CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 325

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4325S325SS3088SsyntcAtcG572756800.9917939527-9529
ORF1ab/nsp4325S325SS3088SsyntcAtcT5727380.006635249527-9529
ORF1ab/nsp4325S325SS3088SsyntcAtcC572790.00157159527-9529
ORF1ab/nsp4325S325delS3088deldelTCA---24924919527-9529
ORF1ab/nsp4325S325LS3088LnonsyntCatTa151519527-9529
ORF1ab/nsp4325S325XS3088XnonsyntCatAa111119527-9529
ORF1ab/nsp4325S325del1S3088del1delTca-ca960.6666679527-9529
ORF1ab/nsp4325S325del1S3088del1deltcAtc-920.2222229527-9529
ORF1ab/nsp4325S325del1S3088del1deltCat-a910.1111119527-9529
ORF1ab/nsp4325S325PS3088PnonsynTcaCca8819527-9529
ORF1ab/nsp4325S325del2S3088del2delTCa--a3319527-9529
ORF1ab/nsp4325S325TS3088TnonsynTcaAca3319527-9529
ORF1ab/nsp4325S325FS3088FnonsyntCAtTT2219527-9529
ORF1ab/nsp4325S325CS3088CnonsyntCAtGT1119527-9529
ORF1ab/nsp4325S325AS3088AnonsynTcaGca1119527-9529

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4325S325StcAtcG56805727All0.001086
ORF1ab/nsp4325S325StcAtcT385727All0.000007
ORF1ab/nsp4325S325StcAtcC95727All0.000002
ORF1ab/nsp4325S325StcAtcG50515051Q.30.73256
ORF1ab/nsp4325S325delTCA---249249All0.000048
ORF1ab/nsp4325S325StcAtcG127129B.1.1770.001672
ORF1ab/nsp4325S325StcAtcT2129B.1.1770.000026
ORF1ab/nsp4325S325delTCA---119119B.1.1.70.000107
ORF1ab/nsp4325S325StcAtcG9496B.1.617.20.000354
ORF1ab/nsp4325S325StcAtcT296B.1.617.20.000008
ORF1ab/nsp4325S325StcAtcG8287B.1.1.70.000073
ORF1ab/nsp4325S325StcAtcT587B.1.1.70.000004
ORF1ab/nsp4325S325StcAtcG4545AY.200.001749
ORF1ab/nsp4325S325StcAtcG4343AY.98.10.002083
ORF1ab/nsp4325S325StcAtcG3336AY.40.000051
ORF1ab/nsp4325S325StcAtcT336AY.40.000005
ORF1ab/nsp4325S325StcAtcG3434B.1.6190.029617
ORF1ab/nsp4325S325StcAtcG2124AY.250.000126
ORF1ab/nsp4325S325StcAtcC224AY.250.000012
ORF1ab/nsp4325S325StcAtcT124AY.250.000006
ORF1ab/nsp4325S325delTCA---1919AY.40.00003
ORF1ab/nsp4325S325StcAtcT1018AY.290.000158
ORF1ab/nsp4325S325StcAtcG818AY.290.000126
ORF1ab/nsp4325S325delTCA---1818B.1.1770.000237
ORF1ab/nsp4325S325StcAtcG1116B.1.20.000097
ORF1ab/nsp4325S325StcAtcC416B.1.20.000035
ORF1ab/nsp4325S325StcAtcT116B.1.20.000009
ORF1ab/nsp4325S325LtCatTa1515All0.000003
ORF1ab/nsp4325S325StcAtcG1114AY.1020.000292
ORF1ab/nsp4325S325StcAtcT314AY.1020.00008
ORF1ab/nsp4325S325StcAtcG1212AY.430.000053
ORF1ab/nsp4325S325StcAtcG912B.10.000082
ORF1ab/nsp4325S325StcAtcT212B.10.000018
ORF1ab/nsp4325S325StcAtcC112B.10.000009
ORF1ab/nsp4325S325XtCatAa1111All0.000002
