CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 348

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4348Y348YY3111YsyntaCtaT3265326519596-9598
ORF1ab/nsp4348Y348delY3111deldelTAC---16116119596-9598
ORF1ab/nsp4348Y348HY3111HnonsynTacCac15815819596-9598
ORF1ab/nsp4348Y348XY3111XnonsyntaCtaA1180.7272739596-9598
ORF1ab/nsp4348Y348XY3111XnonsyntaCtaG1120.1818189596-9598
ORF1ab/nsp4348Y348XY3111XnonsyntACtGA1110.09090919596-9598
ORF1ab/nsp4348Y348CY3111CnonsyntActGc7719596-9598
ORF1ab/nsp4348Y348FY3111FnonsyntActTc760.8571439596-9598
ORF1ab/nsp4348Y348FY3111FnonsyntACtTT710.1428579596-9598
ORF1ab/nsp4348Y348NY3111NnonsynTacAac4419596-9598
ORF1ab/nsp4348Y348del1Y3111del1deltaCta-3319596-9598
ORF1ab/nsp4348Y348RY3111RnonsynTACAGA320.6666679596-9598
ORF1ab/nsp4348Y348LY3111LnonsynTAcCTc320.6666679596-9598
ORF1ab/nsp4348Y348RY3111RnonsynTAcCGc310.3333339596-9598
ORF1ab/nsp4348Y348LY3111LnonsyntACtTA310.3333339596-9598
ORF1ab/nsp4348Y348SY3111SnonsyntActCc210.59596-9598
ORF1ab/nsp4348Y348SY3111SnonsynTACAGT210.59596-9598
ORF1ab/nsp4348Y348QY3111QnonsynTaCCaG1119596-9598
ORF1ab/nsp4348Y348PY3111PnonsynTAcCCc1119596-9598
ORF1ab/nsp4348Y348del2Y3111del2deltACt--1119596-9598

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4348Y348YtaCtaT32653265All0.000624
ORF1ab/nsp4348Y348YtaCtaT22262226B.1.1.70.001993
ORF1ab/nsp4348Y348YtaCtaT188188A.60.964103
ORF1ab/nsp4348Y348delTAC---161161All0.000031
ORF1ab/nsp4348Y348YtaCtaT160160B.1.617.20.000602
ORF1ab/nsp4348Y348HTacCac158158All0.00003
ORF1ab/nsp4348Y348YtaCtaT115115AY.390.002842
ORF1ab/nsp4348Y348delTAC---8686B.1.1.70.000077
ORF1ab/nsp4348Y348YtaCtaT6161Q.80.010059
ORF1ab/nsp4348Y348YtaCtaT4646AY.40.000072
ORF1ab/nsp4348Y348YtaCtaT3838AY.430.000168
ORF1ab/nsp4348Y348YtaCtaT2929B.10.000266
ORF1ab/nsp4348Y348YtaCtaT2828B.1.20.000247
ORF1ab/nsp4348Y348YtaCtaT2626B.1.400.509804
ORF1ab/nsp4348Y348HTacCac2424AY.1030.000149
ORF1ab/nsp4348Y348YtaCtaT1919P.1.140.000908
ORF1ab/nsp4348Y348delTAC---1717B.1.1770.000224
ORF1ab/nsp4348Y348YtaCtaT1515B.1.4290.000353
ORF1ab/nsp4348Y348YtaCtaT1414AY.9.20.000514
ORF1ab/nsp4348Y348YtaCtaT1414B.1.10.000254
ORF1ab/nsp4348Y348HTacCac1414B.1.617.20.000053
ORF1ab/nsp4348Y348XtaCtaA811All0.000002
ORF1ab/nsp4348Y348XtaCtaG211All0
ORF1ab/nsp4348Y348XtACtGA111All0
ORF1ab/nsp4348Y348HTacCac1111AY.390.000272
