CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 337 & Codon = ttT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4337F337FF3100FsynttCttT198021980219563-9565

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4337F337FttCttT1980219802All0.003787
ORF1ab/nsp4337F337FttCttT84238423B.1.5250.953152
ORF1ab/nsp4337F337FttCttT35963596B.1.1.70.003219
ORF1ab/nsp4337F337FttCttT14781478AY.250.00889
ORF1ab/nsp4337F337FttCttT778778AY.40.001211
ORF1ab/nsp4337F337FttCttT499499B.1.20.004394
ORF1ab/nsp4337F337FttCttT381381B.1.617.20.001435
ORF1ab/nsp4337F337FttCttT357357B.10.00327
ORF1ab/nsp4337F337FttCttT355355P.1.10.11277
ORF1ab/nsp4337F337FttCttT306306AY.30.003044
ORF1ab/nsp4337F337FttCttT227227AY.430.001006
ORF1ab/nsp4337F337FttCttT207207AY.440.00126
ORF1ab/nsp4337F337FttCttT188188AY.4.20.004077
ORF1ab/nsp4337F337FttCttT172172B.1.1.1890.260212
ORF1ab/nsp4337F337FttCttT158158B.1.10.002866
ORF1ab/nsp4337F337FttCttT154154P.10.002426
ORF1ab/nsp4337F337FttCttT120120B.1.1770.00158
ORF1ab/nsp4337F337FttCttT9898B.1.4290.002306
ORF1ab/nsp4337F337FttCttT8888AY.1030.000546
ORF1ab/nsp4337F337FttCttT8686Q.80.014182
ORF1ab/nsp4337F337FttCttT6767B.1.5560.503759
ORF1ab/nsp4337F337FttCttT6161B.1.1600.001902
ORF1ab/nsp4337F337FttCttT5353B.1.5260.001246
ORF1ab/nsp4337F337FttCttT5151AY.390.00126
ORF1ab/nsp4337F337FttCttT5151B.1.5960.004444
ORF1ab/nsp4337F337FttCttT4646B.1.1.2140.002551
ORF1ab/nsp4337F337FttCttT4444B.1.3510.001308
ORF1ab/nsp4337F337FttCttT4444B.1.4270.002222
ORF1ab/nsp4337F337FttCttT4242B.1.177.680.636364
ORF1ab/nsp4337F337FttCttT4242B.1.5950.01096
ORF1ab/nsp4337F337FttCttT4141AN.10.82
ORF1ab/nsp4337F337FttCttT4141B.1.4700.057584
ORF1ab/nsp4337F337FttCttT4040AY.260.001132
ORF1ab/nsp4337F337FttCttT3636AY.470.00112
ORF1ab/nsp4337F337FttCttT3636B.1.30.094241
ORF1ab/nsp4337F337FttCttT3434AY.9.10.002847
ORF1ab/nsp4337F337FttCttT3333AY.1000.001518
ORF1ab/nsp4337F337FttCttT3333AY.1020.000875
ORF1ab/nsp4337F337FttCttT3030AY.1190.001059
ORF1ab/nsp4337F337FttCttT2828AY.750.001569
ORF1ab/nsp4337F337FttCttT2828B.1.258.170.002911
ORF1ab/nsp4337F337FttCttT2727B.1.36.350.070312
ORF1ab/nsp4337F337FttCttT2525AY.1060.008372
ORF1ab/nsp4337F337FttCttT2525B.1.1.5190.000993
ORF1ab/nsp4337F337FttCttT2525B.1.1.5210.13369
ORF1ab/nsp4337F337FttCttT2424AY.200.000933
ORF1ab/nsp4337F337FttCttT2424AY.3.10.002046
ORF1ab/nsp4337F337FttCttT2424AY.9.20.000882
ORF1ab/nsp4337F337FttCttT2222AY.50.000454
ORF1ab/nsp4337F337FttCttT2121B.1.4740.039924
ORF1ab/nsp4337F337FttCttT2020AY.290.000315
ORF1ab/nsp4337F337FttCttT2020P.1.140.000956
ORF1ab/nsp4337F337FttCttT1919B.1.2580.001264
ORF1ab/nsp4337F337FttCttT1919B.1.6210.001682
ORF1ab/nsp4337F337FttCttT1919B.1.6260.108571