ORF1ab/nsp4325S325del1Tca-ca69All0.000001
ORF1ab/nsp4325S325del1tcAtc-29All0
ORF1ab/nsp4325S325del1tCat-a19All0
ORF1ab/nsp4325S325StcAtcG89AY.1030.00005
ORF1ab/nsp4325S325StcAtcC19AY.1030.000006
ORF1ab/nsp4325S325StcAtcG69AY.260.00017
ORF1ab/nsp4325S325StcAtcT39AY.260.000085
ORF1ab/nsp4325S325delTCA---99AY.4.50.000967
ORF1ab/nsp4325S325PTcaCca88All0.000002
ORF1ab/nsp4325S325StcAtcG78B.1.10.000127
ORF1ab/nsp4325S325StcAtcT18B.1.10.000018
ORF1ab/nsp4325S325StcAtcG66P.10.000095
ORF1ab/nsp4325S325delTCA---55AY.430.000022
ORF1ab/nsp4325S325StcAtcG55AY.440.00003
ORF1ab/nsp4325S325delTCA---55B.1.617.20.000019
ORF1ab/nsp4325S325delTCA---44AY.250.000024
ORF1ab/nsp4325S325XtCatAa44B.10.000037
ORF1ab/nsp4325S325delTCA---44B.1.177.40.000844
ORF1ab/nsp4325S325delTCA---44B.1.20.000035
ORF1ab/nsp4325S325TTcaAca33All0.000001
ORF1ab/nsp4325S325del2TCa--a33All0.000001
ORF1ab/nsp4325S325StcAtcG33AY.30.00003
ORF1ab/nsp4325S325StcAtcG33AY.90.000203
ORF1ab/nsp4325S325StcAtcG33AY.980.000237
ORF1ab/nsp4325S325del1Tca-ca33B.1.1.70.000003
ORF1ab/nsp4325S325StcAtcG23B.1.1600.000062
ORF1ab/nsp4325S325StcAtcC13B.1.1600.000031
ORF1ab/nsp4325S325del1Tca-ca23B.1.1770.000026
ORF1ab/nsp4325S325del1tcAtc-13B.1.1770.000013
ORF1ab/nsp4325S325delTCA---33B.1.177.870.002183
ORF1ab/nsp4325S325StcAtcG33B.1.5760.00272
ORF1ab/nsp4325S325StcAtcG23D.20.00015
ORF1ab/nsp4325S325StcAtcT13D.20.000075
ORF1ab/nsp4325S325StcAtcG33Q.80.000495
ORF1ab/nsp4325S325FtCAtTT22All0
ORF1ab/nsp4325S325StcAtcG22AY.1080.002205
ORF1ab/nsp4325S325delTCA---22AY.1110.000366
ORF1ab/nsp4325S325delTCA---22AY.1200.000074
ORF1ab/nsp4325S325delTCA---22AY.260.000057
ORF1ab/nsp4325S325delTCA---22AY.4.20.000043
ORF1ab/nsp4325S325StcAtcG22AY.460.000208
ORF1ab/nsp4325S325StcAtcT12AY.50.000021
ORF1ab/nsp4325S325StcAtcG12AY.50.000021
ORF1ab/nsp4325S325StcAtcG22AY.540.000191
ORF1ab/nsp4325S325StcAtcG22AY.75.10.000361
ORF1ab/nsp4325S325delTCA---22AY.90.000135
ORF1ab/nsp4325S325delTCA---22B.1.1.3110.000716
ORF1ab/nsp4325S325delTCA---22B.1.1.3120.003824
ORF1ab/nsp4325S325LtCatTa22B.1.1.70.000002
ORF1ab/nsp4325S325del2TCa--a22B.1.1.70.000002
ORF1ab/nsp4325S325delTCA---22B.1.177.160.001329
ORF1ab/nsp4325S325StcAtcG22B.1.2060.001631
ORF1ab/nsp4325S325StcAtcG22C.10.004785
ORF1ab/nsp4325S325delTCA---11A0.000387
ORF1ab/nsp4325S325delTCA---11AD.20.000219
ORF1ab/nsp4325S325ATcaGca11All0
ORF1ab/nsp4325S325CtCAtGT11All0
ORF1ab/nsp4325S325StcAtcG11AY.1000.000046
ORF1ab/nsp4325S325StcAtcG11AY.1060.000335
ORF1ab/nsp4325S325StcAtcG11AY.1190.000035