ORF1ab/nsp4348Y348HTacCac1111AY.40.000017
ORF1ab/nsp4348Y348HTacCac1010AY.250.00006
ORF1ab/nsp4348Y348YtaCtaT1010AY.250.00006
ORF1ab/nsp4348Y348HTacCac1010AY.30.000099
ORF1ab/nsp4348Y348delTAC---1010AY.40.000016
ORF1ab/nsp4348Y348YtaCtaT1010AY.440.000061
ORF1ab/nsp4348Y348YtaCtaT1010AY.70.00196
ORF1ab/nsp4348Y348YtaCtaT1010B.1.1600.000312
ORF1ab/nsp4348Y348HTacCac1010B.1.177.410.025
ORF1ab/nsp4348Y348YtaCtaT1010R.10.0009
ORF1ab/nsp4348Y348YtaCtaT99Q.30.001305
ORF1ab/nsp4348Y348YtaCtaT88AY.1030.00005
ORF1ab/nsp4348Y348HTacCac88B.1.20.00007
ORF1ab/nsp4348Y348YtaCtaT88B.1.2580.000532
ORF1ab/nsp4348Y348YtaCtaT88P.10.000126
ORF1ab/nsp4348Y348CtActGc77All0.000001
ORF1ab/nsp4348Y348FtActTc67All0.000001
ORF1ab/nsp4348Y348FtACtTT17All0
ORF1ab/nsp4348Y348YtaCtaT77AY.290.00011
ORF1ab/nsp4348Y348delTAC---77AY.4.50.000752
ORF1ab/nsp4348Y348YtaCtaT77B.1.1.2140.000388
ORF1ab/nsp4348Y348YtaCtaT66AY.200.000233
ORF1ab/nsp4348Y348YtaCtaT66AY.270.000388
ORF1ab/nsp4348Y348HTacCac66B.10.000055
ORF1ab/nsp4348Y348YtaCtaT66B.1.1.100.006689
ORF1ab/nsp4348Y348YtaCtaT66B.1.1770.000079
ORF1ab/nsp4348Y348YtaCtaT55AY.1000.00023
ORF1ab/nsp4348Y348YtaCtaT55AY.1020.000133
ORF1ab/nsp4348Y348delTAC---55AY.430.000022
ORF1ab/nsp4348Y348YtaCtaT55AY.880.004421
ORF1ab/nsp4348Y348YtaCtaT55B.1.1.4640.007364
ORF1ab/nsp4348Y348YtaCtaT55B.1.2430.000348
ORF1ab/nsp4348Y348YtaCtaT55C.370.00058
ORF1ab/nsp4348Y348CtActGc440.222222
ORF1ab/nsp4348Y348NTacAac44All0.000001
ORF1ab/nsp4348Y348YtaCtaT44AY.16.10.00188
ORF1ab/nsp4348Y348HTacCac44AY.440.000024
ORF1ab/nsp4348Y348YtaCtaT44AY.540.000381
ORF1ab/nsp4348Y348HTacCac44AY.98.10.000194
ORF1ab/nsp4348Y348YtaCtaT44B.1.1.280.001245
ORF1ab/nsp4348Y348HTacCac44B.1.1.70.000004
ORF1ab/nsp4348Y348YtaCtaT44B.1.2400.000862
ORF1ab/nsp4348Y348YtaCtaT44B.1.3510.000119
ORF1ab/nsp4348Y348YtaCtaT44B.1.6370.000292
ORF1ab/nsp4348Y348del1taCta-33All0.000001
ORF1ab/nsp4348Y348RTACAGA23All0
ORF1ab/nsp4348Y348LTAcCTc23All0
ORF1ab/nsp4348Y348LtACtTA13All0
ORF1ab/nsp4348Y348RTAcCGc13All0
ORF1ab/nsp4348Y348YtaCtaT33AY.20.001068
ORF1ab/nsp4348Y348HTacCac33AY.290.000047
ORF1ab/nsp4348Y348YtaCtaT33AY.30.00003
ORF1ab/nsp4348Y348HTacCac33AY.450.000365
ORF1ab/nsp4348Y348YtaCtaT33B.1.1.3160.002775
ORF1ab/nsp4348Y348XtaCtaA33B.1.1.70.000003
ORF1ab/nsp4348Y348delTAC---33B.1.177.40.000633
