CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 319

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4319T319IT3082InonsynaCtaTt5885870.9982999509-9511
ORF1ab/nsp4319T319IT3082InonsynaCTaTA58810.001700689509-9511
ORF1ab/nsp4319T319AT3082AnonsynActGct3433420.9970859509-9511
ORF1ab/nsp4319T319AT3082AnonsynAcTGcC34310.002915459509-9511
ORF1ab/nsp4319T319delT3082deldelACT---26826819509-9511
ORF1ab/nsp4319T319TT3082TsynacTacC1761380.7840919509-9511
ORF1ab/nsp4319T319TT3082TsynacTacG176310.1761369509-9511
ORF1ab/nsp4319T319TT3082TsynacTacA17670.03977279509-9511
ORF1ab/nsp4319T319NT3082NnonsynaCtaAt12110.9166679509-9511
ORF1ab/nsp4319T319NT3082NnonsynaCTaAC1210.08333339509-9511
ORF1ab/nsp4319T319ST3082SnonsynActTct540.89509-9511
ORF1ab/nsp4319T319del1T3082del1delacTac-540.89509-9511
ORF1ab/nsp4319T319del1T3082del1delAcTGc-510.29509-9511
ORF1ab/nsp4319T319ST3082SnonsynaCtaGt510.29509-9511
ORF1ab/nsp4319T319del2T3082del2delACt--t3319509-9511
ORF1ab/nsp4319T319YT3082YnonsynACtTAt2219509-9511
ORF1ab/nsp4319T319KT3082KnonsynaCTaAA1119509-9511
ORF1ab/nsp4319T319PT3082PnonsynActCct1119509-9511
ORF1ab/nsp4319T319DT3082DnonsynACtGAt1119509-9511

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4319T319IaCtaTt587588All0.000112
ORF1ab/nsp4319T319IaCTaTA1588All0
ORF1ab/nsp4319T319AActGct342343All0.000065
ORF1ab/nsp4319T319AAcTGcC1343All0
ORF1ab/nsp4319T319delACT---268268All0.000051
ORF1ab/nsp4319T319TacTacC138176All0.000026
ORF1ab/nsp4319T319TacTacG31176All0.000006
ORF1ab/nsp4319T319TacTacA7176All0.000001
ORF1ab/nsp4319T319IaCtaTt164164B.1.1.70.000147
ORF1ab/nsp4319T319delACT---130130B.1.1.70.000116
ORF1ab/nsp4319T319AActGct126126P.1.90.605769
ORF1ab/nsp4319T319TacTacC5656P.10.000882
ORF1ab/nsp4319T319IaCtaTt4646AY.40.000072
ORF1ab/nsp4319T319IaCtaTt4646B.1.20.000405
ORF1ab/nsp4319T319IaCtaTt4343B.1.5260.001011
ORF1ab/nsp4319T319AActGct4242B.1.1.70.000038
ORF1ab/nsp4319T319AActGct4242B.1.2430.002923
ORF1ab/nsp4319T319AActGct4242P.1.150.009758
ORF1ab/nsp4319T319TacTacC2525B.1.3510.000743
ORF1ab/nsp4319T319AActGct2323AY.40.000036
ORF1ab/nsp4319T319delACT---2323B.1.1770.000303
ORF1ab/nsp4319T319delACT---2020AY.40.000031
ORF1ab/nsp4319T319IaCtaTt1717AY.1030.000106
ORF1ab/nsp4319T319IaCtaTt1717AY.340.001648
ORF1ab/nsp4319T319IaCtaTt1717B.1.5960.001481
ORF1ab/nsp4319T319IaCtaTt1414AY.39.10.000555
ORF1ab/nsp4319T319IaCtaTt1414B.1.617.20.000053
ORF1ab/nsp4319T319IaCtaTt1313AY.250.000078
ORF1ab/nsp4319T319IaCtaTt1313AY.270.000841
