CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 34

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp434S34FS2797FnonsyntCttTt10307103040.9997098654-8656
ORF1ab/nsp434S34FS2797FnonsyntCTtTC1030730.0002910648654-8656
ORF1ab/nsp434S34SS2797SsyntcTtcC302829740.9821668654-8656
ORF1ab/nsp434S34SS2797SsyntcTtcA3028430.01420088654-8656
ORF1ab/nsp434S34SS2797SsyntcTtcG302870.002311768654-8656
ORF1ab/nsp434S34SS2797SsynTCtAGt302840.0013218654-8656
ORF1ab/nsp434S34IS2797InonsynTCTATA2681350.5037318654-8656
ORF1ab/nsp434S34IS2797InonsynTCtATt2681230.4589558654-8656
ORF1ab/nsp434S34IS2797InonsynTCTATC268100.03731348654-8656
ORF1ab/nsp434S34YS2797YnonsyntCttAt1961880.9591848654-8656
ORF1ab/nsp434S34YS2797YnonsyntCTtAC19680.04081638654-8656
ORF1ab/nsp434S34KS2797KnonsynTCTAAA16816818654-8656
ORF1ab/nsp434S34NS2797NnonsynTCtAAt1611420.8819888654-8656
ORF1ab/nsp434S34NS2797NnonsynTCTAAC161190.1180128654-8656
ORF1ab/nsp434S34XS2797XnonsyntCTtAA1371330.9708038654-8656
ORF1ab/nsp434S34XS2797XnonsyntCTtGA13740.02919718654-8656
ORF1ab/nsp434S34LS2797LnonsyntCTtTA1281150.8984388654-8656
ORF1ab/nsp434S34LS2797LnonsynTCTCTA12870.05468758654-8656
ORF1ab/nsp434S34LS2797LnonsynTCtCTt12860.0468758654-8656
ORF1ab/nsp434S34delS2797deldelTCT---10910918654-8656
ORF1ab/nsp434S34TS2797TnonsynTctAct69390.5652178654-8656
ORF1ab/nsp434S34TS2797TnonsynTcTAcA69270.3913048654-8656
ORF1ab/nsp434S34TS2797TnonsynTcTAcC6930.04347838654-8656
ORF1ab/nsp434S34PS2797PnonsynTctCct35310.8857148654-8656
ORF1ab/nsp434S34PS2797PnonsynTcTCcA3540.1142868654-8656
ORF1ab/nsp434S34RS2797RnonsynTCTCGA2090.458654-8656
ORF1ab/nsp434S34RS2797RnonsynTCTAGA2090.458654-8656
ORF1ab/nsp434S34RS2797RnonsynTCtCGt2020.18654-8656
ORF1ab/nsp434S34QS2797QnonsynTCTCAA161618654-8656
ORF1ab/nsp434S34AS2797AnonsynTctGct101018654-8656
ORF1ab/nsp434S34del1S2797del1deltcTtc-960.6666678654-8656
ORF1ab/nsp434S34del1S2797del1deltCtt-t920.2222228654-8656
ORF1ab/nsp434S34del1S2797del1delTct-ct910.1111118654-8656
ORF1ab/nsp434S34HS2797HnonsynTCtCAt8818654-8656
ORF1ab/nsp434S34CS2797CnonsyntCttGt6618654-8656
ORF1ab/nsp434S34VS2797VnonsynTCtGTt2218654-8656
ORF1ab/nsp434S34DS2797DnonsynTCtGAt1118654-8656
ORF1ab/nsp434S34del2S2797del2delTCt--t1118654-8656

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp434S34FtCttTt1030410307All0.001971
ORF1ab/nsp434S34FtCTtTC310307All0.000001
ORF1ab/nsp434S34FtCttTt34023405B.1.1.70.003046
ORF1ab/nsp434S34FtCTtTC33405B.1.1.70.000003
ORF1ab/nsp434S34StcTtcC29743028All0.000569
ORF1ab/nsp434S34StcTtcA433028All0.000008
ORF1ab/nsp434S34StcTtcG73028All0.000001
ORF1ab/nsp434S34STCtAGt43028All0.000001
ORF1ab/nsp434S34StcTtcC20932095B.1.617.20.007881
ORF1ab/nsp434S34StcTtcG12095B.1.617.20.000004
ORF1ab/nsp434S34StcTtcA12095B.1.617.20.000004
ORF1ab/nsp434S34FtCttTt13581358AY.440.008266
ORF1ab/nsp434S34FtCttTt10551055AY.390.026071
ORF1ab/nsp434S34FtCttTt573573AY.1030.003558
ORF1ab/nsp434S34StcTtcC442442AY.1020.011719
ORF1ab/nsp434S34FtCttTt346346AY.40.000539
ORF1ab/nsp434S34FtCttTt340340B.1.617.20.00128
ORF1ab/nsp434S34FtCttTt326326B.10.002986
ORF1ab/nsp434S34ITCTATA135268All0.000026
ORF1ab/nsp434S34ITCtATt123268All0.000024
ORF1ab/nsp434S34ITCTATC10268All0.000002
ORF1ab/nsp434S34ITCTATA123246B.1.1.70.00011
ORF1ab/nsp434S34ITCtATt113246B.1.1.70.000101
ORF1ab/nsp434S34ITCTATC10246B.1.1.70.000009
ORF1ab/nsp434S34YtCttAt188196All0.000036
ORF1ab/nsp434S34YtCTtAC8196All0.000002
ORF1ab/nsp434S34YtCttAt163169B.1.1.70.000146
ORF1ab/nsp434S34YtCTtAC6169B.1.1.70.000005
