CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 325

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4325S325SS3088SsyntcAtcG572756800.9917939527-9529
ORF1ab/nsp4325S325SS3088SsyntcAtcT5727380.006635249527-9529
ORF1ab/nsp4325S325SS3088SsyntcAtcC572790.00157159527-9529
ORF1ab/nsp4325S325delS3088deldelTCA---24924919527-9529
ORF1ab/nsp4325S325LS3088LnonsyntCatTa151519527-9529
ORF1ab/nsp4325S325XS3088XnonsyntCatAa111119527-9529
ORF1ab/nsp4325S325del1S3088del1delTca-ca960.6666679527-9529
ORF1ab/nsp4325S325del1S3088del1deltcAtc-920.2222229527-9529
ORF1ab/nsp4325S325del1S3088del1deltCat-a910.1111119527-9529
ORF1ab/nsp4325S325PS3088PnonsynTcaCca8819527-9529
ORF1ab/nsp4325S325del2S3088del2delTCa--a3319527-9529
ORF1ab/nsp4325S325TS3088TnonsynTcaAca3319527-9529
ORF1ab/nsp4325S325FS3088FnonsyntCAtTT2219527-9529
ORF1ab/nsp4325S325CS3088CnonsyntCAtGT1119527-9529
ORF1ab/nsp4325S325AS3088AnonsynTcaGca1119527-9529

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4325S325StcAtcG56805727All0.001086
ORF1ab/nsp4325S325StcAtcT385727All0.000007
ORF1ab/nsp4325S325StcAtcC95727All0.000002
ORF1ab/nsp4325S325StcAtcG50515051Q.30.73256
ORF1ab/nsp4325S325delTCA---249249All0.000048
ORF1ab/nsp4325S325StcAtcG127129B.1.1770.001672
ORF1ab/nsp4325S325StcAtcT2129B.1.1770.000026
ORF1ab/nsp4325S325delTCA---119119B.1.1.70.000107
ORF1ab/nsp4325S325StcAtcG9496B.1.617.20.000354
ORF1ab/nsp4325S325StcAtcT296B.1.617.20.000008
ORF1ab/nsp4325S325StcAtcG8287B.1.1.70.000073
ORF1ab/nsp4325S325StcAtcT587B.1.1.70.000004
ORF1ab/nsp4325S325StcAtcG4545AY.200.001749
ORF1ab/nsp4325S325StcAtcG4343AY.98.10.002083
ORF1ab/nsp4325S325StcAtcG3336AY.40.000051
ORF1ab/nsp4325S325StcAtcT336AY.40.000005
ORF1ab/nsp4325S325StcAtcG3434B.1.6190.029617
ORF1ab/nsp4325S325StcAtcG2124AY.250.000126
ORF1ab/nsp4325S325StcAtcC224AY.250.000012
ORF1ab/nsp4325S325StcAtcT124AY.250.000006
ORF1ab/nsp4325S325delTCA---1919AY.40.00003
ORF1ab/nsp4325S325StcAtcT1018AY.290.000158
ORF1ab/nsp4325S325StcAtcG818AY.290.000126
ORF1ab/nsp4325S325delTCA---1818B.1.1770.000237
ORF1ab/nsp4325S325StcAtcG1116B.1.20.000097
ORF1ab/nsp4325S325StcAtcC416B.1.20.000035
ORF1ab/nsp4325S325StcAtcT116B.1.20.000009
ORF1ab/nsp4325S325LtCatTa1515All0.000003
ORF1ab/nsp4325S325StcAtcG1114AY.1020.000292
ORF1ab/nsp4325S325StcAtcT314AY.1020.00008
ORF1ab/nsp4325S325StcAtcG1212AY.430.000053
ORF1ab/nsp4325S325StcAtcG912B.10.000082
ORF1ab/nsp4325S325StcAtcT212B.10.000018
ORF1ab/nsp4325S325StcAtcC112B.10.000009
ORF1ab/nsp4325S325XtCatAa1111All0.000002