ORF1ab/nsp4319T319TacTacC1313B.10.000119
ORF1ab/nsp4319T319NaCtaAt1112All0.000002
ORF1ab/nsp4319T319NaCTaAC112All0
ORF1ab/nsp4319T319AActGct1212AY.46.20.007624
ORF1ab/nsp4319T319IaCtaTt1111AY.390.000272
ORF1ab/nsp4319T319TacTacC911AY.40.000014
ORF1ab/nsp4319T319TacTacA111AY.40.000002
ORF1ab/nsp4319T319TacTacG111AY.40.000002
ORF1ab/nsp4319T319AActGct1111B.1.5960.000959
ORF1ab/nsp4319T319IaCtaTt99AY.430.00004
ORF1ab/nsp4319T319TacTacG99AY.440.000055
ORF1ab/nsp4319T319IaCtaTt99B.10.000082
ORF1ab/nsp4319T319IaCtaTt99B.1.1770.000119
ORF1ab/nsp4319T319IaCtaTt99B.1.4290.000212
ORF1ab/nsp4319T319delACT---88AY.4.50.00086
ORF1ab/nsp4319T319IaCtaTt88B.1.10.000145
ORF1ab/nsp4319T319IaCtaTt77AY.750.000392
ORF1ab/nsp4319T319TacTacC47B.1.617.20.000015
ORF1ab/nsp4319T319TacTacA37B.1.617.20.000011
ORF1ab/nsp4319T319IaCtaTt66B.1.1.5190.000238
ORF1ab/nsp4319T319TacTacC46B.1.1.70.000004
ORF1ab/nsp4319T319TacTacG16B.1.1.70.000001
ORF1ab/nsp4319T319TacTacA16B.1.1.70.000001
ORF1ab/nsp4319T319TacTacC66B.1.1600.000187
ORF1ab/nsp4319T319del1acTac-45All0.000001
ORF1ab/nsp4319T319SActTct45All0.000001
ORF1ab/nsp4319T319SaCtaGt15All0
ORF1ab/nsp4319T319del1AcTGc-15All0
ORF1ab/nsp4319T319AActGct55AY.1180.000313
ORF1ab/nsp4319T319IaCtaTt55AY.240.002155
ORF1ab/nsp4319T319IaCtaTt55AY.290.000079
ORF1ab/nsp4319T319delACT---55AY.430.000022
ORF1ab/nsp4319T319AActGct55AY.430.000022
ORF1ab/nsp4319T319delACT---55B.1.617.20.000019
ORF1ab/nsp4319T319IaCtaTt55P.1.170.000809
ORF1ab/nsp4319T319IaCtaTt44AY.1020.000106
ORF1ab/nsp4319T319delACT---44AY.250.000024
ORF1ab/nsp4319T319TacTacG34AY.430.000013
ORF1ab/nsp4319T319TacTacA14AY.430.000004
ORF1ab/nsp4319T319IaCtaTt44AY.440.000024
ORF1ab/nsp4319T319IaCtaTt44AY.99.20.000369
ORF1ab/nsp4319T319IaCtaTt44B.1.1.750.042553
ORF1ab/nsp4319T319IaCtaTt44B.1.1600.000125
ORF1ab/nsp4319T319delACT---44B.1.20.000035
ORF1ab/nsp4319T319AActGct44B.1.2210.000284
ORF1ab/nsp4319T319TacTacC44B.1.4290.000094
ORF1ab/nsp4319T319IaCtaTt44B.1.5250.000453
ORF1ab/nsp4319T319AActGct44P.10.000063
ORF1ab/nsp4319T319NaCtaAt330.166667
ORF1ab/nsp4319T319IaCtaTt33A.270.004967
ORF1ab/nsp4319T319del2ACt--t33All0.000001
ORF1ab/nsp4319T319IaCtaTt33AY.16.10.00141
ORF1ab/nsp4319T319IaCtaTt33AY.200.000117
ORF1ab/nsp4319T319IaCtaTt33AY.260.000085
ORF1ab/nsp4319T319IaCtaTt33AY.30.00003
ORF1ab/nsp4319T319delACT---33B.1.10.000054
ORF1ab/nsp4319T319delACT---33B.1.177.40.000633
ORF1ab/nsp4319T319delACT---33B.1.177.870.002183