ORF1ab/nsp434S34KTCTAAA168168All0.000032
ORF1ab/nsp434S34NTCtAAt142161All0.000027
ORF1ab/nsp434S34NTCTAAC19161All0.000004
ORF1ab/nsp434S34FtCttTt159159B.1.20.0014
ORF1ab/nsp434S34KTCTAAA154154B.1.1.70.000138
ORF1ab/nsp434S34FtCttTt154154B.1.3510.004578
ORF1ab/nsp434S34NTCtAAt131150B.1.1.70.000117
ORF1ab/nsp434S34NTCTAAC19150B.1.1.70.000017
ORF1ab/nsp434S34XtCTtAA133137All0.000025
ORF1ab/nsp434S34XtCTtGA4137All0.000001
ORF1ab/nsp434S34FtCttTt131131AY.250.000788
ORF1ab/nsp434S34FtCttTt129129B.1.5650.104538
ORF1ab/nsp434S34LtCTtTA115128All0.000022
ORF1ab/nsp434S34LTCTCTA7128All0.000001
ORF1ab/nsp434S34LTCtCTt6128All0.000001
ORF1ab/nsp434S34XtCTtAA123127B.1.1.70.00011
ORF1ab/nsp434S34XtCTtGA4127B.1.1.70.000004
ORF1ab/nsp434S34FtCttTt119119B.1.4290.0028
ORF1ab/nsp434S34LtCTtTA105116B.1.1.70.000094
ORF1ab/nsp434S34LTCTCTA6116B.1.1.70.000005
ORF1ab/nsp434S34LTCtCTt5116B.1.1.70.000004
ORF1ab/nsp434S34FtCttTt110110AY.430.000487
ORF1ab/nsp434S34delTCT---109109All0.000021
ORF1ab/nsp434S34FtCttTt8282P.10.001292
ORF1ab/nsp434S34FtCttTt7676B.1.1770.001001
ORF1ab/nsp434S34FtCttTt7474AY.30.000736
ORF1ab/nsp434S34TTctAct3969All0.000007
ORF1ab/nsp434S34TTcTAcA2769All0.000005
ORF1ab/nsp434S34TTcTAcC369All0.000001
ORF1ab/nsp434S34StcTtcC6969AY.34.10.035186
ORF1ab/nsp434S34FtCttTt6767B.1.1.370.012922
ORF1ab/nsp434S34TTctAct3462B.1.1.70.00003
ORF1ab/nsp434S34TTcTAcA2562B.1.1.70.000022
ORF1ab/nsp434S34TTcTAcC362B.1.1.70.000003
ORF1ab/nsp434S34FtCttTt6060AY.1170.005071
ORF1ab/nsp434S34FtCttTt5959B.1.5960.005141
ORF1ab/nsp434S34StcTtcC5254AY.430.00023
ORF1ab/nsp434S34StcTtcG254AY.430.000009
ORF1ab/nsp434S34FtCttTt5353B.1.10.000961
ORF1ab/nsp434S34FtCttTt5151B.1.36.370.141667
ORF1ab/nsp434S34StcTtcC4646AY.390.001137
ORF1ab/nsp434S34delTCT---4646B.1.1.70.000041
ORF1ab/nsp434S34StcTtcA3445B.1.1.70.00003
ORF1ab/nsp434S34StcTtcC845B.1.1.70.000007
ORF1ab/nsp434S34STCtAGt245B.1.1.70.000002
ORF1ab/nsp434S34StcTtcG145B.1.1.70.000001
ORF1ab/nsp434S34FtCttTt4343B.1.1600.001341
ORF1ab/nsp434S34FtCttTt4242B.1.1.4310.677419
ORF1ab/nsp434S34StcTtcC4141AY.440.00025
ORF1ab/nsp434S34FtCttTt4141B.1.1.4340.014291
ORF1ab/nsp434S34FtCttTt4141B.1.1.5190.001628
ORF1ab/nsp434S34FtCttTt3737AY.1020.000981
ORF1ab/nsp434S34FtCttTt3737AY.4.20.000802
ORF1ab/nsp434S34FtCttTt3636B.1.1.3280.610169
ORF1ab/nsp434S34PTctCct3135All0.000006
ORF1ab/nsp434S34PTcTCcA435All0.000001
ORF1ab/nsp434S34FtCttTt3131B.1.1.2650.097792
ORF1ab/nsp434S34FtCttTt2929B.1.1390.021261
ORF1ab/nsp434S34FtCttTt2828AY.200.001088
ORF1ab/nsp434S34FtCttTt2828AY.46.60.002022
ORF1ab/nsp434S34FtCttTt2727B.1.5260.000635
ORF1ab/nsp434S34FtCttTt2626B.1.1.80.09319
ORF1ab/nsp434S34FtCttTt2424B.1.351.30.021034
ORF1ab/nsp434S34StcTtcC2021B.1.1770.000263
ORF1ab/nsp434S34StcTtcA121B.1.1770.000013
ORF1ab/nsp434S34FtCttTt2121B.1.617.10.002708
ORF1ab/nsp434S34RTCTCGA920All0.000002
ORF1ab/nsp434S34RTCTAGA920All0.000002
ORF1ab/nsp434S34RTCtCGt220All0
ORF1ab/nsp434S34FtCttTt2020AY.50.000413
ORF1ab/nsp434S34FtCttTt2020B.1.6090.009588
ORF1ab/nsp434S34RTCTCGA919B.1.1.70.000008
ORF1ab/nsp434S34RTCTAGA819B.1.1.70.000007
ORF1ab/nsp434S34RTCtCGt219B.1.1.70.000002
ORF1ab/nsp434S34FtCttTt1919B.1.4970.00598
ORF1ab/nsp434S34FtCttTt1919Q.10.0024
ORF1ab/nsp434S34FtCttTt1818AY.340.001745
ORF1ab/nsp434S34FtCttTt1818AY.9.10.001507
ORF1ab/nsp434S34FtCttTt1818B.1.2340.002375
ORF1ab/nsp434S34FtCttTt1717AY.1180.001065
ORF1ab/nsp434S34FtCttTt1717AY.330.001135
ORF1ab/nsp434S34FtCttTt1717Q.80.002803
ORF1ab/nsp434S34QTCTCAA1616All0.000003
