CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 325 | S325S | S3088S | syn | tcA | tcG | 5727 | 5680 | 0.991793 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325S | S3088S | syn | tcA | tcT | 5727 | 38 | 0.00663524 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325S | S3088S | syn | tcA | tcC | 5727 | 9 | 0.0015715 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325del | S3088del | del | TCA | --- | 249 | 249 | 1 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325L | S3088L | nonsyn | tCa | tTa | 15 | 15 | 1 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325X | S3088X | nonsyn | tCa | tAa | 11 | 11 | 1 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325del1 | S3088del1 | del | Tca | -ca | 9 | 6 | 0.666667 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325del1 | S3088del1 | del | tcA | tc- | 9 | 2 | 0.222222 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325del1 | S3088del1 | del | tCa | t-a | 9 | 1 | 0.111111 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325P | S3088P | nonsyn | Tca | Cca | 8 | 8 | 1 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325del2 | S3088del2 | del | TCa | --a | 3 | 3 | 1 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325T | S3088T | nonsyn | Tca | Aca | 3 | 3 | 1 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325F | S3088F | nonsyn | tCA | tTT | 2 | 2 | 1 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325C | S3088C | nonsyn | tCA | tGT | 1 | 1 | 1 | 9527-9529 |
ORF1ab/nsp4 | 325 | S325A | S3088A | nonsyn | Tca | Gca | 1 | 1 | 1 | 9527-9529 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 5680 | 5727 | All | 0.001086 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 38 | 5727 | All | 0.000007 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcC | 9 | 5727 | All | 0.000002 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 5051 | 5051 | Q.3 | 0.73256 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 249 | 249 | All | 0.000048 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 127 | 129 | B.1.177 | 0.001672 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 2 | 129 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 119 | 119 | B.1.1.7 | 0.000107 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 94 | 96 | B.1.617.2 | 0.000354 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 2 | 96 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 82 | 87 | B.1.1.7 | 0.000073 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 5 | 87 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 45 | 45 | AY.20 | 0.001749 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 43 | 43 | AY.98.1 | 0.002083 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 33 | 36 | AY.4 | 0.000051 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 3 | 36 | AY.4 | 0.000005 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 34 | 34 | B.1.619 | 0.029617 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 21 | 24 | AY.25 | 0.000126 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcC | 2 | 24 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 1 | 24 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 19 | 19 | AY.4 | 0.00003 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 10 | 18 | AY.29 | 0.000158 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 8 | 18 | AY.29 | 0.000126 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 18 | 18 | B.1.177 | 0.000237 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 11 | 16 | B.1.2 | 0.000097 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcC | 4 | 16 | B.1.2 | 0.000035 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 1 | 16 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 15 | 15 | All | 0.000003 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 11 | 14 | AY.102 | 0.000292 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 3 | 14 | AY.102 | 0.00008 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 9 | 12 | B.1 | 0.000082 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 2 | 12 | B.1 | 0.000018 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcC | 1 | 12 | B.1 | 0.000009 |
ORF1ab/nsp4 | 325 | S325X | tCa | tAa | 11 | 11 | All | 0.000002 |
ORF1ab/nsp4 | 325 | S325del1 | Tca | -ca | 6 | 9 | All | 0.000001 |
ORF1ab/nsp4 | 325 | S325del1 | tcA | tc- | 2 | 9 | All | 0 |
ORF1ab/nsp4 | 325 | S325del1 | tCa | t-a | 1 | 9 | All | 0 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 8 | 9 | AY.103 | 0.00005 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcC | 1 | 9 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 6 | 9 | AY.26 | 0.00017 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 3 | 9 | AY.26 | 0.000085 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 9 | 9 | AY.4.5 | 0.000967 |
ORF1ab/nsp4 | 325 | S325P | Tca | Cca | 8 | 8 | All | 0.000002 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 7 | 8 | B.1.1 | 0.000127 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 1 | 8 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp4 | 325 | S325X | tCa | tAa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp4 | 325 | S325T | Tca | Aca | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 325 | S325del2 | TCa | --a | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp4 | 325 | S325del1 | Tca | -ca | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 2 | 3 | B.1.160 | 0.000062 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcC | 1 | 3 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 325 | S325del1 | Tca | -ca | 2 | 3 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 325 | S325del1 | tcA | tc- | 1 | 3 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 2 | 3 | D.2 | 0.00015 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 1 | 3 | D.2 | 0.000075 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp4 | 325 | S325F | tCA | tTT | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 325 | S325del2 | TCa | --a | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 325 | S325A | Tca | Gca | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 325 | S325C | tCA | tGT | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 325 | S325F | tCA | tTT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 325 | S325del1 | tCa | t-a | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 325 | S325T | Tca | Aca | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 325 | S325P | Tca | Cca | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 325 | S325P | Tca | Cca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 325 | S325T | Tca | Aca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 325 | S325P | Tca | Cca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 325 | S325X | tCa | tAa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 325 | S325del1 | Tca | -ca | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 325 | S325X | tCa | tAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp4 | 325 | S325P | Tca | Cca | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp4 | 325 | S325P | Tca | Cca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp4 | 325 | S325X | tCa | tAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp4 | 325 | S325del2 | TCa | --a | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 325 | S325T | Tca | Aca | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 325 | S325del1 | tcA | tc- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 325 | S325P | Tca | Cca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp4 | 325 | S325C | tCA | tGT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.452 | 0.013699 |
ORF1ab/nsp4 | 325 | S325X | tCa | tAa | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp4 | 325 | S325X | tCa | tAa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 325 | S325F | tCA | tTT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 325 | S325A | Tca | Gca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 325 | S325P | Tca | Cca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 325 | S325L | tCa | tTa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 325 | S325P | Tca | Cca | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp4 | 325 | S325X | tCa | tAa | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 325 | S325X | tCa | tAa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp4 | 325 | S325del | TCA | --- | 1 | 1 | U.3 | 0.003861 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | W.1 | 0.008696 |
ORF1ab/nsp4 | 325 | S325S | tcA | tcG | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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