ORF1ab/nsp4348Y348XtaCtaA33B.1.258.170.000312
ORF1ab/nsp4348Y348HTacCac33B.1.3200.003736
ORF1ab/nsp4348Y348YtaCtaT33B.1.4270.000151
ORF1ab/nsp4348Y348YtaCtaT33B.1.5260.000071
ORF1ab/nsp4348Y348delTAC---33B.1.617.20.000011
ORF1ab/nsp4348Y348YtaCtaT33Q.20.00184
ORF1ab/nsp4348Y348RTACAGA220.111111
ORF1ab/nsp4348Y348NTacAac220.111111
ORF1ab/nsp4348Y348STACAGT12All0
ORF1ab/nsp4348Y348StActCc12All0
ORF1ab/nsp4348Y348HTacCac22AY.1020.000053
ORF1ab/nsp4348Y348YtaCtaT22AY.1170.000169
ORF1ab/nsp4348Y348YtaCtaT22AY.130.000322
ORF1ab/nsp4348Y348YtaCtaT22AY.260.000057
ORF1ab/nsp4348Y348YtaCtaT22AY.39.10.000079
ORF1ab/nsp4348Y348YtaCtaT22AY.4.20.000043
ORF1ab/nsp4348Y348HTacCac22AY.430.000009
ORF1ab/nsp4348Y348YtaCtaT22AY.450.000243
ORF1ab/nsp4348Y348HTacCac22AY.46.20.001271
ORF1ab/nsp4348Y348YtaCtaT22AY.46.30.001867
ORF1ab/nsp4348Y348HTacCac22AY.46.60.000144
ORF1ab/nsp4348Y348YtaCtaT22AY.520.001629
ORF1ab/nsp4348Y348YtaCtaT22AY.670.000929
ORF1ab/nsp4348Y348YtaCtaT22AY.790.002421
ORF1ab/nsp4348Y348HTacCac22AY.900.001369
ORF1ab/nsp4348Y348YtaCtaT22AY.910.001461
ORF1ab/nsp4348Y348YtaCtaT22AY.980.000158
ORF1ab/nsp4348Y348YtaCtaT22AY.99.20.000184
ORF1ab/nsp4348Y348YtaCtaT22B0.000256
ORF1ab/nsp4348Y348XtaCtaA22B.10.000018
ORF1ab/nsp4348Y348HTacCac22B.1.10.000036
ORF1ab/nsp4348Y348YtaCtaT22B.1.1.10.000653
ORF1ab/nsp4348Y348YtaCtaT22B.1.1.1410.004024
ORF1ab/nsp4348Y348YtaCtaT22B.1.1.4340.000697
ORF1ab/nsp4348Y348del1taCta-22B.1.1.70.000002
ORF1ab/nsp4348Y348FtActTc22B.1.1.70.000002
ORF1ab/nsp4348Y348delTAC---22B.1.177.170.001642
ORF1ab/nsp4348Y348delTAC---22B.1.177.870.001456
ORF1ab/nsp4348Y348YtaCtaT22B.1.1990.008264
ORF1ab/nsp4348Y348delTAC---22B.1.20.000018
ORF1ab/nsp4348Y348YtaCtaT22B.1.351.20.000605
ORF1ab/nsp4348Y348YtaCtaT22B.1.3750.001639
ORF1ab/nsp4348Y348YtaCtaT22B.1.3980.005952
ORF1ab/nsp4348Y348YtaCtaT22B.1.4000.000858
ORF1ab/nsp4348Y348FtActTc22B.1.617.20.000008
ORF1ab/nsp4348Y348YtaCtaT22D.20.00015
ORF1ab/nsp4348Y348YtaCtaT22P.20.000373
ORF1ab/nsp4348Y348YtaCtaT11A.180.05
ORF1ab/nsp4348Y348YtaCtaT11A.30.002096
ORF1ab/nsp4348Y348delTAC---11AD.20.000219
ORF1ab/nsp4348Y348PTAcCCc11All0
ORF1ab/nsp4348Y348del2tACt--11All0
ORF1ab/nsp4348Y348QTaCCaG11All0
ORF1ab/nsp4348Y348XtaCtaG11AU.10.001266
ORF1ab/nsp4348Y348NTacAac11AY.1030.000006
ORF1ab/nsp4348Y348YtaCtaT11AY.1040.001984