ORF1ab/nsp434S34FtCttTt1616B.1.177.810.003029
ORF1ab/nsp434S34FtCttTt1616C.36.30.009075
ORF1ab/nsp434S34FtCttTt1515AY.1000.00069
ORF1ab/nsp434S34StcTtcC1515AY.1200.000558
ORF1ab/nsp434S34FtCttTt1515AY.99.20.001382
ORF1ab/nsp434S34StcTtcC1414AY.910.010226
ORF1ab/nsp434S34FtCttTt1313AY.260.000368
ORF1ab/nsp434S34QTCTCAA1313B.1.1.70.000012
ORF1ab/nsp434S34FtCttTt1313B.1.6210.001151
ORF1ab/nsp434S34FtCttTt1212AY.46.40.001974
ORF1ab/nsp434S34PTctCct912B.1.1.70.000008
ORF1ab/nsp434S34PTcTCcA312B.1.1.70.000003
ORF1ab/nsp434S34FtCttTt1212B.1.160.160.011152
ORF1ab/nsp434S34FtCttTt1212B.1.177.210.000918
ORF1ab/nsp434S34ITCtATt612P.10.000095
ORF1ab/nsp434S34ITCTATA612P.10.000095
ORF1ab/nsp434S34FtCttTt1111AY.610.001153
ORF1ab/nsp434S34FtCttTt1111B.1.1.630.004244
ORF1ab/nsp434S34FtCttTt1111B.1.2400.002371
ORF1ab/nsp434S34FtCttTt1111B.1.2580.000732
ORF1ab/nsp434S34ATctGct1010All0.000002
ORF1ab/nsp434S34FtCttTt1010AY.1190.000353
ORF1ab/nsp434S34FtCttTt1010AY.230.000697
ORF1ab/nsp434S34StcTtcC1010AY.46.40.001645
ORF1ab/nsp434S34FtCttTt1010AY.750.00056
ORF1ab/nsp434S34FtCttTt1010B.1.1.3060.004384
ORF1ab/nsp434S34FtCttTt1010B.1.2210.00071
ORF1ab/nsp434S34FtCttTt1010B.1.2430.000696
ORF1ab/nsp434S34FtCttTt1010B.1.2980.021142
ORF1ab/nsp434S34del1tcTtc-69All0.000001
ORF1ab/nsp434S34del1tCtt-t29All0
ORF1ab/nsp434S34del1Tct-ct19All0
ORF1ab/nsp434S34FtCttTt99AY.3.10.000767
ORF1ab/nsp434S34StcTtcC79AY.40.000011
ORF1ab/nsp434S34StcTtcA29AY.40.000003
ORF1ab/nsp434S34FtCttTt99AY.450.001095
ORF1ab/nsp434S34StcTtcC99AY.5.30.003036
ORF1ab/nsp434S34FtCttTt99AY.98.10.000436
ORF1ab/nsp434S34FtCttTt99B.1.3960.006351
ORF1ab/nsp434S34FtCttTt99B.1.5250.001018
ORF1ab/nsp434S34FtCttTt99B.1.6370.000658
ORF1ab/nsp434S34HTCtCAt88All0.000002
ORF1ab/nsp434S34StcTtcC88AY.1180.000501
ORF1ab/nsp434S34FtCttTt88AY.1210.001083
ORF1ab/nsp434S34StcTtcC88AY.260.000226
ORF1ab/nsp434S34FtCttTt88AY.290.000126
ORF1ab/nsp434S34FtCttTt88B.1.1.3170.003294
ORF1ab/nsp434S34FtCttTt88B.1.5170.003416
ORF1ab/nsp434S34FtCttTt88B.1.5680.008889
ORF1ab/nsp434S34FtCttTt88C.230.046512
ORF1ab/nsp434S34FtCttTt88P.20.001493
ORF1ab/nsp434S34FtCttTt77AY.1130.000997
ORF1ab/nsp434S34StcTtcC77AY.190.007982
ORF1ab/nsp434S34FtCttTt77AY.4.50.000752
ORF1ab/nsp434S34FtCttTt77AY.470.000218
ORF1ab/nsp434S34FtCttTt77AY.690.001307
ORF1ab/nsp434S34FtCttTt77AY.9.20.000257
ORF1ab/nsp434S34StcTtcC77AY.980.000553
ORF1ab/nsp434S34delTCT---77B.10.000064
ORF1ab/nsp434S34FtCttTt77B.1.1.2220.001428
ORF1ab/nsp434S34FtCttTt77B.1.1.3750.083333
ORF1ab/nsp434S34FtCttTt77B.1.177.110.011885
ORF1ab/nsp434S34LtCTtTA57P.10.000079
ORF1ab/nsp434S34LTCtCTt17P.10.000016
ORF1ab/nsp434S34LTCTCTA17P.10.000016
ORF1ab/nsp434S34FtCttTt77Q.30.001015
ORF1ab/nsp434S34CtCttGt66All0.000001
ORF1ab/nsp434S34StcTtcC66AY.1030.000037
ORF1ab/nsp434S34StcTtcC66AY.1170.000507
ORF1ab/nsp434S34FtCttTt66AY.1200.000223
ORF1ab/nsp434S34FtCttTt66AY.420.000241
ORF1ab/nsp434S34StcTtcC66AY.50.000124
ORF1ab/nsp434S34StcTtcC66AY.75.10.001082
ORF1ab/nsp434S34FtCttTt66AY.980.000474
ORF1ab/nsp434S34HTCtCAt66B.1.1.70.000005
ORF1ab/nsp434S34delTCT---66B.1.1770.000079
ORF1ab/nsp434S34FtCttTt66B.1.177.100.005268
ORF1ab/nsp434S34FtCttTt66B.1.5950.001566
ORF1ab/nsp434S34FtCttTt66B.1.619.10.003849
ORF1ab/nsp434S34KTCTAAA66P.10.000095
ORF1ab/nsp434S34NTCtAAt66P.10.000095
ORF1ab/nsp434S34FtCttTt66P.1.140.000287
ORF1ab/nsp434S34FtCttTt66P.1.20.006936
ORF1ab/nsp434S34StcTtcC55AY.1160.001434
ORF1ab/nsp434S34FtCttTt55AY.270.000324
ORF1ab/nsp434S34FtCttTt55AY.320.002662
