CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 315

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4315V315VV3078VsyngtTgtC3462300.664749497-9499
ORF1ab/nsp4315V315VV3078VsyngtTgtA346980.2832379497-9499
ORF1ab/nsp4315V315VV3078VsyngtTgtG346180.05202319497-9499
ORF1ab/nsp4315V315IV3078InonsynGttAtt2992970.9933119497-9499
ORF1ab/nsp4315V315IV3078InonsynGtTAtC29910.003344489497-9499
ORF1ab/nsp4315V315IV3078InonsynGtTAtA29910.003344489497-9499
ORF1ab/nsp4315V315delV3078deldelGTT---26526519497-9499
ORF1ab/nsp4315V315AV3078AnonsyngTtgCt12812819497-9499
ORF1ab/nsp4315V315FV3078FnonsynGttTtt616119497-9499
ORF1ab/nsp4315V315LV3078LnonsynGttCtt33320.9696979497-9499
ORF1ab/nsp4315V315LV3078LnonsynGtTCtC3310.0303039497-9499
ORF1ab/nsp4315V315GV3078GnonsyngTtgGt1190.8181829497-9499
ORF1ab/nsp4315V315GV3078GnonsyngTTgGG1110.09090919497-9499
ORF1ab/nsp4315V315GV3078GnonsyngTTgGA1110.09090919497-9499
ORF1ab/nsp4315V315SV3078SnonsynGTtAGt3319497-9499
ORF1ab/nsp4315V315del2V3078del2delGTt--t2219497-9499
ORF1ab/nsp4315V315MV3078MnonsynGtTAtG2219497-9499
ORF1ab/nsp4315V315RV3078RnonsynGTTAGA210.59497-9499
ORF1ab/nsp4315V315RV3078RnonsynGTTAGG210.59497-9499
ORF1ab/nsp4315V315TV3078TnonsynGTtACt1119497-9499
ORF1ab/nsp4315V315DV3078DnonsyngTtgAt1119497-9499
ORF1ab/nsp4315V315CV3078CnonsynGTtTGt1119497-9499
ORF1ab/nsp4315V315EV3078EnonsyngTTgAG1119497-9499
ORF1ab/nsp4315V315del1V3078del1delGtt-tt1119497-9499
ORF1ab/nsp4315V315NV3078NnonsynGTtAAt1119497-9499

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4315V315VgtTgtC230346All0.000044
ORF1ab/nsp4315V315VgtTgtA98346All0.000019
ORF1ab/nsp4315V315VgtTgtG18346All0.000003
ORF1ab/nsp4315V315IGttAtt297299All0.000057
ORF1ab/nsp4315V315IGtTAtA1299All0
ORF1ab/nsp4315V315IGtTAtC1299All0
ORF1ab/nsp4315V315delGTT---265265All0.000051
ORF1ab/nsp4315V315delGTT---130130B.1.1.70.000116
ORF1ab/nsp4315V315AgTtgCt128128All0.000024
ORF1ab/nsp4315V315VgtTgtC122122B.1.5410.539823
ORF1ab/nsp4315V315IGttAtt108108B.10.000989
ORF1ab/nsp4315V315AgTtgCt8181B.1.2370.402985
ORF1ab/nsp4315V315FGttTtt6161All0.000012
ORF1ab/nsp4315V315IGttAtt3838AY.40.000059
ORF1ab/nsp4315V315FGttTtt3737B.1.1.70.000033
ORF1ab/nsp4315V315LGttCtt3233All0.000006
ORF1ab/nsp4315V315LGtTCtC133All0
ORF1ab/nsp4315V315AgTtgCt3030B.10.000275
ORF1ab/nsp4315V315IGttAtt2727B.1.1770.000356
ORF1ab/nsp4315V315VgtTgtC2525B.1.1770.000329
ORF1ab/nsp4315V315VgtTgtA2525B.1.4590.102041
