CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 323 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4323L323FL3086FnonsynCttTtt8250825019521-9523

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4323L323FCttTtt82508250All0.001578
ORF1ab/nsp4323L323FCttTtt49204920AY.40.007658
ORF1ab/nsp4323L323FCttTtt798798B.1.1.70.000714
ORF1ab/nsp4323L323FCttTtt762762B.1.617.20.002869
ORF1ab/nsp4323L323FCttTtt334334AY.1020.008856
ORF1ab/nsp4323L323FCttTtt253253B.1.20.002228
ORF1ab/nsp4323L323FCttTtt210210AY.430.00093
ORF1ab/nsp4323L323FCttTtt6767AY.98.10.003245
ORF1ab/nsp4323L323FCttTtt6666B.1.1.3290.253846
ORF1ab/nsp4323L323FCttTtt6262AY.390.001532
ORF1ab/nsp4323L323FCttTtt5757AY.1110.01044
ORF1ab/nsp4323L323FCttTtt5454AY.250.000325
ORF1ab/nsp4323L323FCttTtt5252B.10.000476
ORF1ab/nsp4323L323FCttTtt4747AY.1030.000292
ORF1ab/nsp4323L323FCttTtt2828B.1.4290.000659
ORF1ab/nsp4323L323FCttTtt2525B.1.177.210.001912
ORF1ab/nsp4323L323FCttTtt2323B.1.1770.000303
ORF1ab/nsp4323L323FCttTtt2222AY.440.000134
ORF1ab/nsp4323L323FCttTtt2121B.1.258.170.002183
ORF1ab/nsp4323L323FCttTtt1919AY.460.001978
ORF1ab/nsp4323L323FCttTtt1919B.1.10.000345
ORF1ab/nsp4323L323FCttTtt1818B.1.617.10.002321
ORF1ab/nsp4323L323FCttTtt1717B.1.360.00248
ORF1ab/nsp4323L323FCttTtt1616B.1.5260.000376
ORF1ab/nsp4323L323FCttTtt1616P.10.000252
ORF1ab/nsp4323L323FCttTtt1414AY.470.000435
ORF1ab/nsp4323L323FCttTtt1313AY.1130.001851
ORF1ab/nsp4323L323FCttTtt1313AY.890.063725
ORF1ab/nsp4323L323FCttTtt1212AY.4.50.00129
ORF1ab/nsp4323L323FCttTtt1212AY.420.000483
ORF1ab/nsp4323L323FCttTtt1212AY.450.00146
ORF1ab/nsp4323L323FCttTtt1010AE.80.00489
ORF1ab/nsp4323L323FCttTtt88AY.200.000311
ORF1ab/nsp4323L323FCttTtt88AY.5.30.002699
ORF1ab/nsp4323L323FCttTtt88B.1.5960.000697
ORF1ab/nsp4323L323FCttTtt77AY.1050.004502
ORF1ab/nsp4323L323FCttTtt77B.1.1.2140.000388
ORF1ab/nsp4323L323FCttTtt77B.1.1.280.002179
ORF1ab/nsp4323L323FCttTtt77B.1.1.330.002946
ORF1ab/nsp4323L323FCttTtt66AY.46.60.000433
ORF1ab/nsp4323L323FCttTtt55AY.1180.000313
ORF1ab/nsp4323L323FCttTtt55AY.230.000349
ORF1ab/nsp4323L323FCttTtt55AY.5.40.001384
ORF1ab/nsp4323L323FCttTtt55AY.7.10.000564
ORF1ab/nsp4323L323FCttTtt55AY.980.000395
ORF1ab/nsp4323L323FCttTtt55B.1.3690.001426
ORF1ab/nsp4323L323FCttTtt44AY.1200.000149
ORF1ab/nsp4323L323FCttTtt44AY.1210.000541
ORF1ab/nsp4323L323FCttTtt44AY.160.001519
ORF1ab/nsp4323L323FCttTtt44AY.260.000113
ORF1ab/nsp4323L323FCttTtt44AY.30.00004
ORF1ab/nsp4323L323FCttTtt44AY.39.10.000158
ORF1ab/nsp4323L323FCttTtt44AY.46.20.002541
ORF1ab/nsp4323L323FCttTtt44B.1.2210.000284
ORF1ab/nsp4323L323FCttTtt44B.1.2580.000266
ORF1ab/nsp4323L323FCttTtt33AY.1170.000254
ORF1ab/nsp4323L323FCttTtt33AY.320.001597
ORF1ab/nsp4323L323FCttTtt33AY.4.20.000065
ORF1ab/nsp4323L323FCttTtt33AY.4.40.001227
ORF1ab/nsp4323L323FCttTtt33AY.480.001395
ORF1ab/nsp4323L323FCttTtt33AY.75.10.000541
ORF1ab/nsp4323L323FCttTtt33B.1.1.4870.01676
ORF1ab/nsp4323L323FCttTtt33B.1.3960.002117
ORF1ab/nsp4323L323FCttTtt33B.1.5640.001278
ORF1ab/nsp4323L323FCttTtt33P.20.00056
ORF1ab/nsp4323L323FCttTtt33R.10.00027
ORF1ab/nsp4323L323FCttTtt22AY.1000.000092
ORF1ab/nsp4323L323FCttTtt22AY.1190.000071
ORF1ab/nsp4323L323FCttTtt22AY.290.000032
ORF1ab/nsp4323L323FCttTtt22AY.60.000082
ORF1ab/nsp4323L323FCttTtt22AY.70.000392
ORF1ab/nsp4323L323FCttTtt22AY.750.000112
ORF1ab/nsp4323L323FCttTtt22AY.9.20.000073