ORF1ab/nsp434S34FtCttTt55AY.4.40.002046
ORF1ab/nsp434S34StcTtcC55AY.450.000608
ORF1ab/nsp434S34StcTtcC55B.10.000046
ORF1ab/nsp434S34FtCttTt55B.1.1.1570.004566
ORF1ab/nsp434S34FtCttTt55B.1.1.2140.000277
ORF1ab/nsp434S34FtCttTt55B.1.1.3740.011876
ORF1ab/nsp434S34FtCttTt55B.1.466.20.001956
ORF1ab/nsp434S34FtCttTt55B.1.5760.004533
ORF1ab/nsp434S34FtCttTt55B.1.5820.002453
ORF1ab/nsp434S34FtCttTt55C.370.00058
ORF1ab/nsp434S34XtCTtAA55P.10.000079
ORF1ab/nsp434S34YtCttAt55P.10.000079
ORF1ab/nsp434S34FtCttTt44A.2.50.001996
ORF1ab/nsp434S34FtCttTt44AY.100.00212
ORF1ab/nsp434S34StcTtcC44AY.1190.000141
ORF1ab/nsp434S34FtCttTt44AY.140.000352
ORF1ab/nsp434S34FtCttTt44AY.160.001519
ORF1ab/nsp434S34FtCttTt44AY.350.000932
ORF1ab/nsp434S34FtCttTt44AY.4.2.10.000596
ORF1ab/nsp434S34StcTtcC34AY.5.40.00083
ORF1ab/nsp434S34StcTtcG14AY.5.40.000277
ORF1ab/nsp434S34FtCttTt44AY.70.000784
ORF1ab/nsp434S34StcTtcC44AY.80.002424
ORF1ab/nsp434S34FtCttTt44AY.950.003044
ORF1ab/nsp434S34FtCttTt44B0.000511
ORF1ab/nsp434S34ATctGct44B.10.000037
ORF1ab/nsp434S34FtCttTt44B.1.1.250.002274
ORF1ab/nsp434S34FtCttTt44B.1.1.280.001245
ORF1ab/nsp434S34FtCttTt44B.1.1.330.001684
ORF1ab/nsp434S34FtCttTt44B.1.177.160.002658
ORF1ab/nsp434S34FtCttTt44B.1.2320.002149
ORF1ab/nsp434S34FtCttTt44B.1.360.000584
ORF1ab/nsp434S34delTCT---44B.1.6210.000354
ORF1ab/nsp434S34FtCttTt44C.360.003643
ORF1ab/nsp434S34FtCttTt44P.1.10.001271
ORF1ab/nsp434S34FtCttTt44P.1.160.001496
ORF1ab/nsp434S34FtCttTt33A.23.10.002113
ORF1ab/nsp434S34FtCttTt33AY.1010.001471
ORF1ab/nsp434S34FtCttTt33AY.1100.000338
ORF1ab/nsp434S34StcTtcC33AY.230.000209
ORF1ab/nsp434S34FtCttTt33AY.240.001293
ORF1ab/nsp434S34StcTtcC33AY.320.001597
ORF1ab/nsp434S34StcTtcC23AY.330.000134
ORF1ab/nsp434S34StcTtcG13AY.330.000067
ORF1ab/nsp434S34YtCttAt33AY.360.000445
ORF1ab/nsp434S34FtCttTt33AY.360.000445
ORF1ab/nsp434S34delTCT---33AY.40.000005
ORF1ab/nsp434S34delTCT---33AY.4.50.000322
ORF1ab/nsp434S34YtCttAt23AY.440.000012
ORF1ab/nsp434S34YtCTtAC13AY.440.000006
ORF1ab/nsp434S34FtCttTt33AY.460.000312
ORF1ab/nsp434S34FtCttTt33AY.540.000286
ORF1ab/nsp434S34FtCttTt33AY.60.000123
ORF1ab/nsp434S34FtCttTt33AY.710.001425
ORF1ab/nsp434S34StcTtcC33AY.750.000168
ORF1ab/nsp434S34StcTtcC33AY.880.002653
ORF1ab/nsp434S34FtCttTt33AY.90.000203
ORF1ab/nsp434S34delTCT---33B.1.10.000054
ORF1ab/nsp434S34FtCttTt33B.1.1.10.00098
ORF1ab/nsp434S34FtCttTt33B.1.1.1630.022901
ORF1ab/nsp434S34FtCttTt33B.1.1.1960.017143
ORF1ab/nsp434S34FtCttTt33B.1.1.2840.000322
ORF1ab/nsp434S34FtCttTt33B.1.1.3220.026316
ORF1ab/nsp434S34StcTtcC33B.1.1.4320.003797
ORF1ab/nsp434S34CtCttGt33B.1.1.70.000003
ORF1ab/nsp434S34FtCttTt33B.1.1280.001906
ORF1ab/nsp434S34FtCttTt33B.1.130.007126
ORF1ab/nsp434S34FtCttTt33B.1.177.230.009709
ORF1ab/nsp434S34FtCttTt33B.1.177.600.000655
ORF1ab/nsp434S34FtCttTt33B.1.177.70.000495
ORF1ab/nsp434S34FtCttTt33B.1.177.720.010169
ORF1ab/nsp434S34FtCttTt33B.1.177.770.002179
ORF1ab/nsp434S34FtCttTt33B.1.2060.002447
ORF1ab/nsp434S34FtCttTt33B.1.2410.002435
ORF1ab/nsp434S34YtCttAt33B.1.2580.0002
ORF1ab/nsp434S34FtCttTt33B.1.36.180.001261
ORF1ab/nsp434S34FtCttTt33B.1.3690.000856
ORF1ab/nsp434S34FtCttTt33B.1.4040.003906
ORF1ab/nsp434S34FtCttTt33B.1.4270.000151
ORF1ab/nsp434S34FtCttTt33B.1.5640.001278
ORF1ab/nsp434S34delTCT---33B.1.617.20.000011
ORF1ab/nsp434S34FtCttTt33C.10.007177
ORF1ab/nsp434S34FtCttTt33C.70.103448
ORF1ab/nsp434S34VTCtGTt220.111111
ORF1ab/nsp434S34delTCT---220.111111
ORF1ab/nsp434S34FtCttTt22A0.000774
ORF1ab/nsp434S34FtCttTt22A.2.40.006734
