CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 348 & Codon = Cac

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4348Y348HY3111HnonsynTacCac15815819596-9598

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4348Y348HTacCac158158All0.00003
ORF1ab/nsp4348Y348HTacCac2424AY.1030.000149
ORF1ab/nsp4348Y348HTacCac1414B.1.617.20.000053
ORF1ab/nsp4348Y348HTacCac1111AY.390.000272
ORF1ab/nsp4348Y348HTacCac1111AY.40.000017
ORF1ab/nsp4348Y348HTacCac1010AY.250.00006
ORF1ab/nsp4348Y348HTacCac1010AY.30.000099
ORF1ab/nsp4348Y348HTacCac1010B.1.177.410.025
ORF1ab/nsp4348Y348HTacCac88B.1.20.00007
ORF1ab/nsp4348Y348HTacCac66B.10.000055
ORF1ab/nsp4348Y348HTacCac44AY.440.000024
ORF1ab/nsp4348Y348HTacCac44AY.98.10.000194
ORF1ab/nsp4348Y348HTacCac44B.1.1.70.000004
ORF1ab/nsp4348Y348HTacCac33AY.290.000047
ORF1ab/nsp4348Y348HTacCac33AY.450.000365
ORF1ab/nsp4348Y348HTacCac33B.1.3200.003736
ORF1ab/nsp4348Y348HTacCac22AY.1020.000053
ORF1ab/nsp4348Y348HTacCac22AY.430.000009
ORF1ab/nsp4348Y348HTacCac22AY.46.20.001271
ORF1ab/nsp4348Y348HTacCac22AY.46.60.000144
ORF1ab/nsp4348Y348HTacCac22AY.900.001369
ORF1ab/nsp4348Y348HTacCac22B.1.10.000036
ORF1ab/nsp4348Y348HTacCac11AY.1060.000335
ORF1ab/nsp4348Y348HTacCac11AY.130.000161
ORF1ab/nsp4348Y348HTacCac11AY.230.00007
ORF1ab/nsp4348Y348HTacCac11AY.240.000431
ORF1ab/nsp4348Y348HTacCac11AY.460.000104
ORF1ab/nsp4348Y348HTacCac11AY.50.000021
ORF1ab/nsp4348Y348HTacCac11AY.850.000427
ORF1ab/nsp4348Y348HTacCac11AY.90.000068
ORF1ab/nsp4348Y348HTacCac11AY.920.000287
ORF1ab/nsp4348Y348HTacCac11AY.980.000079
ORF1ab/nsp4348Y348HTacCac11B.1.1.290.010309
ORF1ab/nsp4348Y348HTacCac11B.1.1.870.066667
ORF1ab/nsp4348Y348HTacCac11B.1.1600.000031
ORF1ab/nsp4348Y348HTacCac11B.1.1770.000013
ORF1ab/nsp4348Y348HTacCac11B.1.2210.000071
ORF1ab/nsp4348Y348HTacCac11B.1.4090.000781
ORF1ab/nsp4348Y348HTacCac11B.1.5260.000024
ORF1ab/nsp4348Y348HTacCac11B.400.000364
ORF1ab/nsp4348Y348HTacCac11D.20.000075
ORF1ab/nsp4348Y348HTacCac11P.10.000016
ORF1ab/nsp4348Y348HTacCac11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.