ORF1ab/nsp4348Y348HTacCac11AY.1060.000335
ORF1ab/nsp4348Y348YtaCtaT11AY.110.001339
ORF1ab/nsp4348Y348delTAC---11AY.1110.000183
ORF1ab/nsp4348Y348YtaCtaT11AY.1190.000035
ORF1ab/nsp4348Y348LtACtTA11AY.1200.000037
ORF1ab/nsp4348Y348HTacCac11AY.130.000161
ORF1ab/nsp4348Y348delTAC---11AY.190.00114
ORF1ab/nsp4348Y348YtaCtaT11AY.190.00114
ORF1ab/nsp4348Y348YtaCtaT11AY.230.00007
ORF1ab/nsp4348Y348HTacCac11AY.230.00007
ORF1ab/nsp4348Y348HTacCac11AY.240.000431
ORF1ab/nsp4348Y348YtaCtaT11AY.340.000097
ORF1ab/nsp4348Y348FtACtTT11AY.39.10.00004
ORF1ab/nsp4348Y348LTAcCTc11AY.430.000004
ORF1ab/nsp4348Y348delTAC---11AY.440.000006
ORF1ab/nsp4348Y348LTAcCTc11AY.440.000006
ORF1ab/nsp4348Y348YtaCtaT11AY.460.000104
ORF1ab/nsp4348Y348HTacCac11AY.460.000104
ORF1ab/nsp4348Y348delTAC---11AY.46.20.000635
ORF1ab/nsp4348Y348YtaCtaT11AY.470.000031
ORF1ab/nsp4348Y348YtaCtaT11AY.490.003195
ORF1ab/nsp4348Y348HTacCac11AY.50.000021
ORF1ab/nsp4348Y348YtaCtaT11AY.50.000021
ORF1ab/nsp4348Y348delTAC---11AY.60.000041
ORF1ab/nsp4348Y348delTAC---11AY.600.000938
ORF1ab/nsp4348Y348YtaCtaT11AY.610.000105
ORF1ab/nsp4348Y348delTAC---11AY.680.000274
ORF1ab/nsp4348Y348YtaCtaT11AY.680.000274
ORF1ab/nsp4348Y348YtaCtaT11AY.730.000665
ORF1ab/nsp4348Y348YtaCtaT11AY.770.001127
ORF1ab/nsp4348Y348HTacCac11AY.850.000427
ORF1ab/nsp4348Y348delTAC---11AY.90.000068
ORF1ab/nsp4348Y348HTacCac11AY.90.000068
ORF1ab/nsp4348Y348YtaCtaT11AY.9.10.000084
ORF1ab/nsp4348Y348HTacCac11AY.920.000287
ORF1ab/nsp4348Y348YtaCtaT11AY.950.000761
ORF1ab/nsp4348Y348HTacCac11AY.980.000079
ORF1ab/nsp4348Y348YtaCtaT11AY.98.10.000048
ORF1ab/nsp4348Y348PTAcCCc11AY.990.001049
ORF1ab/nsp4348Y348RTAcCGc11AY.990.001049
ORF1ab/nsp4348Y348StActCc11AY.990.001049
ORF1ab/nsp4348Y348CtActGc11AY.990.001049
ORF1ab/nsp4348Y348delTAC---11AY.99.10.001553
ORF1ab/nsp4348Y348CtActGc11B.10.000009
ORF1ab/nsp4348Y348QTaCCaG11B.1.10.000018
ORF1ab/nsp4348Y348XtaCtaG11B.1.10.000018
ORF1ab/nsp4348Y348delTAC---11B.1.1.1390.022727
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.1860.003436
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.1920.002309
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.2220.000204
ORF1ab/nsp4348Y348HTacCac11B.1.1.290.010309
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.3110.000358
ORF1ab/nsp4348Y348delTAC---11B.1.1.3120.001912