ORF1ab/nsp4337F337FttCttT1818AY.1180.001128
ORF1ab/nsp4337F337FttCttT1717AY.230.001186
ORF1ab/nsp4337F337FttCttT1717B.1.617.10.002192
ORF1ab/nsp4337F337FttCttT1616AY.1170.001352
ORF1ab/nsp4337F337FttCttT1515AY.60.000617
ORF1ab/nsp4337F337FttCttT1515B.1.2210.001065
ORF1ab/nsp4337F337FttCttT1515B.1.5750.004551
ORF1ab/nsp4337F337FttCttT1515B.1.6370.001096
ORF1ab/nsp4337F337FttCttT1414AY.600.013133
ORF1ab/nsp4337F337FttCttT1313AY.340.001261
ORF1ab/nsp4337F337FttCttT1313B.1.2430.000905
ORF1ab/nsp4337F337FttCttT1313C.370.001509
ORF1ab/nsp4337F337FttCttT1212AY.1110.002198
ORF1ab/nsp4337F337FttCttT1212AY.610.001257
ORF1ab/nsp4337F337FttCttT1212AY.99.20.001106
ORF1ab/nsp4337F337FttCttT1212B.1.1.3060.005261
ORF1ab/nsp4337F337FttCttT1111AY.1200.000409
ORF1ab/nsp4337F337FttCttT1111AY.1210.001488
ORF1ab/nsp4337F337FttCttT1111AY.330.000735
ORF1ab/nsp4337F337FttCttT1111AY.39.10.000436
ORF1ab/nsp4337F337FttCttT1111AY.420.000443
ORF1ab/nsp4337F337FttCttT1111B.1.1.2910.008166
ORF1ab/nsp4337F337FttCttT1111B.1.1990.045455
ORF1ab/nsp4337F337FttCttT1111B.1.2400.002371
ORF1ab/nsp4337F337FttCttT1010A.2.50.00499
ORF1ab/nsp4337F337FttCttT1010B.1.1.10.003267
ORF1ab/nsp4337F337FttCttT1010B.1.360.001459
ORF1ab/nsp4337F337FttCttT1010B.1.5650.008104
ORF1ab/nsp4337F337FttCttT1010D.20.00075
ORF1ab/nsp4337F337FttCttT99AY.1160.002581
ORF1ab/nsp4337F337FttCttT99AY.460.000937
ORF1ab/nsp4337F337FttCttT99B.1.1.4300.375
ORF1ab/nsp4337F337FttCttT99B.1.351.30.007888
ORF1ab/nsp4337F337FttCttT99B.1.5610.003573
ORF1ab/nsp4337F337FttCttT99Q.40.004093
ORF1ab/nsp4337F337FttCttT88AY.540.000763
ORF1ab/nsp4337F337FttCttT88AY.700.001668
ORF1ab/nsp4337F337FttCttT88AY.920.002298
ORF1ab/nsp4337F337FttCttT88B.1.351.20.002421
ORF1ab/nsp4337F337FttCttT88B.1.6090.003835
ORF1ab/nsp4337F337FttCttT88P.1.100.002156
ORF1ab/nsp4337F337FttCttT77AD.20.001533
ORF1ab/nsp4337F337FttCttT77AY.120.002212
ORF1ab/nsp4337F337FttCttT77B.1.1.3540.030702
ORF1ab/nsp4337F337FttCttT77B.1.177.570.001967
ORF1ab/nsp4337F337FttCttT77B.1.3690.001997
ORF1ab/nsp4337F337FttCttT66AY.350.001398
ORF1ab/nsp4337F337FttCttT66AY.740.000694
ORF1ab/nsp4337F337FttCttT66B.1.1420.017391
ORF1ab/nsp4337F337FttCttT66B.1.160.140.012712
ORF1ab/nsp4337F337FttCttT66B.1.36.360.003612
ORF1ab/nsp4337F337FttCttT66B.1.4000.002574
ORF1ab/nsp4337F337FttCttT66B.1.438.10.000644
ORF1ab/nsp4337F337FttCttT66B.1.5510.007742
ORF1ab/nsp4337F337FttCttT55AY.1130.000712
ORF1ab/nsp4337F337FttCttT55AY.690.000933
ORF1ab/nsp4337F337FttCttT55B0.000639
ORF1ab/nsp4337F337FttCttT55B.1.1.1740.016892
ORF1ab/nsp4337F337FttCttT55B.1.1.280.001556
ORF1ab/nsp4337F337FttCttT55B.1.1280.003177
ORF1ab/nsp4337F337FttCttT55B.1.177.560.003338
ORF1ab/nsp4337F337FttCttT55B.1.2060.004078