ORF1ab/nsp4315V315VgtTgtA1724AY.40.000026
ORF1ab/nsp4315V315VgtTgtC724AY.40.000011
ORF1ab/nsp4315V315delGTT---2222B.1.1770.00029
ORF1ab/nsp4315V315delGTT---2020AY.40.000031
ORF1ab/nsp4315V315VgtTgtC1018B.1.1.70.000009
ORF1ab/nsp4315V315VgtTgtA818B.1.1.70.000007
ORF1ab/nsp4315V315VgtTgtA1517B.1.20.000132
ORF1ab/nsp4315V315VgtTgtG117B.1.20.000009
ORF1ab/nsp4315V315VgtTgtC117B.1.20.000009
ORF1ab/nsp4315V315IGttAtt1515AY.980.001185
ORF1ab/nsp4315V315VgtTgtA715B.10.000064
ORF1ab/nsp4315V315VgtTgtC615B.10.000055
ORF1ab/nsp4315V315VgtTgtG215B.10.000018
ORF1ab/nsp4315V315IGttAtt1415B.1.1.70.000013
ORF1ab/nsp4315V315IGtTAtC115B.1.1.70.000001
ORF1ab/nsp4315V315LGttCtt1212AY.40.000019
ORF1ab/nsp4315V315IGttAtt1212B.1.20.000106
ORF1ab/nsp4315V315GgTtgGt911All0.000002
ORF1ab/nsp4315V315GgTTgGG111All0
ORF1ab/nsp4315V315GgTTgGA111All0
ORF1ab/nsp4315V315IGttAtt1010AY.250.00006
ORF1ab/nsp4315V315VgtTgtC1010B.1.1.500.006789
ORF1ab/nsp4315V315IGttAtt1010B.1.2430.000696
ORF1ab/nsp4315V315delGTT---88AY.4.50.00086
ORF1ab/nsp4315V315VgtTgtG88AY.910.005844
ORF1ab/nsp4315V315IGttAtt88B.1.617.20.00003
ORF1ab/nsp4315V315VgtTgtA58P.10.000079
ORF1ab/nsp4315V315VgtTgtC38P.10.000047
ORF1ab/nsp4315V315VgtTgtG47AY.250.000024
ORF1ab/nsp4315V315VgtTgtC37AY.250.000018
ORF1ab/nsp4315V315VgtTgtC77AY.30.00007
ORF1ab/nsp4315V315GgTtgGt460.222222
ORF1ab/nsp4315V315GgTTgGG160.055556
ORF1ab/nsp4315V315GgTTgGA160.055556
ORF1ab/nsp4315V315IGttAtt66B.1.177.210.000459
ORF1ab/nsp4315V315IGttAtt66B.1.5960.000523
ORF1ab/nsp4315V315delGTT---55AY.430.000022
ORF1ab/nsp4315V315FGttTtt55B.10.000046
ORF1ab/nsp4315V315LGttCtt55B.1.1.70.000004
ORF1ab/nsp4315V315delGTT---55B.1.617.20.000019
ORF1ab/nsp4315V315VgtTgtA55P.1.150.001162
ORF1ab/nsp4315V315IGttAtt340.166667
ORF1ab/nsp4315V315IGtTAtA140.055556
ORF1ab/nsp4315V315delGTT---44AY.250.000024
ORF1ab/nsp4315V315VgtTgtC44AY.430.000018
ORF1ab/nsp4315V315AgTtgCt44B.1.1.70.000004
ORF1ab/nsp4315V315VgtTgtC44B.1.2340.000528
ORF1ab/nsp4315V315VgtTgtA24B.1.617.20.000008
ORF1ab/nsp4315V315VgtTgtC24B.1.617.20.000008
ORF1ab/nsp4315V315VgtTgtA44B.1.6370.000292
ORF1ab/nsp4315V315SGTtAGt330.166667
ORF1ab/nsp4315V315SGTtAGt33All0.000001
ORF1ab/nsp4315V315IGttAtt33AY.440.000018
ORF1ab/nsp4315V315delGTT---33AY.46.20.001906
ORF1ab/nsp4315V315VgtTgtC33AY.5.40.00083
ORF1ab/nsp4315V315IGttAtt33B.1.1.570.034483
ORF1ab/nsp4315V315delGTT---33B.1.177.40.000633
ORF1ab/nsp4315V315delGTT---33B.1.177.870.002183