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.3170.000412
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.3690.000446
ORF1ab/nsp4348Y348delTAC---11B.1.1.510.001718
ORF1ab/nsp4348Y348CtActGc11B.1.1.5150.02
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.5230.001563
ORF1ab/nsp4348Y348YtaCtaT11B.1.1.5280.004808
ORF1ab/nsp4348Y348NTacAac11B.1.1.70.000001
ORF1ab/nsp4348Y348delTAC---11B.1.1.700.000341
ORF1ab/nsp4348Y348HTacCac11B.1.1.870.066667
ORF1ab/nsp4348Y348YtaCtaT11B.1.1110.001175
ORF1ab/nsp4348Y348FtActTc11B.1.1600.000031
ORF1ab/nsp4348Y348HTacCac11B.1.1600.000031
ORF1ab/nsp4348Y348HTacCac11B.1.1770.000013
ORF1ab/nsp4348Y348del2tACt--11B.1.1770.000013
ORF1ab/nsp4348Y348del1taCta-11B.1.1770.000013
ORF1ab/nsp4348Y348delTAC---11B.1.177.160.000664
ORF1ab/nsp4348Y348delTAC---11B.1.177.180.00116
ORF1ab/nsp4348Y348delTAC---11B.1.177.190.001431
ORF1ab/nsp4348Y348YtaCtaT11B.1.177.480.003125
ORF1ab/nsp4348Y348delTAC---11B.1.177.560.000668
ORF1ab/nsp4348Y348delTAC---11B.1.177.690.001484
ORF1ab/nsp4348Y348delTAC---11B.1.177.760.002494
ORF1ab/nsp4348Y348YtaCtaT11B.1.177.770.000726
ORF1ab/nsp4348Y348YtaCtaT11B.1.177.820.000477
ORF1ab/nsp4348Y348HTacCac11B.1.2210.000071
ORF1ab/nsp4348Y348YtaCtaT11B.1.2340.000132
ORF1ab/nsp4348Y348YtaCtaT11B.1.2390.001221
ORF1ab/nsp4348Y348YtaCtaT11B.1.360.000146
ORF1ab/nsp4348Y348YtaCtaT11B.1.36.290.000517
ORF1ab/nsp4348Y348YtaCtaT11B.1.3690.000285
ORF1ab/nsp4348Y348YtaCtaT11B.1.3990.001934
ORF1ab/nsp4348Y348HTacCac11B.1.4090.000781
ORF1ab/nsp4348Y348YtaCtaT11B.1.4680.005714
ORF1ab/nsp4348Y348HTacCac11B.1.5260.000024
ORF1ab/nsp4348Y348YtaCtaT11B.1.564.10.001577
ORF1ab/nsp4348Y348YtaCtaT11B.1.5880.00091
ORF1ab/nsp4348Y348YtaCtaT11B.1.5950.000261
ORF1ab/nsp4348Y348YtaCtaT11B.1.5990.00365
ORF1ab/nsp4348Y348YtaCtaT11B.1.6100.003546
ORF1ab/nsp4348Y348XtACtGA11B.1.617.10.000129
ORF1ab/nsp4348Y348STACAGT11B.1.617.20.000004
ORF1ab/nsp4348Y348delTAC---11B.150.017544
ORF1ab/nsp4348Y348HTacCac11B.400.000364
ORF1ab/nsp4348Y348delTAC---11C.170.055556
ORF1ab/nsp4348Y348delTAC---11C.350.000774
ORF1ab/nsp4348Y348HTacCac11D.20.000075
ORF1ab/nsp4348Y348HTacCac11P.10.000016
ORF1ab/nsp4348Y348FtActTc11P.1.10.000318
ORF1ab/nsp4348Y348HTacCac11P.1.140.000048
ORF1ab/nsp4348Y348YtaCtaT11P.1.70.000319
ORF1ab/nsp4348Y348YtaCtaT11P.70.004367
ORF1ab/nsp4348Y348delTAC---11Q.10.000126