ORF1ab/nsp4319T319TacTacG33B.1.360.000438
ORF1ab/nsp4319T319IaCtaTt33B.1.6120.007958
ORF1ab/nsp4319T319AActGct33B.1.617.20.000011
ORF1ab/nsp4319T319IaCtaTt33P.10.000047
ORF1ab/nsp4319T319SActTct220.111111
ORF1ab/nsp4319T319YACtTAt220.111111
ORF1ab/nsp4319T319YACtTAt22All0
ORF1ab/nsp4319T319TacTacC12AY.1030.000006
ORF1ab/nsp4319T319TacTacG12AY.1030.000006
ORF1ab/nsp4319T319delACT---22AY.1110.000366
ORF1ab/nsp4319T319AActGct22AY.1190.000071
ORF1ab/nsp4319T319delACT---22AY.1200.000074
ORF1ab/nsp4319T319IaCtaTt22AY.120.20.002571
ORF1ab/nsp4319T319delACT---22AY.190.002281
ORF1ab/nsp4319T319TacTacG22AY.260.000057
ORF1ab/nsp4319T319delACT---22AY.260.000057
ORF1ab/nsp4319T319AActGct22AY.30.00002
ORF1ab/nsp4319T319IaCtaTt22AY.4.20.000043
ORF1ab/nsp4319T319AActGct22AY.440.000012
ORF1ab/nsp4319T319delACT---22AY.46.20.001271
ORF1ab/nsp4319T319delACT---22AY.60.000082
ORF1ab/nsp4319T319TacTacC22AY.750.000112
ORF1ab/nsp4319T319AActGct22AY.80.001212
ORF1ab/nsp4319T319IaCtaTt22AY.880.001768
ORF1ab/nsp4319T319delACT---22AY.90.000135
ORF1ab/nsp4319T319IaCtaTt22B0.000256
ORF1ab/nsp4319T319del1acTac-22B.10.000018
ORF1ab/nsp4319T319IaCtaTt22B.1.1.2140.000111
ORF1ab/nsp4319T319delACT---22B.1.1.3110.000716
ORF1ab/nsp4319T319delACT---22B.1.1.3120.003824
ORF1ab/nsp4319T319AActGct22B.1.1.3540.008772
ORF1ab/nsp4319T319del2ACt--t22B.1.1.70.000002
ORF1ab/nsp4319T319SActTct12B.1.1.70.000001
ORF1ab/nsp4319T319SaCtaGt12B.1.1.70.000001
ORF1ab/nsp4319T319TacTacG22B.1.1770.000026
ORF1ab/nsp4319T319delACT---22B.1.177.160.001329
ORF1ab/nsp4319T319delACT---22B.1.177.180.00232
ORF1ab/nsp4319T319IaCtaTt22B.1.2210.000142
ORF1ab/nsp4319T319IaCtaTt22B.1.3510.000059
ORF1ab/nsp4319T319IaCtaTt22B.1.36.310.003503
ORF1ab/nsp4319T319TacTacC22B.1.5260.000047
ORF1ab/nsp4319T319TacTacG22B.1.5640.000852
ORF1ab/nsp4319T319NaCtaAt22B.1.617.20.000008
ORF1ab/nsp4319T319IaCtaTt22D.20.00015
ORF1ab/nsp4319T319delACT---11AD.20.000219
ORF1ab/nsp4319T319DACtGAt11All0
ORF1ab/nsp4319T319KaCTaAA11All0
ORF1ab/nsp4319T319PActCct11All0
ORF1ab/nsp4319T319NaCtaAt11AU.10.001266
ORF1ab/nsp4319T319AActGct11AY.1000.000046
ORF1ab/nsp4319T319IaCtaTt11AY.1110.000183
ORF1ab/nsp4319T319IaCtaTt11AY.1170.000085
ORF1ab/nsp4319T319IaCtaTt11AY.1200.000037
ORF1ab/nsp4319T319AActGct11AY.230.00007
ORF1ab/nsp4319T319NaCtaAt11AY.240.000431
ORF1ab/nsp4319T319DACtGAt11AY.250.000006
ORF1ab/nsp4319T319AActGct11AY.290.000016
ORF1ab/nsp4319T319IaCtaTt11AY.330.000067
ORF1ab/nsp4319T319IaCtaTt11AY.370.000316