ORF1ab/nsp4315V315delGTT---33B.1.20.000026
ORF1ab/nsp4315V315LGttCtt33B.1.617.20.000011
ORF1ab/nsp4315V315FGttTtt220.111111
ORF1ab/nsp4315V315RGTTAGG120.055556
ORF1ab/nsp4315V315RGTTAGA120.055556
ORF1ab/nsp4315V315VgtTgtA120.055556
ORF1ab/nsp4315V315VgtTgtG120.055556
ORF1ab/nsp4315V315del2GTt--t22All0
ORF1ab/nsp4315V315MGtTAtG22All0
ORF1ab/nsp4315V315RGTTAGA12All0
ORF1ab/nsp4315V315RGTTAGG12All0
ORF1ab/nsp4315V315IGttAtt22AY.1030.000012
ORF1ab/nsp4315V315VgtTgtC12AY.1030.000006
ORF1ab/nsp4315V315VgtTgtA12AY.1030.000006
ORF1ab/nsp4315V315delGTT---22AY.1110.000366
ORF1ab/nsp4315V315VgtTgtC22AY.1190.000071
ORF1ab/nsp4315V315delGTT---22AY.1200.000074
ORF1ab/nsp4315V315delGTT---22AY.190.002281
ORF1ab/nsp4315V315VgtTgtC22AY.230.000139
ORF1ab/nsp4315V315delGTT---22AY.260.000057
ORF1ab/nsp4315V315VgtTgtC22AY.390.000049
ORF1ab/nsp4315V315AgTtgCt22AY.40.000003
ORF1ab/nsp4315V315FGttTtt22AY.430.000009
ORF1ab/nsp4315V315AgTtgCt22AY.440.000012
ORF1ab/nsp4315V315IGttAtt22AY.5.10.007519
ORF1ab/nsp4315V315VgtTgtC22AY.610.00021
ORF1ab/nsp4315V315delGTT---22AY.90.000135
ORF1ab/nsp4315V315VgtTgtA22B.1.10.000036
ORF1ab/nsp4315V315delGTT---22B.1.10.000036
ORF1ab/nsp4315V315IGttAtt22B.1.10.000036
ORF1ab/nsp4315V315delGTT---22B.1.1.3110.000716
ORF1ab/nsp4315V315delGTT---22B.1.1.3120.003824
ORF1ab/nsp4315V315delGTT---22B.1.177.160.001329
ORF1ab/nsp4315V315delGTT---22B.1.177.180.00232
ORF1ab/nsp4315V315VgtTgtC22B.1.177.750.002081
ORF1ab/nsp4315V315VgtTgtC22B.1.2580.000133
ORF1ab/nsp4315V315IGttAtt22B.1.3510.000059
ORF1ab/nsp4315V315FGttTtt22B.1.4270.000101
ORF1ab/nsp4315V315FGttTtt22B.1.4290.000047
ORF1ab/nsp4315V315VgtTgtA12B.1.4290.000024
ORF1ab/nsp4315V315VgtTgtG12B.1.4290.000024
ORF1ab/nsp4315V315VgtTgtC22B.1.5960.000174
ORF1ab/nsp4315V315MGtTAtG110.055556
ORF1ab/nsp4315V315CGTtTGt110.055556
ORF1ab/nsp4315V315delGTT---11AD.20.000219
ORF1ab/nsp4315V315EgTTgAG11All0
ORF1ab/nsp4315V315NGTtAAt11All0
ORF1ab/nsp4315V315CGTtTGt11All0
ORF1ab/nsp4315V315TGTtACt11All0
ORF1ab/nsp4315V315del1Gtt-tt11All0
ORF1ab/nsp4315V315DgTtgAt11All0
ORF1ab/nsp4315V315IGttAtt11AW.10.003049
ORF1ab/nsp4315V315LGttCtt11AY.1100.000113
ORF1ab/nsp4315V315FGttTtt11AY.1170.000085
ORF1ab/nsp4315V315VgtTgtC11AY.1170.000085
ORF1ab/nsp4315V315IGttAtt11AY.120.000316
ORF1ab/nsp4315V315VgtTgtC11AY.1200.000037
ORF1ab/nsp4315V315IGttAtt11AY.1200.000037
ORF1ab/nsp4315V315AgTtgCt11AY.120.10.000321
ORF1ab/nsp4315V315IGttAtt11AY.20.000356