ORF1ab/nsp4325S325StcAtcG11AY.120.000316
ORF1ab/nsp4325S325StcAtcT11AY.140.000088
ORF1ab/nsp4325S325delTCA---11AY.190.00114
ORF1ab/nsp4325S325StcAtcG11AY.230.00007
ORF1ab/nsp4325S325FtCAtTT11AY.240.000431
ORF1ab/nsp4325S325LtCatTa11AY.250.000006
ORF1ab/nsp4325S325del1tCat-a11AY.250.000006
ORF1ab/nsp4325S325TTcaAca11AY.250.000006
ORF1ab/nsp4325S325PTcaCca11AY.260.000028
ORF1ab/nsp4325S325PTcaCca11AY.40.000002
ORF1ab/nsp4325S325LtCatTa11AY.40.000002
ORF1ab/nsp4325S325StcAtcG11AY.4.20.000022
ORF1ab/nsp4325S325delTCA---11AY.420.00004
ORF1ab/nsp4325S325StcAtcG11AY.420.00004
ORF1ab/nsp4325S325TTcaAca11AY.430.000004
ORF1ab/nsp4325S325delTCA---11AY.440.000006
ORF1ab/nsp4325S325PTcaCca11AY.440.000006
ORF1ab/nsp4325S325StcAtcG11AY.450.000122
ORF1ab/nsp4325S325delTCA---11AY.46.20.000635
ORF1ab/nsp4325S325StcAtcG11AY.470.000031
ORF1ab/nsp4325S325delTCA---11AY.5.30.000337
ORF1ab/nsp4325S325XtCatAa11AY.520.000814
ORF1ab/nsp4325S325delTCA---11AY.60.000041
ORF1ab/nsp4325S325StcAtcT11AY.60.000041
ORF1ab/nsp4325S325del1Tca-ca11AY.60.000041
ORF1ab/nsp4325S325delTCA---11AY.600.000938
ORF1ab/nsp4325S325StcAtcG11AY.610.000105
ORF1ab/nsp4325S325StcAtcG11AY.690.000187
ORF1ab/nsp4325S325LtCatTa11AY.750.000056
ORF1ab/nsp4325S325delTCA---11AY.780.001541
ORF1ab/nsp4325S325delTCA---11AY.990.001049
ORF1ab/nsp4325S325delTCA---11AY.99.10.001553
ORF1ab/nsp4325S325StcAtcG11AY.99.20.000092
ORF1ab/nsp4325S325StcAtcG11B0.000128
ORF1ab/nsp4325S325LtCatTa11B.10.000009
ORF1ab/nsp4325S325delTCA---11B.10.000009
ORF1ab/nsp4325S325XtCatAa11B.1.10.000018
ORF1ab/nsp4325S325delTCA---11B.1.10.000018
ORF1ab/nsp4325S325LtCatTa11B.1.10.000018
ORF1ab/nsp4325S325StcAtcG11B.1.1.10.000327
ORF1ab/nsp4325S325delTCA---11B.1.1.1390.022727
ORF1ab/nsp4325S325LtCatTa11B.1.1.1610.003534
ORF1ab/nsp4325S325LtCatTa11B.1.1.2940.001266
ORF1ab/nsp4325S325StcAtcG11B.1.1.3060.000438
ORF1ab/nsp4325S325delTCA---11B.1.1.3610.045455
ORF1ab/nsp4325S325PTcaCca11B.1.1.390.00051
ORF1ab/nsp4325S325delTCA---11B.1.1.4200.001006
ORF1ab/nsp4325S325PTcaCca11B.1.1.5190.00004
ORF1ab/nsp4325S325StcAtcG11B.1.1.5190.00004
ORF1ab/nsp4325S325StcAtcG11B.1.1.5240.020833
ORF1ab/nsp4325S325XtCatAa11B.1.1.70.000001
ORF1ab/nsp4325S325delTCA---11B.1.1.700.000341
ORF1ab/nsp4325S325StcAtcG11B.1.1260.001276
ORF1ab/nsp4325S325StcAtcG11B.1.1460.004237
ORF1ab/nsp4325S325delTCA---11B.1.1600.000031
ORF1ab/nsp4325S325LtCatTa11B.1.1600.000031
ORF1ab/nsp4325S325delTCA---11B.1.160.230.004831
ORF1ab/nsp4325S325delTCA---11B.1.160.70.002079