ORF1ab/nsp4337F337FttCttT55B.1.258.90.025
ORF1ab/nsp4337F337FttCttT55B.1.36.290.002587
ORF1ab/nsp4337F337FttCttT55P.1.120.00242
ORF1ab/nsp4337F337FttCttT44AY.1070.001864
ORF1ab/nsp4337F337FttCttT44AY.360.000593
ORF1ab/nsp4337F337FttCttT44AY.450.000487
ORF1ab/nsp4337F337FttCttT44AY.650.002132
ORF1ab/nsp4337F337FttCttT44AY.90.00027
ORF1ab/nsp4337F337FttCttT44AY.980.000316
ORF1ab/nsp4337F337FttCttT44AY.98.10.000194
ORF1ab/nsp4337F337FttCttT44B.1.1.1530.004381
ORF1ab/nsp4337F337FttCttT44B.1.1.2220.000816
ORF1ab/nsp4337F337FttCttT44B.1.1.2840.00043
ORF1ab/nsp4337F337FttCttT44B.1.1.3480.003185
ORF1ab/nsp4337F337FttCttT44B.1.1.4340.001394
ORF1ab/nsp4337F337FttCttT44B.1.177.210.000306
ORF1ab/nsp4337F337FttCttT44B.1.3110.001098
ORF1ab/nsp4337F337FttCttT44B.1.36.180.001681
ORF1ab/nsp4337F337FttCttT44B.1.4160.005076
ORF1ab/nsp4337F337FttCttT44P.20.000747
ORF1ab/nsp4337F337FttCttT44R.10.00036
ORF1ab/nsp4337F337FttCttT33A.10.000846
ORF1ab/nsp4337F337FttCttT33AY.1050.001929
ORF1ab/nsp4337F337FttCttT33AY.160.001139
ORF1ab/nsp4337F337FttCttT33AY.320.001597
ORF1ab/nsp4337F337FttCttT33AY.34.10.00153
ORF1ab/nsp4337F337FttCttT33AY.4.50.000322
ORF1ab/nsp4337F337FttCttT33AY.410.000882
ORF1ab/nsp4337F337FttCttT33AY.46.50.000595
ORF1ab/nsp4337F337FttCttT33AY.46.60.000217
ORF1ab/nsp4337F337FttCttT33AY.520.002443
ORF1ab/nsp4337F337FttCttT33AY.630.001161
ORF1ab/nsp4337F337FttCttT33AY.75.10.000541
ORF1ab/nsp4337F337FttCttT33B.1.1.1290.027523
ORF1ab/nsp4337F337FttCttT33B.1.1.2200.005576
ORF1ab/nsp4337F337FttCttT33B.1.1.2690.00406
ORF1ab/nsp4337F337FttCttT33B.1.1.2940.003797
ORF1ab/nsp4337F337FttCttT33B.1.1.370.000579
ORF1ab/nsp4337F337FttCttT33B.1.1.630.001157
ORF1ab/nsp4337F337FttCttT33B.1.177.120.000455
ORF1ab/nsp4337F337FttCttT33B.1.1950.015075
ORF1ab/nsp4337F337FttCttT33B.1.3750.002459
ORF1ab/nsp4337F337FttCttT33B.1.4680.017143
ORF1ab/nsp4337F337FttCttT33B.1.5640.001278
ORF1ab/nsp4337F337FttCttT33B.1.5780.053571
ORF1ab/nsp4337F337FttCttT33B.1.6020.019608
ORF1ab/nsp4337F337FttCttT33B.1.6190.002613
ORF1ab/nsp4337F337FttCttT33B.1.6280.001057
ORF1ab/nsp4337F337FttCttT22A0.000774
ORF1ab/nsp4337F337FttCttT22A.210.00554
ORF1ab/nsp4337F337FttCttT22A.23.10.001408
ORF1ab/nsp4337F337FttCttT22AU.30.004219
ORF1ab/nsp4337F337FttCttT22AY.140.000176
ORF1ab/nsp4337F337FttCttT22AY.16.10.00094
ORF1ab/nsp4337F337FttCttT22AY.4.2.10.000298
ORF1ab/nsp4337F337FttCttT22AY.4.40.000818
ORF1ab/nsp4337F337FttCttT22AY.530.000575
ORF1ab/nsp4337F337FttCttT22AY.590.001059
ORF1ab/nsp4337F337FttCttT22AY.640.00119
ORF1ab/nsp4337F337FttCttT22AY.70.000392
ORF1ab/nsp4337F337FttCttT22AY.7.10.000225
ORF1ab/nsp4337F337FttCttT22AY.770.002255
ORF1ab/nsp4337F337FttCttT22AY.830.003448