ORF1ab/nsp4319T319delACT---11AY.4.20.000022
ORF1ab/nsp4319T319TacTacC11AY.4.20.000022
ORF1ab/nsp4319T319TacTacG11AY.420.00004
ORF1ab/nsp4319T319IaCtaTt11AY.420.00004
ORF1ab/nsp4319T319delACT---11AY.420.00004
ORF1ab/nsp4319T319del1acTac-11AY.440.000006
ORF1ab/nsp4319T319delACT---11AY.440.000006
ORF1ab/nsp4319T319IaCtaTt11AY.460.000104
ORF1ab/nsp4319T319TacTacG11AY.460.000104
ORF1ab/nsp4319T319IaCtaTt11AY.470.000031
ORF1ab/nsp4319T319IaCtaTt11AY.50.000021
ORF1ab/nsp4319T319delACT---11AY.5.30.000337
ORF1ab/nsp4319T319TacTacC11AY.500.000799
ORF1ab/nsp4319T319IaCtaTt11AY.570.000656
ORF1ab/nsp4319T319IaCtaTt11AY.580.000907
ORF1ab/nsp4319T319delACT---11AY.600.000938
ORF1ab/nsp4319T319TacTacG11AY.620.000436
ORF1ab/nsp4319T319IaCtaTt11AY.680.000274
ORF1ab/nsp4319T319delACT---11AY.780.001541
ORF1ab/nsp4319T319TacTacC11AY.940.000443
ORF1ab/nsp4319T319IaCtaTt11AY.980.000079
ORF1ab/nsp4319T319TacTacC11AY.980.000079
ORF1ab/nsp4319T319delACT---11AY.990.001049
ORF1ab/nsp4319T319delACT---11AY.99.10.001553
ORF1ab/nsp4319T319TacTacC11B0.000128
ORF1ab/nsp4319T319delACT---11B.10.000009
ORF1ab/nsp4319T319NaCtaAt11B.10.000009
ORF1ab/nsp4319T319KaCTaAA11B.1.10.000018
ORF1ab/nsp4319T319NaCTaAC11B.1.10.000018
ORF1ab/nsp4319T319TacTacG11B.1.10.000018
ORF1ab/nsp4319T319IaCtaTt11B.1.1.100.001115
ORF1ab/nsp4319T319delACT---11B.1.1.1390.022727
ORF1ab/nsp4319T319IaCtaTt11B.1.1.1580.012195
ORF1ab/nsp4319T319TacTacG11B.1.1.1640.005155
ORF1ab/nsp4319T319TacTacG11B.1.1.1860.003436
ORF1ab/nsp4319T319IaCtaTt11B.1.1.1870.00885
ORF1ab/nsp4319T319NaCtaAt11B.1.1.1940.00495
ORF1ab/nsp4319T319IaCtaTt11B.1.1.2220.000204
ORF1ab/nsp4319T319IaCtaTt11B.1.1.2840.000107
ORF1ab/nsp4319T319IaCtaTt11B.1.1.2970.002237
ORF1ab/nsp4319T319IaCtaTt11B.1.1.3260.001761
ORF1ab/nsp4319T319delACT---11B.1.1.3610.045455
ORF1ab/nsp4319T319delACT---11B.1.1.370.000193
ORF1ab/nsp4319T319AActGct11B.1.1.3970.002252
ORF1ab/nsp4319T319delACT---11B.1.1.4200.001006
ORF1ab/nsp4319T319AActGct11B.1.1.630.000386
ORF1ab/nsp4319T319delACT---11B.1.1.700.000341
ORF1ab/nsp4319T319NaCtaAt11B.1.1180.006711
ORF1ab/nsp4319T319TacTacC11B.1.1570.002985
ORF1ab/nsp4319T319delACT---11B.1.160.230.004831
ORF1ab/nsp4319T319delACT---11B.1.160.70.002079
ORF1ab/nsp4319T319del1acTac-11B.1.1770.000013
ORF1ab/nsp4319T319AActGct11B.1.1770.000013
ORF1ab/nsp4319T319delACT---11B.1.177.110.001698
ORF1ab/nsp4319T319delACT---11B.1.177.150.000631
ORF1ab/nsp4319T319IaCtaTt11B.1.177.190.001431
ORF1ab/nsp4319T319delACT---11B.1.177.190.001431