ORF1ab/nsp4325S325del1Tca-ca69All0.000001
ORF1ab/nsp4325S325del1tcAtc-29All0
ORF1ab/nsp4325S325del1tCat-a19All0
ORF1ab/nsp4325S325StcAtcG89AY.1030.00005
ORF1ab/nsp4325S325StcAtcC19AY.1030.000006
ORF1ab/nsp4325S325StcAtcG69AY.260.00017
ORF1ab/nsp4325S325StcAtcT39AY.260.000085
ORF1ab/nsp4325S325delTCA---99AY.4.50.000967
ORF1ab/nsp4325S325PTcaCca88All0.000002
ORF1ab/nsp4325S325StcAtcG78B.1.10.000127
ORF1ab/nsp4325S325StcAtcT18B.1.10.000018
ORF1ab/nsp4325S325StcAtcG66P.10.000095
ORF1ab/nsp4325S325delTCA---55AY.430.000022
ORF1ab/nsp4325S325StcAtcG55AY.440.00003
ORF1ab/nsp4325S325delTCA---55B.1.617.20.000019
ORF1ab/nsp4325S325delTCA---44AY.250.000024
ORF1ab/nsp4325S325XtCatAa44B.10.000037
ORF1ab/nsp4325S325delTCA---44B.1.177.40.000844
ORF1ab/nsp4325S325delTCA---44B.1.20.000035
ORF1ab/nsp4325S325TTcaAca33All0.000001
ORF1ab/nsp4325S325del2TCa--a33All0.000001
ORF1ab/nsp4325S325StcAtcG33AY.30.00003
ORF1ab/nsp4325S325StcAtcG33AY.90.000203
ORF1ab/nsp4325S325StcAtcG33AY.980.000237
ORF1ab/nsp4325S325del1Tca-ca33B.1.1.70.000003
ORF1ab/nsp4325S325StcAtcG23B.1.1600.000062
ORF1ab/nsp4325S325StcAtcC13B.1.1600.000031
ORF1ab/nsp4325S325del1Tca-ca23B.1.1770.000026
ORF1ab/nsp4325S325del1tcAtc-13B.1.1770.000013
ORF1ab/nsp4325S325delTCA---33B.1.177.870.002183
ORF1ab/nsp4325S325StcAtcG33B.1.5760.00272
ORF1ab/nsp4325S325StcAtcG23D.20.00015
ORF1ab/nsp4325S325StcAtcT13D.20.000075
ORF1ab/nsp4325S325StcAtcG33Q.80.000495
ORF1ab/nsp4325S325FtCAtTT22All0
ORF1ab/nsp4325S325StcAtcG22AY.1080.002205
ORF1ab/nsp4325S325delTCA---22AY.1110.000366
ORF1ab/nsp4325S325delTCA---22AY.1200.000074
ORF1ab/nsp4325S325delTCA---22AY.260.000057
ORF1ab/nsp4325S325delTCA---22AY.4.20.000043
ORF1ab/nsp4325S325StcAtcG22AY.460.000208
ORF1ab/nsp4325S325StcAtcT12AY.50.000021
ORF1ab/nsp4325S325StcAtcG12AY.50.000021
ORF1ab/nsp4325S325StcAtcG22AY.540.000191
ORF1ab/nsp4325S325StcAtcG22AY.75.10.000361
ORF1ab/nsp4325S325delTCA---22AY.90.000135
ORF1ab/nsp4325S325delTCA---22B.1.1.3110.000716
ORF1ab/nsp4325S325delTCA---22B.1.1.3120.003824
ORF1ab/nsp4325S325LtCatTa22B.1.1.70.000002
ORF1ab/nsp4325S325del2TCa--a22B.1.1.70.000002
ORF1ab/nsp4325S325delTCA---22B.1.177.160.001329
ORF1ab/nsp4325S325StcAtcG22B.1.2060.001631
ORF1ab/nsp4325S325StcAtcG22C.10.004785
ORF1ab/nsp4325S325delTCA---11A0.000387
ORF1ab/nsp4325S325delTCA---11AD.20.000219
ORF1ab/nsp4325S325ATcaGca11All0
ORF1ab/nsp4325S325CtCAtGT11All0
ORF1ab/nsp4325S325StcAtcG11AY.1000.000046
ORF1ab/nsp4325S325StcAtcG11AY.1060.000335
ORF1ab/nsp4325S325StcAtcG11AY.1190.000035