ORF1ab/nsp4337F337FttCttT22B.1.1.1480.017544
ORF1ab/nsp4337F337FttCttT22B.1.1.330.000842
ORF1ab/nsp4337F337FttCttT22B.1.1.4090.005666
ORF1ab/nsp4337F337FttCttT22B.1.1.5140.076923
ORF1ab/nsp4337F337FttCttT22B.1.177.530.004785
ORF1ab/nsp4337F337FttCttT22B.1.177.600.000437
ORF1ab/nsp4337F337FttCttT22B.1.177.810.000379
ORF1ab/nsp4337F337FttCttT22B.1.2340.000264
ORF1ab/nsp4337F337FttCttT22B.1.258.110.000793
ORF1ab/nsp4337F337FttCttT22B.1.258.240.021505
ORF1ab/nsp4337F337FttCttT22B.1.2810.043478
ORF1ab/nsp4337F337FttCttT22B.1.36.160.002849
ORF1ab/nsp4337F337FttCttT22B.1.3990.003868
ORF1ab/nsp4337F337FttCttT22B.1.4990.002101
ORF1ab/nsp4337F337FttCttT22B.1.5670.006667
ORF1ab/nsp4337F337FttCttT22B.1.595.10.011696
ORF1ab/nsp4337F337FttCttT22B.1.5990.007299
ORF1ab/nsp4337F337FttCttT22B.1.621.10.001012
ORF1ab/nsp4337F337FttCttT22C.160.002121
ORF1ab/nsp4337F337FttCttT22N.50.003534
ORF1ab/nsp4337F337FttCttT22P.1.60.003891
ORF1ab/nsp4337F337FttCttT22P.1.70.000639
ORF1ab/nsp4337F337FttCttT11A.2.5.20.001572
ORF1ab/nsp4337F337FttCttT11A.30.002096
ORF1ab/nsp4337F337FttCttT11AE.70.083333
ORF1ab/nsp4337F337FttCttT11AY.10.000396
ORF1ab/nsp4337F337FttCttT11AY.100.00053
ORF1ab/nsp4337F337FttCttT11AY.1040.001984
ORF1ab/nsp4337F337FttCttT11AY.1080.001103
ORF1ab/nsp4337F337FttCttT11AY.1090.00074
ORF1ab/nsp4337F337FttCttT11AY.1140.000231
ORF1ab/nsp4337F337FttCttT11AY.116.10.000311
ORF1ab/nsp4337F337FttCttT11AY.130.000161
ORF1ab/nsp4337F337FttCttT11AY.20.000356
ORF1ab/nsp4337F337FttCttT11AY.23.10.000417
ORF1ab/nsp4337F337FttCttT11AY.270.000065
ORF1ab/nsp4337F337FttCttT11AY.29.10.000221
ORF1ab/nsp4337F337FttCttT11AY.46.40.000165
ORF1ab/nsp4337F337FttCttT11AY.480.000465
ORF1ab/nsp4337F337FttCttT11AY.490.003195
ORF1ab/nsp4337F337FttCttT11AY.5.30.000337
ORF1ab/nsp4337F337FttCttT11AY.5.40.000277
ORF1ab/nsp4337F337FttCttT11AY.580.000907
ORF1ab/nsp4337F337FttCttT11AY.620.000436
ORF1ab/nsp4337F337FttCttT11AY.670.000464
ORF1ab/nsp4337F337FttCttT11AY.710.000475
ORF1ab/nsp4337F337FttCttT11AY.730.000665
ORF1ab/nsp4337F337FttCttT11AY.80.000606
ORF1ab/nsp4337F337FttCttT11AY.840.000437
ORF1ab/nsp4337F337FttCttT11AY.880.000884
ORF1ab/nsp4337F337FttCttT11AY.990.001049
ORF1ab/nsp4337F337FttCttT11B.1.1.1660.033333
ORF1ab/nsp4337F337FttCttT11B.1.1.2050.003717
ORF1ab/nsp4337F337FttCttT11B.1.1.2160.00089
ORF1ab/nsp4337F337FttCttT11B.1.1.250.000569
ORF1ab/nsp4337F337FttCttT11B.1.1.2630.001558
ORF1ab/nsp4337F337FttCttT11B.1.1.2650.003155
ORF1ab/nsp4337F337FttCttT11B.1.1.2770.000759
ORF1ab/nsp4337F337FttCttT11B.1.1.2800.003086
ORF1ab/nsp4337F337FttCttT11B.1.1.3170.000412
ORF1ab/nsp4337F337FttCttT11B.1.1.3180.000302
ORF1ab/nsp4337F337FttCttT11B.1.1.3350.012987
ORF1ab/nsp4337F337FttCttT11B.1.1.3370.003597