ORF1ab/nsp434S34FtCttTt22A.30.004193
ORF1ab/nsp434S34VTCtGTt22All0
ORF1ab/nsp434S34FtCttTt22AY.10.000791
ORF1ab/nsp434S34StcTtcC22AY.1000.000092
ORF1ab/nsp434S34FtCttTt22AY.1060.00067
ORF1ab/nsp434S34StcTtcC22AY.1100.000225
ORF1ab/nsp434S34FtCttTt22AY.1110.000366
ORF1ab/nsp434S34FtCttTt22AY.120.10.000642
ORF1ab/nsp434S34FtCttTt22AY.130.000322
ORF1ab/nsp434S34PTctCct22AY.230.000139
ORF1ab/nsp434S34delTCT---22AY.250.000012
ORF1ab/nsp434S34ITCTATA12AY.250.000006
ORF1ab/nsp434S34ITCtATt12AY.250.000006
ORF1ab/nsp434S34PTctCct22AY.270.000129
ORF1ab/nsp434S34StcTtcC22AY.30.00002
ORF1ab/nsp434S34FtCttTt22AY.380.000999
ORF1ab/nsp434S34FtCttTt22AY.39.10.000079
ORF1ab/nsp434S34FtCttTt22AY.4.10.001475
ORF1ab/nsp434S34StcTtcC22AY.4.20.000043
ORF1ab/nsp434S34delTCT---22AY.430.000009
ORF1ab/nsp434S34PTctCct22AY.430.000009
ORF1ab/nsp434S34StcTtcC22AY.460.000208
ORF1ab/nsp434S34FtCttTt22AY.46.50.000397
ORF1ab/nsp434S34YtCttAt22AY.5.30.000675
ORF1ab/nsp434S34FtCttTt22AY.510.001818
ORF1ab/nsp434S34StcTtcC22AY.590.001059
ORF1ab/nsp434S34StcTtcC22AY.620.000871
ORF1ab/nsp434S34FtCttTt22AY.620.000871
ORF1ab/nsp434S34FtCttTt22AY.7.10.000225
ORF1ab/nsp434S34FtCttTt22AY.75.10.000361
ORF1ab/nsp434S34StcTtcC22AY.840.000875
ORF1ab/nsp434S34StcTtcC22AY.850.000854
ORF1ab/nsp434S34StcTtcC22AY.9.20.000073
ORF1ab/nsp434S34StcTtcC22AY.920.000575
ORF1ab/nsp434S34FtCttTt22AY.920.000575
ORF1ab/nsp434S34StcTtcC22AY.950.001522
ORF1ab/nsp434S34ITCTATA22B.10.000018
ORF1ab/nsp434S34del1tcTtc-22B.10.000018
ORF1ab/nsp434S34KTCTAAA22B.10.000018
ORF1ab/nsp434S34PTctCct22B.1.10.000036
ORF1ab/nsp434S34ITCTATA12B.1.10.000018
ORF1ab/nsp434S34ITCtATt12B.1.10.000018
ORF1ab/nsp434S34StcTtcC12B.1.10.000018
ORF1ab/nsp434S34TTcTAcA12B.1.10.000018
ORF1ab/nsp434S34TTctAct12B.1.10.000018
ORF1ab/nsp434S34StcTtcA12B.1.10.000018
ORF1ab/nsp434S34FtCttTt22B.1.1.1440.057143
ORF1ab/nsp434S34FtCttTt22B.1.1.2040.006079
ORF1ab/nsp434S34FtCttTt22B.1.1.2160.001781
ORF1ab/nsp434S34FtCttTt22B.1.1.270.011299
ORF1ab/nsp434S34FtCttTt22B.1.1.2800.006173
ORF1ab/nsp434S34FtCttTt22B.1.1.2910.001485
ORF1ab/nsp434S34FtCttTt22B.1.1.2940.002532
ORF1ab/nsp434S34delTCT---22B.1.1.3150.016949
ORF1ab/nsp434S34FtCttTt22B.1.1.3180.000604
ORF1ab/nsp434S34FtCttTt22B.1.1.3330.002153
ORF1ab/nsp434S34FtCttTt22B.1.1.3350.025974
ORF1ab/nsp434S34FtCttTt22B.1.1.3970.004505
ORF1ab/nsp434S34FtCttTt22B.1.1.4160.00181
ORF1ab/nsp434S34FtCttTt22B.1.1.4320.002532
ORF1ab/nsp434S34FtCttTt22B.1.1.4420.037037
ORF1ab/nsp434S34ATctGct22B.1.1.70.000002
ORF1ab/nsp434S34del1tcTtc-22B.1.1.70.000002
ORF1ab/nsp434S34FtCttTt22B.1.1.700.000682
ORF1ab/nsp434S34FtCttTt22B.1.1.890.012121
ORF1ab/nsp434S34FtCttTt22B.1.177.460.001837
ORF1ab/nsp434S34FtCttTt22B.1.177.630.005405
ORF1ab/nsp434S34FtCttTt22B.1.1890.008584
ORF1ab/nsp434S34FtCttTt22B.1.1950.01005
ORF1ab/nsp434S34delTCT---22B.1.20.000018
ORF1ab/nsp434S34YtCttAt22B.1.20.000018
ORF1ab/nsp434S34PTctCct22B.1.20.000018
ORF1ab/nsp434S34TTcTAcA12B.1.2340.000132
ORF1ab/nsp434S34TTctAct12B.1.2340.000132
ORF1ab/nsp434S34FtCttTt22B.1.258.110.000793
ORF1ab/nsp434S34StcTtcC22B.1.3510.000059
ORF1ab/nsp434S34FtCttTt22B.1.36.170.000988
ORF1ab/nsp434S34StcTtcC22B.1.4290.000047
ORF1ab/nsp434S34FtCttTt22B.1.5240.002813
ORF1ab/nsp434S34StcTtcC22B.1.5260.000047
ORF1ab/nsp434S34FtCttTt22B.1.5300.014286
ORF1ab/nsp434S34FtCttTt22B.1.5460.007407
ORF1ab/nsp434S34FtCttTt22B.1.5580.009132
ORF1ab/nsp434S34FtCttTt22B.1.5750.000607
ORF1ab/nsp434S34ITCTATA12B.1.5760.000907
