Y348YtaCtaT11B.1.360.000146
ORF1ab/nsp4348Y348YtaCtaT11B.1.36.290.000517
ORF1ab/nsp4348Y348YtaCtaT11B.1.3690.000285
ORF1ab/nsp4348Y348YtaCtaT11B.1.3990.001934
ORF1ab/nsp4348Y348YtaCtaT11B.1.4680.005714
ORF1ab/nsp4348Y348YtaCtaT11B.1.564.10.001577
ORF1ab/nsp4348Y348YtaCtaT11B.1.5880.00091
ORF1ab/nsp4348Y348YtaCtaT11B.1.5950.000261
ORF1ab/nsp4348Y348YtaCtaT11B.1.5990.00365
ORF1ab/nsp4348Y348YtaCtaT11B.1.6100.003546
ORF1ab/nsp4348Y348YtaCtaT11P.1.70.000319
ORF1ab/nsp4348Y348YtaCtaT11P.70.004367

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.