ORF1ab/nsp4319T319delACT---11B.1.177.20.004545
ORF1ab/nsp4319T319NaCtaAt11B.1.177.40.000211
ORF1ab/nsp4319T319delACT---11B.1.177.540.000606
ORF1ab/nsp4319T319TacTacC11B.1.177.560.000668
ORF1ab/nsp4319T319delACT---11B.1.177.580.001332
ORF1ab/nsp4319T319delACT---11B.1.177.690.001484
ORF1ab/nsp4319T319delACT---11B.1.177.90.001332
ORF1ab/nsp4319T319TacTacC11B.1.20.000009
ORF1ab/nsp4319T319AActGct11B.1.2050.02381
ORF1ab/nsp4319T319IaCtaTt11B.1.2060.000816
ORF1ab/nsp4319T319TacTacA11B.1.2320.000537
ORF1ab/nsp4319T319IaCtaTt11B.1.2340.000132
ORF1ab/nsp4319T319IaCtaTt11B.1.2400.000216
ORF1ab/nsp4319T319TacTacC11B.1.2430.00007
ORF1ab/nsp4319T319delACT---11B.1.2580.000067
ORF1ab/nsp4319T319AActGct11B.1.2580.000067
ORF1ab/nsp4319T319delACT---11B.1.258.100.011364
ORF1ab/nsp4319T319IaCtaTt11B.1.2640.012346
ORF1ab/nsp4319T319AActGct11B.1.3510.00003
ORF1ab/nsp4319T319IaCtaTt11B.1.360.000146
ORF1ab/nsp4319T319PActCct11B.1.36.170.000494
ORF1ab/nsp4319T319delACT---11B.1.36.180.00042
ORF1ab/nsp4319T319TacTacG11B.1.36.290.000517
ORF1ab/nsp4319T319delACT---11B.1.3890.001002
ORF1ab/nsp4319T319IaCtaTt11B.1.3970.004854
ORF1ab/nsp4319T319delACT---11B.1.4150.014286
ORF1ab/nsp4319T319AActGct11B.1.4160.001269
ORF1ab/nsp4319T319IaCtaTt11B.1.4270.00005
ORF1ab/nsp4319T319AActGct11B.1.4290.000024
ORF1ab/nsp4319T319SActTct11B.1.4290.000024
ORF1ab/nsp4319T319IaCtaTt11B.1.4590.004082
ORF1ab/nsp4319T319IaCtaTt11B.1.4620.007246
ORF1ab/nsp4319T319IaCtaTt11B.1.466.20.000391
ORF1ab/nsp4319T319IaCtaTt11B.1.4700.001404
ORF1ab/nsp4319T319delACT---11B.1.5250.000113
ORF1ab/nsp4319T319IaCtaTt11B.1.5610.000397
ORF1ab/nsp4319T319TacTacC11B.1.5820.000491
ORF1ab/nsp4319T319IaCtaTt11B.1.617.10.000129
ORF1ab/nsp4319T319del1AcTGc-11B.1.617.20.000004
ORF1ab/nsp4319T319AAcTGcC11B.1.6210.000089
ORF1ab/nsp4319T319IaCtaTt11B.1.6210.000089
ORF1ab/nsp4319T319AActGct11B.1.840.020833
ORF1ab/nsp4319T319delACT---11B.150.017544
ORF1ab/nsp4319T319delACT---11C.170.055556
ORF1ab/nsp4319T319IaCtaTt11C.260.007353
ORF1ab/nsp4319T319IaCTaTA11C.350.000774
ORF1ab/nsp4319T319delACT---11C.360.000911
ORF1ab/nsp4319T319TacTacC11C.370.000116
ORF1ab/nsp4319T319del2ACt--t11D.20.000075
ORF1ab/nsp4319T319IaCtaTt11D.30.005917
ORF1ab/nsp4319T319TacTacC11P.1.10.000318
ORF1ab/nsp4319T319delACT---11P.1.100.000269
ORF1ab/nsp4319T319AActGct11P.1.160.000374
ORF1ab/nsp4319T319delACT---11Q.10.000126
ORF1ab/nsp4319T319delACT---11Q.20.000613
ORF1ab/nsp4319T319delACT---11U.30.003861