ORF1ab/nsp434S34ITCtATt12B.1.5760.000907
ORF1ab/nsp434S34FtCttTt22B.1.6060.012048
ORF1ab/nsp434S34ITCtATt12B.1.617.20.000004
ORF1ab/nsp434S34ITCTATA12B.1.617.20.000004
ORF1ab/nsp434S34PTcTCcA12B.1.617.20.000004
ORF1ab/nsp434S34PTctCct12B.1.617.20.000004
ORF1ab/nsp434S34FtCttTt22B.30.001661
ORF1ab/nsp434S34FtCttTt22B.60.00182
ORF1ab/nsp434S34FtCttTt22C.1.10.153846
ORF1ab/nsp434S34FtCttTt22C.350.001548
ORF1ab/nsp434S34FtCttTt22D.20.00015
ORF1ab/nsp434S34FtCttTt22P.1.150.000465
ORF1ab/nsp434S34FtCttTt22P.1.170.000324
ORF1ab/nsp434S34FtCttTt22P.1.70.000639
ORF1ab/nsp434S34PTctCct22Q.80.00033
ORF1ab/nsp434S34delTCT---11A.2.40.003367
ORF1ab/nsp434S34StcTtcC11A.2.50.000499
ORF1ab/nsp434S34FtCttTt11A.210.00277
ORF1ab/nsp434S34YtCttAt11A.23.10.000704
ORF1ab/nsp434S34StcTtcC11A.280.002646
ORF1ab/nsp434S34StcTtcC11A.30.002096
ORF1ab/nsp434S34FtCttTt11A.50.001923
ORF1ab/nsp434S34FtCttTt11AA.10.007246
ORF1ab/nsp434S34FtCttTt11AD.20.000219
ORF1ab/nsp434S34FtCttTt11AE.80.000489
ORF1ab/nsp434S34FtCttTt11AH.20.012048
ORF1ab/nsp434S34FtCttTt11AH.30.003802
ORF1ab/nsp434S34del2TCt--t11All0
ORF1ab/nsp434S34DTCtGAt11All0
ORF1ab/nsp434S34FtCttTt11AW.10.003049
ORF1ab/nsp434S34del1Tct-ct11AY.1020.000027
ORF1ab/nsp434S34ATctGct11AY.1030.000006
ORF1ab/nsp434S34FtCttTt11AY.1070.000466
ORF1ab/nsp434S34FtCttTt11AY.1140.000231
ORF1ab/nsp434S34FtCttTt11AY.1160.000287
ORF1ab/nsp434S34FtCttTt11AY.116.10.000311
ORF1ab/nsp434S34PTctCct11AY.120.000316
ORF1ab/nsp434S34FtCttTt11AY.120.2.10.000498
ORF1ab/nsp434S34FtCttTt11AY.220.002092
ORF1ab/nsp434S34NTCtAAt11AY.250.000006
ORF1ab/nsp434S34LtCTtTA11AY.250.000006
ORF1ab/nsp434S34YtCttAt11AY.250.000006
ORF1ab/nsp434S34StcTtcC11AY.250.000006
ORF1ab/nsp434S34ATctGct11AY.250.000006
ORF1ab/nsp434S34KTCTAAA11AY.250.000006
ORF1ab/nsp434S34XtCTtAA11AY.250.000006
ORF1ab/nsp434S34FtCttTt11AY.29.10.000221
ORF1ab/nsp434S34PTctCct11AY.30.00001
ORF1ab/nsp434S34FtCttTt11AY.300.000396
ORF1ab/nsp434S34FtCttTt11AY.34.10.00051
ORF1ab/nsp434S34delTCT---11AY.34.10.00051
ORF1ab/nsp434S34PTctCct11AY.40.000002
ORF1ab/nsp434S34FtCttTt11AY.400.000964
ORF1ab/nsp434S34FtCttTt11AY.410.000294
ORF1ab/nsp434S34StcTtcC11AY.420.00004
ORF1ab/nsp434S34PTctCct11AY.420.00004
ORF1ab/nsp434S34delTCT---11AY.420.00004
ORF1ab/nsp434S34ATctGct11AY.440.000006
ORF1ab/nsp434S34delTCT---11AY.460.000104
ORF1ab/nsp434S34delTCT---11AY.46.20.000635
ORF1ab/nsp434S34StcTtcC11AY.470.000031
ORF1ab/nsp434S34YtCTtAC11AY.480.000465
ORF1ab/nsp434S34FtCttTt11AY.5.30.000337
ORF1ab/nsp434S34FtCttTt11AY.5.40.000277
ORF1ab/nsp434S34FtCttTt11AY.530.000288
ORF1ab/nsp434S34YtCttAt11AY.540.000095
ORF1ab/nsp434S34StcTtcC11AY.550.000917
ORF1ab/nsp434S34FtCttTt11AY.560.001605
ORF1ab/nsp434S34FtCttTt11AY.570.000656
ORF1ab/nsp434S34delTCT---11AY.600.000938
ORF1ab/nsp434S34FtCttTt11AY.630.000387
ORF1ab/nsp434S34StcTtcC11AY.670.000464
ORF1ab/nsp434S34FtCttTt11AY.670.000464
ORF1ab/nsp434S34FtCttTt11AY.680.000274
ORF1ab/nsp434S34StcTtcC11AY.680.000274
ORF1ab/nsp434S34StcTtcC11AY.690.000187
ORF1ab/nsp434S34StcTtcC11AY.700.000209
ORF1ab/nsp434S34FtCttTt11AY.730.000665
ORF1ab/nsp434S34FtCttTt11AY.810.001992
ORF1ab/nsp434S34FtCttTt11AY.830.001724
ORF1ab/nsp434S34FtCttTt11AY.840.000437
ORF1ab/nsp434S34StcTtcC11AY.860.00083
ORF1ab/nsp434S34FtCttTt11AY.860.00083
ORF1ab/nsp434S34StcTtcC11AY.890.004902
ORF1ab/nsp434S34delTCT---11AY.90.000068
ORF1ab/nsp434S34CtCttGt11AY.9.20.000037
ORF1ab/nsp434S34FtCttTt11AY.9.2.10.001976
ORF1ab/nsp434S34FtCttTt11AY.900.000684
ORF1ab/nsp434S34FtCttTt11AY.910.00073
