CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 319 | T319I | T3082I | nonsyn | aCt | aTt | 588 | 587 | 0.998299 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319I | T3082I | nonsyn | aCT | aTA | 588 | 1 | 0.00170068 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319A | T3082A | nonsyn | Act | Gct | 343 | 342 | 0.997085 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319A | T3082A | nonsyn | AcT | GcC | 343 | 1 | 0.00291545 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319del | T3082del | del | ACT | --- | 268 | 268 | 1 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319T | T3082T | syn | acT | acC | 176 | 138 | 0.784091 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319T | T3082T | syn | acT | acG | 176 | 31 | 0.176136 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319T | T3082T | syn | acT | acA | 176 | 7 | 0.0397727 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319N | T3082N | nonsyn | aCt | aAt | 12 | 11 | 0.916667 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319N | T3082N | nonsyn | aCT | aAC | 12 | 1 | 0.0833333 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319S | T3082S | nonsyn | Act | Tct | 5 | 4 | 0.8 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319del1 | T3082del1 | del | acT | ac- | 5 | 4 | 0.8 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319del1 | T3082del1 | del | AcT | Gc- | 5 | 1 | 0.2 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319S | T3082S | nonsyn | aCt | aGt | 5 | 1 | 0.2 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319del2 | T3082del2 | del | ACt | --t | 3 | 3 | 1 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319Y | T3082Y | nonsyn | ACt | TAt | 2 | 2 | 1 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319K | T3082K | nonsyn | aCT | aAA | 1 | 1 | 1 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319P | T3082P | nonsyn | Act | Cct | 1 | 1 | 1 | 9509-9511 |
ORF1ab/nsp4 | 319 | T319D | T3082D | nonsyn | ACt | GAt | 1 | 1 | 1 | 9509-9511 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 587 | 588 | All | 0.000112 |
ORF1ab/nsp4 | 319 | T319I | aCT | aTA | 1 | 588 | All | 0 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 342 | 343 | All | 0.000065 |
ORF1ab/nsp4 | 319 | T319A | AcT | GcC | 1 | 343 | All | 0 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 268 | 268 | All | 0.000051 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 138 | 176 | All | 0.000026 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 31 | 176 | All | 0.000006 |
ORF1ab/nsp4 | 319 | T319T | acT | acA | 7 | 176 | All | 0.000001 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 164 | 164 | B.1.1.7 | 0.000147 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 130 | 130 | B.1.1.7 | 0.000116 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 126 | 126 | P.1.9 | 0.605769 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 56 | 56 | P.1 | 0.000882 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 46 | 46 | AY.4 | 0.000072 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 46 | 46 | B.1.2 | 0.000405 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 43 | 43 | B.1.526 | 0.001011 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 42 | 42 | B.1.1.7 | 0.000038 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 42 | 42 | B.1.243 | 0.002923 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 42 | 42 | P.1.15 | 0.009758 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 23 | 23 | AY.4 | 0.000036 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 17 | 17 | AY.34 | 0.001648 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 17 | 17 | B.1.596 | 0.001481 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 14 | 14 | AY.39.1 | 0.000555 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 13 | 13 | AY.27 | 0.000841 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp4 | 319 | T319N | aCt | aAt | 11 | 12 | All | 0.000002 |
ORF1ab/nsp4 | 319 | T319N | aCT | aAC | 1 | 12 | All | 0 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 12 | 12 | AY.46.2 | 0.007624 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 11 | 11 | AY.39 | 0.000272 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 9 | 11 | AY.4 | 0.000014 |
ORF1ab/nsp4 | 319 | T319T | acT | acA | 1 | 11 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 1 | 11 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 11 | 11 | B.1.596 | 0.000959 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 9 | 9 | AY.43 | 0.00004 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 7 | 7 | AY.75 | 0.000392 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 4 | 7 | B.1.617.2 | 0.000015 |
ORF1ab/nsp4 | 319 | T319T | acT | acA | 3 | 7 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 4 | 6 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 1 | 6 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 319 | T319T | acT | acA | 1 | 6 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp4 | 319 | T319del1 | acT | ac- | 4 | 5 | All | 0.000001 |
ORF1ab/nsp4 | 319 | T319S | Act | Tct | 4 | 5 | All | 0.000001 |
ORF1ab/nsp4 | 319 | T319S | aCt | aGt | 1 | 5 | All | 0 |
ORF1ab/nsp4 | 319 | T319del1 | AcT | Gc- | 1 | 5 | All | 0 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 5 | 5 | AY.24 | 0.002155 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 5 | 5 | P.1.17 | 0.000809 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp4 | 319 | T319T | acT | acA | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 4 | 4 | B.1.1.75 | 0.042553 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp4 | 319 | T319N | aCt | aAt | 3 | 3 | 0.166667 | |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 3 | 3 | A.27 | 0.004967 |
ORF1ab/nsp4 | 319 | T319del2 | ACt | --t | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 3 | 3 | B.1.612 | 0.007958 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp4 | 319 | T319S | Act | Tct | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 319 | T319Y | ACt | TAt | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 319 | T319Y | ACt | TAt | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp4 | 319 | T319del1 | acT | ac- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp4 | 319 | T319del2 | ACt | --t | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 319 | T319S | Act | Tct | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 319 | T319S | aCt | aGt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp4 | 319 | T319N | aCt | aAt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 319 | T319D | ACt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 319 | T319K | aCT | aAA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 319 | T319P | Act | Cct | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 319 | T319N | aCt | aAt | 1 | 1 | AU.1 | 0.001266 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 319 | T319N | aCt | aAt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 319 | T319D | ACt | GAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 319 | T319del1 | acT | ac- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 319 | T319N | aCt | aAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 319 | T319K | aCT | aAA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 319 | T319N | aCT | aAC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.1.158 | 0.012195 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.1.187 | 0.00885 |
ORF1ab/nsp4 | 319 | T319N | aCt | aAt | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 319 | T319N | aCt | aAt | 1 | 1 | B.1.118 | 0.006711 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp4 | 319 | T319del1 | acT | ac- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp4 | 319 | T319N | aCt | aAt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | B.1.205 | 0.02381 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp4 | 319 | T319T | acT | acA | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.264 | 0.012346 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 319 | T319P | Act | Cct | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 319 | T319T | acT | acG | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 319 | T319S | Act | Tct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 319 | T319del1 | AcT | Gc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 319 | T319A | AcT | GcC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp4 | 319 | T319I | aCT | aTA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 319 | T319del2 | ACt | --t | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 319 | T319I | aCt | aTt | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp4 | 319 | T319T | acT | acC | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 319 | T319A | Act | Gct | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp4 | 319 | T319del | ACT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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