ORF1ab/nsp4325S325StcAtcG11AY.120.000316
ORF1ab/nsp4325S325StcAtcT11AY.140.000088
ORF1ab/nsp4325S325delTCA---11AY.190.00114
ORF1ab/nsp4325S325StcAtcG11AY.230.00007
ORF1ab/nsp4325S325FtCAtTT11AY.240.000431
ORF1ab/nsp4325S325LtCatTa11AY.250.000006
ORF1ab/nsp4325S325del1tCat-a11AY.250.000006
ORF1ab/nsp4325S325TTcaAca11AY.250.000006
ORF1ab/nsp4325S325PTcaCca11AY.260.000028
ORF1ab/nsp4325S325PTcaCca11AY.40.000002
ORF1ab/nsp4325S325LtCatTa11AY.40.000002
ORF1ab/nsp4325S325StcAtcG11AY.4.20.000022
ORF1ab/nsp4325S325delTCA---11AY.420.00004
ORF1ab/nsp4325S325StcAtcG11AY.420.00004
ORF1ab/nsp4325S325TTcaAca11AY.430.000004
ORF1ab/nsp4325S325delTCA---11AY.440.000006
ORF1ab/nsp4325S325PTcaCca11AY.440.000006
ORF1ab/nsp4325S325StcAtcG11AY.450.000122
ORF1ab/nsp4325S325delTCA---11AY.46.20.000635
ORF1ab/nsp4325S325StcAtcG11AY.470.000031
ORF1ab/nsp4325S325delTCA---11AY.5.30.000337
ORF1ab/nsp4325S325XtCatAa11AY.520.000814
ORF1ab/nsp4325S325delTCA---11AY.60.000041
ORF1ab/nsp4325S325StcAtcT11AY.60.000041
ORF1ab/nsp4325S325del1Tca-ca11AY.60.000041
ORF1ab/nsp4325S325delTCA---11AY.600.000938
ORF1ab/nsp4325S325StcAtcG11AY.610.000105
ORF1ab/nsp4325S325StcAtcG11AY.690.000187
ORF1ab/nsp4325S325LtCatTa11AY.750.000056
ORF1ab/nsp4325S325delTCA---11AY.780.001541
ORF1ab/nsp4325S325delTCA---11AY.990.001049
ORF1ab/nsp4325S325delTCA---11AY.99.10.001553
ORF1ab/nsp4325S325StcAtcG11AY.99.20.000092
ORF1ab/nsp4325S325StcAtcG11B0.000128
ORF1ab/nsp4325S325LtCatTa11B.10.000009
ORF1ab/nsp4325S325delTCA---11B.10.000009
ORF1ab/nsp4325S325XtCatAa11B.1.10.000018
ORF1ab/nsp4325S325delTCA---11B.1.10.000018
ORF1ab/nsp4325S325LtCatTa11B.1.10.000018
ORF1ab/nsp4325S325StcAtcG11B.1.1.10.000327
ORF1ab/nsp4325S325delTCA---11B.1.1.1390.022727
ORF1ab/nsp4325S325LtCatTa11B.1.1.1610.003534
ORF1ab/nsp4325S325LtCatTa11B.1.1.2940.001266
ORF1ab/nsp4325S325StcAtcG11B.1.1.3060.000438
ORF1ab/nsp4325S325delTCA---11B.1.1.3610.045455
ORF1ab/nsp4325S325PTcaCca11B.1.1.390.00051
ORF1ab/nsp4325S325delTCA---11B.1.1.4200.001006
ORF1ab/nsp4325S325PTcaCca11B.1.1.5190.00004
ORF1ab/nsp4325S325StcAtcG11B.1.1.5190.00004
ORF1ab/nsp4325S325StcAtcG11B.1.1.5240.020833
ORF1ab/nsp4325S325XtCatAa11B.1.1.70.000001
ORF1ab/nsp4325S325delTCA---11B.1.1.700.000341
ORF1ab/nsp4325S325StcAtcG11B.1.1260.001276
ORF1ab/nsp4325S325StcAtcG11B.1.1460.004237
ORF1ab/nsp4325S325delTCA---11B.1.1600.000031
ORF1ab/nsp4325S325LtCatTa11B.1.1600.000031
ORF1ab/nsp4325S325delTCA---11B.1.160.230.004831
ORF1ab/nsp4325S325delTCA---11B.1.160.70.002079
ORF1ab/nsp4325S325del2TCa--a11B.1.1770.000013