ORF1ab/nsp434S34StcTtcC11AY.930.000273
ORF1ab/nsp434S34StcTtcC11AY.960.002075
ORF1ab/nsp434S34StcTtcC11AY.98.10.000048
ORF1ab/nsp434S34FtCttTt11AZ.50.003509
ORF1ab/nsp434S34XtCTtAA11B.10.000009
ORF1ab/nsp434S34LtCTtTA11B.10.000009
ORF1ab/nsp434S34KTCTAAA11B.1.10.000018
ORF1ab/nsp434S34LtCTtTA11B.1.10.000018
ORF1ab/nsp434S34StcTtcC11B.1.1.1320.014925
ORF1ab/nsp434S34FtCttTt11B.1.1.1410.002012
ORF1ab/nsp434S34FtCttTt11B.1.1.1860.003436
ORF1ab/nsp434S34FtCttTt11B.1.1.1890.001513
ORF1ab/nsp434S34FtCttTt11B.1.1.1980.001468
ORF1ab/nsp434S34FtCttTt11B.1.1.2070.001182
ORF1ab/nsp434S34FtCttTt11B.1.1.2100.005714
ORF1ab/nsp434S34StcTtcA11B.1.1.2200.001859
ORF1ab/nsp434S34FtCttTt11B.1.1.2740.005051
ORF1ab/nsp434S34FtCttTt11B.1.1.2770.000759
ORF1ab/nsp434S34FtCttTt11B.1.1.2790.001121
ORF1ab/nsp434S34FtCttTt11B.1.1.2820.011628
ORF1ab/nsp434S34delTCT---11B.1.1.3060.000438
ORF1ab/nsp434S34TTctAct11B.1.1.3060.000438
ORF1ab/nsp434S34delTCT---11B.1.1.3110.000358
ORF1ab/nsp434S34FtCttTt11B.1.1.3290.003846
ORF1ab/nsp434S34FtCttTt11B.1.1.3480.000796
ORF1ab/nsp434S34FtCttTt11B.1.1.3550.015385
ORF1ab/nsp434S34FtCttTt11B.1.1.3620.005618
ORF1ab/nsp434S34FtCttTt11B.1.1.3830.0625
ORF1ab/nsp434S34FtCttTt11B.1.1.3890.006061
ORF1ab/nsp434S34delTCT---11B.1.1.4090.002833
ORF1ab/nsp434S34FtCttTt11B.1.1.4120.007634
ORF1ab/nsp434S34FtCttTt11B.1.1.4290.004608
ORF1ab/nsp434S34FtCttTt11B.1.1.4480.002033
ORF1ab/nsp434S34FtCttTt11B.1.1.460.004367
ORF1ab/nsp434S34FtCttTt11B.1.1.50.008333
ORF1ab/nsp434S34FtCttTt11B.1.1.5070.008696
ORF1ab/nsp434S34FtCttTt11B.1.1.510.001718
ORF1ab/nsp434S34FtCttTt11B.1.1.5180.006329
ORF1ab/nsp434S34StcTtcG11B.1.1.5190.00004
ORF1ab/nsp434S34delTCT---11B.1.1.5190.00004
ORF1ab/nsp434S34FtCttTt11B.1.1.5210.005348
ORF1ab/nsp434S34StcTtcC11B.1.1.5230.001563
ORF1ab/nsp434S34FtCttTt11B.1.1.540.003021
ORF1ab/nsp434S34FtCttTt11B.1.1.590.006494
ORF1ab/nsp434S34del2TCt--t11B.1.1.70.000001
ORF1ab/nsp434S34delTCT---11B.1.1.700.000341
ORF1ab/nsp434S34FtCttTt11B.1.1110.001175
ORF1ab/nsp434S34delTCT---11B.1.1400.018868
ORF1ab/nsp434S34DTCtGAt11B.1.1570.002985
ORF1ab/nsp434S34delTCT---11B.1.1600.000031
ORF1ab/nsp434S34FtCttTt11B.1.1700.00431
ORF1ab/nsp434S34CtCttGt11B.1.1770.000013
ORF1ab/nsp434S34delTCT---11B.1.177.110.001698
ORF1ab/nsp434S34FtCttTt11B.1.177.170.000821
ORF1ab/nsp434S34FtCttTt11B.1.177.200.001517
ORF1ab/nsp434S34TTctAct11B.1.177.210.000076
ORF1ab/nsp434S34PTctCct11B.1.177.250.014925
ORF1ab/nsp434S34del1tcTtc-11B.1.177.330.001645
ORF1ab/nsp434S34FtCttTt11B.1.177.430.001477
ORF1ab/nsp434S34FtCttTt11B.1.177.540.000606
ORF1ab/nsp434S34delTCT---11B.1.177.570.000281
ORF1ab/nsp434S34FtCttTt11B.1.177.570.000281
ORF1ab/nsp434S34PTctCct11B.1.177.600.000218
ORF1ab/nsp434S34delTCT---11B.1.177.620.001192
ORF1ab/nsp434S34delTCT---11B.1.177.630.002703
ORF1ab/nsp434S34YtCttAt11B.1.177.650.000665
ORF1ab/nsp434S34delTCT---11B.1.177.70.000165
ORF1ab/nsp434S34PTctCct11B.1.177.70.000165
ORF1ab/nsp434S34FtCttTt11B.1.177.820.000477
ORF1ab/nsp434S34delTCT---11B.1.177.830.001481
ORF1ab/nsp434S34FtCttTt11B.1.1800.05
ORF1ab/nsp434S34KTCTAAA11B.1.20.000009
ORF1ab/nsp434S34StcTtcA11B.1.20.000009
ORF1ab/nsp434S34LtCTtTA11B.1.20.000009
ORF1ab/nsp434S34STCtAGt11B.1.2340.000132
ORF1ab/nsp434S34del1tcTtc-11B.1.2340.000132
ORF1ab/nsp434S34RTCTAGA11B.1.2340.000132
ORF1ab/nsp434S34FtCttTt11B.1.2370.004975
ORF1ab/nsp434S34FtCttTt11B.1.258.170.000104
ORF1ab/nsp434S34FtCttTt11B.1.258.20.004505
ORF1ab/nsp434S34FtCttTt11B.1.2840.013158
ORF1ab/nsp434S34FtCttTt11B.1.3050.002151