ORF1ab/nsp4323L323FCttTtt22B.1.1.3170.000823
ORF1ab/nsp4323L323FCttTtt22B.1.1.3330.002153
ORF1ab/nsp4323L323FCttTtt22B.1.1600.000062
ORF1ab/nsp4323L323FCttTtt22B.1.2430.000139
ORF1ab/nsp4323L323FCttTtt22B.1.3510.000059
ORF1ab/nsp4323L323FCttTtt22B.1.36.180.00084
ORF1ab/nsp4323L323FCttTtt22B.1.3750.001639
ORF1ab/nsp4323L323FCttTtt22B.570.030303
ORF1ab/nsp4323L323FCttTtt22C.370.000232
ORF1ab/nsp4323L323FCttTtt22D.20.00015
ORF1ab/nsp4323L323FCttTtt22P.1.130.001797
ORF1ab/nsp4323L323FCttTtt11A.20.000662
ORF1ab/nsp4323L323FCttTtt11A.23.10.000704
ORF1ab/nsp4323L323FCttTtt11A.30.002096
ORF1ab/nsp4323L323FCttTtt11AY.10.000396
ORF1ab/nsp4323L323FCttTtt11AY.1060.000335
ORF1ab/nsp4323L323FCttTtt11AY.1090.00074
ORF1ab/nsp4323L323FCttTtt11AY.1100.000113
ORF1ab/nsp4323L323FCttTtt11AY.1160.000287
ORF1ab/nsp4323L323FCttTtt11AY.130.000161
ORF1ab/nsp4323L323FCttTtt11AY.140.000088
ORF1ab/nsp4323L323FCttTtt11AY.16.10.00047
ORF1ab/nsp4323L323FCttTtt11AY.210.001898
ORF1ab/nsp4323L323FCttTtt11AY.340.000097
ORF1ab/nsp4323L323FCttTtt11AY.34.10.00051
ORF1ab/nsp4323L323FCttTtt11AY.350.000233
ORF1ab/nsp4323L323FCttTtt11AY.4.30.000842
ORF1ab/nsp4323L323FCttTtt11AY.46.10.001027
ORF1ab/nsp4323L323FCttTtt11AY.46.40.000165
ORF1ab/nsp4323L323FCttTtt11AY.50.000021
ORF1ab/nsp4323L323FCttTtt11AY.510.000909
ORF1ab/nsp4323L323FCttTtt11AY.570.000656
ORF1ab/nsp4323L323FCttTtt11AY.670.000464
ORF1ab/nsp4323L323FCttTtt11AY.690.000187
ORF1ab/nsp4323L323FCttTtt11AY.730.000665
ORF1ab/nsp4323L323FCttTtt11AY.800.001129
ORF1ab/nsp4323L323FCttTtt11AY.840.000437
ORF1ab/nsp4323L323FCttTtt11AY.9.10.000084
ORF1ab/nsp4323L323FCttTtt11AY.930.000273
ORF1ab/nsp4323L323FCttTtt11AZ.30.00152
ORF1ab/nsp4323L323FCttTtt11B.1.1.2160.00089
ORF1ab/nsp4323L323FCttTtt11B.1.1.2630.001558
ORF1ab/nsp4323L323FCttTtt11B.1.1.3110.000358
ORF1ab/nsp4323L323FCttTtt11B.1.1.3200.018182
ORF1ab/nsp4323L323FCttTtt11B.1.1.3720.000689
ORF1ab/nsp4323L323FCttTtt11B.1.1.390.00051
ORF1ab/nsp4323L323FCttTtt11B.1.1.4230.0625
ORF1ab/nsp4323L323FCttTtt11B.1.1.4480.002033
ORF1ab/nsp4323L323FCttTtt11B.1.1.5190.00004
ORF1ab/nsp4323L323FCttTtt11B.1.1.890.006061
ORF1ab/nsp4323L323FCttTtt11B.1.177.260.006993
ORF1ab/nsp4323L323FCttTtt11B.1.177.40.000211
ORF1ab/nsp4323L323FCttTtt11B.1.177.720.00339
ORF1ab/nsp4323L323FCttTtt11B.1.2060.000816
ORF1ab/nsp4323L323FCttTtt11B.1.2180.005155
ORF1ab/nsp4323L323FCttTtt11B.1.220.001318
ORF1ab/nsp4323L323FCttTtt11B.1.2340.000132
ORF1ab/nsp4323L323FCttTtt11B.1.36.10.00114
ORF1ab/nsp4323L323FCttTtt11B.1.36.290.000517
ORF1ab/nsp4323L323FCttTtt11B.1.3800.006623
ORF1ab/nsp4323L323FCttTtt11B.1.438.10.000107
ORF1ab/nsp4323L323FCttTtt11B.1.4590.004082
ORF1ab/nsp4323L323FCttTtt11B.1.4680.005714
ORF1ab/nsp4323L323FCttTtt11B.1.5170.000427
ORF1ab/nsp4323L323FCttTtt11B.1.5240.001406
ORF1ab/nsp4323L323FCttTtt11B.1.5250.000113
ORF1ab/nsp4323L323FCttTtt11B.1.5400.009709
ORF1ab/nsp4323L323FCttTtt11B.1.5770.000687
ORF1ab/nsp4323L323FCttTtt11B.1.5800.004065
ORF1ab/nsp4323L323FCttTtt11B.1.5970.00463
ORF1ab/nsp4323L323FCttTtt11B.1.6280.000352
ORF1ab/nsp4323L323FCttTtt11B.1.6370.000073
ORF1ab/nsp4323L323FCttTtt11C.10.002392
ORF1ab/nsp4323L323FCttTtt11C.350.000774
ORF1ab/nsp4323L323FCttTtt11P.1.140.000048
ORF1ab/nsp4323L323FCttTtt11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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