ORF1ab/nsp4337F337FttCttT11B.1.1.3600.03125
ORF1ab/nsp4337F337FttCttT11B.1.1.3700.012658
ORF1ab/nsp4337F337FttCttT11B.1.1.3720.000689
ORF1ab/nsp4337F337FttCttT11B.1.1.390.00051
ORF1ab/nsp4337F337FttCttT11B.1.1.3970.002252
ORF1ab/nsp4337F337FttCttT11B.1.1.4190.007407
ORF1ab/nsp4337F337FttCttT11B.1.1.4640.001473
ORF1ab/nsp4337F337FttCttT11B.1.1.470.005348
ORF1ab/nsp4337F337FttCttT11B.1.1.500.000679
ORF1ab/nsp4337F337FttCttT11B.1.1.5130.012346
ORF1ab/nsp4337F337FttCttT11B.1.1.5180.006329
ORF1ab/nsp4337F337FttCttT11B.1.1.5230.001563
ORF1ab/nsp4337F337FttCttT11B.1.1030.019231
ORF1ab/nsp4337F337FttCttT11B.1.1040.00369
ORF1ab/nsp4337F337FttCttT11B.1.110.30.000718
ORF1ab/nsp4337F337FttCttT11B.1.160.150.00495
ORF1ab/nsp4337F337FttCttT11B.1.1730.026316
ORF1ab/nsp4337F337FttCttT11B.1.177.100.000878
ORF1ab/nsp4337F337FttCttT11B.1.177.150.000631
ORF1ab/nsp4337F337FttCttT11B.1.177.160.000664
ORF1ab/nsp4337F337FttCttT11B.1.177.40.000211
ORF1ab/nsp4337F337FttCttT11B.1.177.460.000918
ORF1ab/nsp4337F337FttCttT11B.1.177.520.001757
ORF1ab/nsp4337F337FttCttT11B.1.177.70.000165
ORF1ab/nsp4337F337FttCttT11B.1.2010.005682
ORF1ab/nsp4337F337FttCttT11B.1.2120.016667
ORF1ab/nsp4337F337FttCttT11B.1.2230.002778
ORF1ab/nsp4337F337FttCttT11B.1.2360.002053
ORF1ab/nsp4337F337FttCttT11B.1.243.10.022222
ORF1ab/nsp4337F337FttCttT11B.1.258.200.015873
ORF1ab/nsp4337F337FttCttT11B.1.2790.000514
ORF1ab/nsp4337F337FttCttT11B.1.2980.002114
ORF1ab/nsp4337F337FttCttT11B.1.3320.003497
ORF1ab/nsp4337F337FttCttT11B.1.36.100.004785
ORF1ab/nsp4337F337FttCttT11B.1.36.220.001208
ORF1ab/nsp4337F337FttCttT11B.1.36.80.001
ORF1ab/nsp4337F337FttCttT11B.1.3960.000706
ORF1ab/nsp4337F337FttCttT11B.1.4040.001302
ORF1ab/nsp4337F337FttCttT11B.1.4050.012346
ORF1ab/nsp4337F337FttCttT11B.1.4090.000781
ORF1ab/nsp4337F337FttCttT11B.1.4620.007246
ORF1ab/nsp4337F337FttCttT11B.1.466.20.000391
ORF1ab/nsp4337F337FttCttT11B.1.5170.000427
ORF1ab/nsp4337F337FttCttT11B.1.5460.003704
ORF1ab/nsp4337F337FttCttT11B.1.5540.004405
ORF1ab/nsp4337F337FttCttT11B.1.5600.00463
ORF1ab/nsp4337F337FttCttT11B.1.5680.001111
ORF1ab/nsp4337F337FttCttT11B.1.5700.002941
ORF1ab/nsp4337F337FttCttT11B.1.5870.001898
ORF1ab/nsp4337F337FttCttT11B.1.6200.000946
ORF1ab/nsp4337F337FttCttT11B.1.940.027027
ORF1ab/nsp4337F337FttCttT11B.4.10.018868
ORF1ab/nsp4337F337FttCttT11B.600.015873
ORF1ab/nsp4337F337FttCttT11C.140.004329
ORF1ab/nsp4337F337FttCttT11C.400.027778
ORF1ab/nsp4337F337FttCttT11L.10.001905
ORF1ab/nsp4337F337FttCttT11L.30.003546
ORF1ab/nsp4337F337FttCttT11P.1.170.000162
ORF1ab/nsp4337F337FttCttT11P.1.20.001156
ORF1ab/nsp4337F337FttCttT11Q.30.000145
ORF1ab/nsp4337F337FttCttT11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.