ORF1ab/nsp434S34FtCttTt11B.1.3460.001311
ORF1ab/nsp434S34FtCttTt11B.1.3490.000715
ORF1ab/nsp434S34FtCttTt11B.1.3500.002933
ORF1ab/nsp434S34FtCttTt11B.1.351.20.000303
ORF1ab/nsp434S34YtCttAt11B.1.351.30.000876
ORF1ab/nsp434S34FtCttTt11B.1.351.50.0006
ORF1ab/nsp434S34StcTtcA11B.1.360.000146
ORF1ab/nsp434S34delTCT---11B.1.36.180.00042
ORF1ab/nsp434S34FtCttTt11B.1.36.290.000517
ORF1ab/nsp434S34FtCttTt11B.1.36.310.001751
ORF1ab/nsp434S34FtCttTt11B.1.36.360.000602
ORF1ab/nsp434S34FtCttTt11B.1.3660.004878
ORF1ab/nsp434S34FtCttTt11B.1.3670.000792
ORF1ab/nsp434S34FtCttTt11B.1.3810.007812
ORF1ab/nsp434S34FtCttTt11B.1.3970.004854
ORF1ab/nsp434S34FtCttTt11B.1.4000.000429
ORF1ab/nsp434S34FtCttTt11B.1.4150.014286
ORF1ab/nsp434S34FtCttTt11B.1.4160.001269
ORF1ab/nsp434S34StcTtcC11B.1.416.10.001563
ORF1ab/nsp434S34FtCttTt11B.1.416.10.001563
ORF1ab/nsp434S34FtCttTt11B.1.4220.000812
ORF1ab/nsp434S34StcTtcC11B.1.4270.00005
ORF1ab/nsp434S34FtCttTt11B.1.4600.017857
ORF1ab/nsp434S34FtCttTt11B.1.4650.003802
ORF1ab/nsp434S34FtCttTt11B.1.4700.001404
ORF1ab/nsp434S34FtCttTt11B.1.4740.001901
ORF1ab/nsp434S34CtCttGt11B.1.4850.014925
ORF1ab/nsp434S34FtCttTt11B.1.5010.007353
ORF1ab/nsp434S34FtCttTt11B.1.5560.007519
ORF1ab/nsp434S34FtCttTt11B.1.564.10.001577
ORF1ab/nsp434S34FtCttTt11B.1.5670.003333
ORF1ab/nsp434S34NTCtAAt11B.1.5740.002151
ORF1ab/nsp434S34FtCttTt11B.1.575.10.002439
ORF1ab/nsp434S34YtCttAt11B.1.5760.000907
ORF1ab/nsp434S34KTCTAAA11B.1.5760.000907
ORF1ab/nsp434S34XtCTtAA11B.1.5760.000907
ORF1ab/nsp434S34NTCtAAt11B.1.5760.000907
ORF1ab/nsp434S34LtCTtTA11B.1.5760.000907
ORF1ab/nsp434S34KTCTAAA11B.1.5770.000687
ORF1ab/nsp434S34XtCTtAA11B.1.5770.000687
ORF1ab/nsp434S34QTCTCAA11B.1.5770.000687
ORF1ab/nsp434S34FtCttTt11B.1.5800.004065
ORF1ab/nsp434S34FtCttTt11B.1.5810.009434
ORF1ab/nsp434S34NTCtAAt11B.1.5960.000087
ORF1ab/nsp434S34del1tCtt-t11B.1.5960.000087
ORF1ab/nsp434S34delTCT---11B.1.5960.000087
ORF1ab/nsp434S34FtCttTt11B.1.6000.005848
ORF1ab/nsp434S34TTctAct11B.1.6090.000479
ORF1ab/nsp434S34FtCttTt11B.1.6120.002653
ORF1ab/nsp434S34FtCttTt11B.1.6160.02439
ORF1ab/nsp434S34del1tCtt-t11B.1.617.10.000129
ORF1ab/nsp434S34KTCTAAA11B.1.617.20.000004
ORF1ab/nsp434S34XtCTtAA11B.1.617.20.000004
ORF1ab/nsp434S34QTCTCAA11B.1.617.20.000004
ORF1ab/nsp434S34NTCtAAt11B.1.617.20.000004
ORF1ab/nsp434S34YtCttAt11B.1.617.20.000004
ORF1ab/nsp434S34HTCtCAt11B.1.617.20.000004
ORF1ab/nsp434S34FtCttTt11B.1.6190.000871
ORF1ab/nsp434S34FtCttTt11B.1.6200.000946
ORF1ab/nsp434S34FtCttTt11B.1.6270.00202
ORF1ab/nsp434S34FtCttTt11B.1.6300.005236
ORF1ab/nsp434S34FtCttTt11B.1.6380.052632
ORF1ab/nsp434S34PTctCct11B.1.700.02439
ORF1ab/nsp434S34FtCttTt11B.1.780.008547
ORF1ab/nsp434S34FtCttTt11B.1.88.10.004808
ORF1ab/nsp434S34FtCttTt11B.40.002208
ORF1ab/nsp434S34FtCttTt11B.4.60.016667
ORF1ab/nsp434S34YtCttAt11B.60.00091
ORF1ab/nsp434S34PTctCct11B.6.30.026316
ORF1ab/nsp434S34FtCttTt11B.6.80.008264
ORF1ab/nsp434S34FtCttTt11C.110.010638
ORF1ab/nsp434S34STCtAGt11C.350.000774
ORF1ab/nsp434S34FtCttTt11C.36.10.004149
ORF1ab/nsp434S34delTCT---11C.370.000116
ORF1ab/nsp434S34ATctGct11D.20.000075
ORF1ab/nsp434S34StcTtcA11D.30.005917
ORF1ab/nsp434S34FtCttTt11N.50.001767
ORF1ab/nsp434S34QTCTCAA11P.10.000016
ORF1ab/nsp434S34HTCtCAt11P.10.000016
ORF1ab/nsp434S34FtCttTt11P.1.110.010204
ORF1ab/nsp434S34FtCttTt11P.1.120.000484
ORF1ab/nsp434S34FtCttTt11Q.20.000613
ORF1ab/nsp434S34FtCttTt11Q.60.006623
ORF1ab/nsp434S34FtCttTt11R.10.00009
ORF1ab/nsp434S34delTCT---11U.30.003861