ORF1ab/nsp4325S325del2TCa--a11B.1.1770.000013
ORF1ab/nsp4325S325TTcaAca11B.1.1770.000013
ORF1ab/nsp4325S325delTCA---11B.1.177.110.001698
ORF1ab/nsp4325S325delTCA---11B.1.177.150.000631
ORF1ab/nsp4325S325delTCA---11B.1.177.180.00116
ORF1ab/nsp4325S325delTCA---11B.1.177.190.001431
ORF1ab/nsp4325S325delTCA---11B.1.177.20.004545
ORF1ab/nsp4325S325StcAtcG11B.1.177.460.000918
ORF1ab/nsp4325S325delTCA---11B.1.177.540.000606
ORF1ab/nsp4325S325delTCA---11B.1.177.580.001332
ORF1ab/nsp4325S325delTCA---11B.1.177.690.001484
ORF1ab/nsp4325S325del1tcAtc-11B.1.177.760.002494
ORF1ab/nsp4325S325LtCatTa11B.1.20.000009
ORF1ab/nsp4325S325PTcaCca11B.1.20.000009
ORF1ab/nsp4325S325StcAtcT11B.1.2210.000071
ORF1ab/nsp4325S325delTCA---11B.1.2580.000067
ORF1ab/nsp4325S325delTCA---11B.1.258.100.011364
ORF1ab/nsp4325S325LtCatTa11B.1.30.002618
ORF1ab/nsp4325S325StcAtcG11B.1.3110.000275
ORF1ab/nsp4325S325CtCAtGT11B.1.3110.000275
ORF1ab/nsp4325S325LtCatTa11B.1.3200.001245
ORF1ab/nsp4325S325LtCatTa11B.1.3360.002439
ORF1ab/nsp4325S325StcAtcG11B.1.3510.00003
ORF1ab/nsp4325S325delTCA---11B.1.36.180.00042
ORF1ab/nsp4325S325StcAtcG11B.1.3690.000285
ORF1ab/nsp4325S325delTCA---11B.1.3890.001002
ORF1ab/nsp4325S325delTCA---11B.1.4150.014286
ORF1ab/nsp4325S325StcAtcG11B.1.4270.00005
ORF1ab/nsp4325S325StcAtcG11B.1.4290.000024
ORF1ab/nsp4325S325StcAtcG11B.1.4520.013699
ORF1ab/nsp4325S325XtCatAa11B.1.4590.004082
ORF1ab/nsp4325S325delTCA---11B.1.5250.000113
ORF1ab/nsp4325S325StcAtcG11B.1.5260.000024
ORF1ab/nsp4325S325StcAtcG11B.1.5770.000687
ORF1ab/nsp4325S325XtCatAa11B.1.5950.000261
ORF1ab/nsp4325S325FtCAtTT11B.1.617.10.000129
ORF1ab/nsp4325S325ATcaGca11B.1.617.20.000004
ORF1ab/nsp4325S325PTcaCca11B.1.617.20.000004
ORF1ab/nsp4325S325LtCatTa11B.1.617.20.000004
ORF1ab/nsp4325S325delTCA---11B.1.6210.000089
ORF1ab/nsp4325S325delTCA---11B.150.017544
ORF1ab/nsp4325S325PTcaCca11B.570.015152
ORF1ab/nsp4325S325XtCatAa11B.60.00091
ORF1ab/nsp4325S325XtCatAa11B.6.60.000889
ORF1ab/nsp4325S325delTCA---11C.170.055556
ORF1ab/nsp4325S325delTCA---11C.360.000911
ORF1ab/nsp4325S325StcAtcG11C.370.000116
ORF1ab/nsp4325S325delTCA---11P.1.100.000269
ORF1ab/nsp4325S325StcAtcG11P.1.150.000232
ORF1ab/nsp4325S325StcAtcG11P.1.160.000374
ORF1ab/nsp4325S325delTCA---11Q.10.000126
ORF1ab/nsp4325S325delTCA---11Q.20.000613
ORF1ab/nsp4325S325StcAtcG11Q.40.000455
ORF1ab/nsp4325S325StcAtcG11R.10.00009
ORF1ab/nsp4325S325delTCA---11U.30.003861
ORF1ab/nsp4325S325StcAtcG11W.10.008696
ORF1ab/nsp4325S325StcAtcG11W.30.005263