ORF1ab/nsp4325S325TTcaAca11B.1.1770.000013
ORF1ab/nsp4325S325delTCA---11B.1.177.110.001698
ORF1ab/nsp4325S325delTCA---11B.1.177.150.000631
ORF1ab/nsp4325S325delTCA---11B.1.177.180.00116
ORF1ab/nsp4325S325delTCA---11B.1.177.190.001431
ORF1ab/nsp4325S325delTCA---11B.1.177.20.004545
ORF1ab/nsp4325S325StcAtcG11B.1.177.460.000918
ORF1ab/nsp4325S325delTCA---11B.1.177.540.000606
ORF1ab/nsp4325S325delTCA---11B.1.177.580.001332
ORF1ab/nsp4325S325delTCA---11B.1.177.690.001484
ORF1ab/nsp4325S325del1tcAtc-11B.1.177.760.002494
ORF1ab/nsp4325S325LtCatTa11B.1.20.000009
ORF1ab/nsp4325S325PTcaCca11B.1.20.000009
ORF1ab/nsp4325S325StcAtcT11B.1.2210.000071
ORF1ab/nsp4325S325delTCA---11B.1.2580.000067
ORF1ab/nsp4325S325delTCA---11B.1.258.100.011364
ORF1ab/nsp4325S325LtCatTa11B.1.30.002618
ORF1ab/nsp4325S325StcAtcG11B.1.3110.000275
ORF1ab/nsp4325S325CtCAtGT11B.1.3110.000275
ORF1ab/nsp4325S325LtCatTa11B.1.3200.001245
ORF1ab/nsp4325S325LtCatTa11B.1.3360.002439
ORF1ab/nsp4325S325StcAtcG11B.1.3510.00003
ORF1ab/nsp4325S325delTCA---11B.1.36.180.00042
ORF1ab/nsp4325S325StcAtcG11B.1.3690.000285
ORF1ab/nsp4325S325delTCA---11B.1.3890.001002
ORF1ab/nsp4325S325delTCA---11B.1.4150.014286
ORF1ab/nsp4325S325StcAtcG11B.1.4270.00005
ORF1ab/nsp4325S325StcAtcG11B.1.4290.000024
ORF1ab/nsp4325S325StcAtcG11B.1.4520.013699
ORF1ab/nsp4325S325XtCatAa11B.1.4590.004082
ORF1ab/nsp4325S325delTCA---11B.1.5250.000113
ORF1ab/nsp4325S325StcAtcG11B.1.5260.000024
ORF1ab/nsp4325S325StcAtcG11B.1.5770.000687
ORF1ab/nsp4325S325XtCatAa11B.1.5950.000261
ORF1ab/nsp4325S325FtCAtTT11B.1.617.10.000129
ORF1ab/nsp4325S325ATcaGca11B.1.617.20.000004
ORF1ab/nsp4325S325PTcaCca11B.1.617.20.000004
ORF1ab/nsp4325S325LtCatTa11B.1.617.20.000004
ORF1ab/nsp4325S325delTCA---11B.1.6210.000089
ORF1ab/nsp4325S325delTCA---11B.150.017544
ORF1ab/nsp4325S325PTcaCca11B.570.015152
ORF1ab/nsp4325S325XtCatAa11B.60.00091
ORF1ab/nsp4325S325XtCatAa11B.6.60.000889
ORF1ab/nsp4325S325delTCA---11C.170.055556
ORF1ab/nsp4325S325delTCA---11C.360.000911
ORF1ab/nsp4325S325StcAtcG11C.370.000116
ORF1ab/nsp4325S325delTCA---11P.1.100.000269
ORF1ab/nsp4325S325StcAtcG11P.1.150.000232
ORF1ab/nsp4325S325StcAtcG11P.1.160.000374
ORF1ab/nsp4325S325delTCA---11Q.10.000126
ORF1ab/nsp4325S325delTCA---11Q.20.000613
ORF1ab/nsp4325S325StcAtcG11Q.40.000455
ORF1ab/nsp4325S325StcAtcG11R.10.00009
ORF1ab/nsp4325S325delTCA---11U.30.003861
ORF1ab/nsp4325S325StcAtcG11W.10.008696
ORF1ab/nsp4325S325StcAtcG11W.30.005263

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.