ORF1ab/nsp4315V315IGttAtt11AY.230.00007
ORF1ab/nsp4315V315LGtTCtC11AY.250.000006
ORF1ab/nsp4315V315FGttTtt11AY.250.000006
ORF1ab/nsp4315V315IGttAtt11AY.260.000028
ORF1ab/nsp4315V315VgtTgtG11AY.260.000028
ORF1ab/nsp4315V315IGttAtt11AY.30.00001
ORF1ab/nsp4315V315FGttTtt11AY.350.000233
ORF1ab/nsp4315V315IGttAtt11AY.370.000316
ORF1ab/nsp4315V315IGttAtt11AY.390.000025
ORF1ab/nsp4315V315IGttAtt11AY.39.10.00004
ORF1ab/nsp4315V315FGttTtt11AY.40.000002
ORF1ab/nsp4315V315VgtTgtC11AY.4.20.000022
ORF1ab/nsp4315V315LGttCtt11AY.4.20.000022
ORF1ab/nsp4315V315IGttAtt11AY.4.20.000022
ORF1ab/nsp4315V315delGTT---11AY.4.20.000022
ORF1ab/nsp4315V315TGTtACt11AY.4.20.000022
ORF1ab/nsp4315V315FGttTtt11AY.4.2.10.000149
ORF1ab/nsp4315V315delGTT---11AY.420.00004
ORF1ab/nsp4315V315del1Gtt-tt11AY.430.000004
ORF1ab/nsp4315V315delGTT---11AY.440.000006
ORF1ab/nsp4315V315EgTTgAG11AY.440.000006
ORF1ab/nsp4315V315VgtTgtA11AY.450.000122
ORF1ab/nsp4315V315VgtTgtA11AY.46.40.000165
ORF1ab/nsp4315V315LGttCtt11AY.46.50.000198
ORF1ab/nsp4315V315IGttAtt11AY.46.50.000198
ORF1ab/nsp4315V315LGttCtt11AY.46.60.000072
ORF1ab/nsp4315V315delGTT---11AY.5.30.000337
ORF1ab/nsp4315V315LGttCtt11AY.580.000907
ORF1ab/nsp4315V315delGTT---11AY.60.000041
ORF1ab/nsp4315V315delGTT---11AY.600.000938
ORF1ab/nsp4315V315IGttAtt11AY.610.000105
ORF1ab/nsp4315V315del2GTt--t11AY.720.001361
ORF1ab/nsp4315V315AgTtgCt11AY.740.000116
ORF1ab/nsp4315V315delGTT---11AY.780.001541
ORF1ab/nsp4315V315IGttAtt11AY.850.000427
ORF1ab/nsp4315V315VgtTgtC11AY.90.000068
ORF1ab/nsp4315V315AgTtgCt11AY.98.10.000048
ORF1ab/nsp4315V315delGTT---11AY.990.001049
ORF1ab/nsp4315V315delGTT---11AY.99.10.001553
ORF1ab/nsp4315V315delGTT---11B.10.000009
ORF1ab/nsp4315V315LGttCtt11B.10.000009
ORF1ab/nsp4315V315GgTtgGt11B.10.000009
ORF1ab/nsp4315V315GgTtgGt11B.1.10.000018
ORF1ab/nsp4315V315delGTT---11B.1.1.1390.022727
ORF1ab/nsp4315V315DgTtgAt11B.1.1.1940.00495
ORF1ab/nsp4315V315LGttCtt11B.1.1.2340.012048
ORF1ab/nsp4315V315IGttAtt11B.1.1.280.000311
ORF1ab/nsp4315V315LGttCtt11B.1.1.3080.011765
ORF1ab/nsp4315V315LGttCtt11B.1.1.3180.000302
ORF1ab/nsp4315V315delGTT---11B.1.1.3610.045455
ORF1ab/nsp4315V315delGTT---11B.1.1.370.000193
ORF1ab/nsp4315V315IGttAtt11B.1.1.4090.002833
ORF1ab/nsp4315V315delGTT---11B.1.1.4200.001006
ORF1ab/nsp4315V315IGttAtt11B.1.1.5190.00004
ORF1ab/nsp4315V315GgTtgGt11B.1.1.70.000001
ORF1ab/nsp4315V315del2GTt--t11B.1.1.70.000001
ORF1ab/nsp4315V315delGTT---11B.1.1.700.000341
ORF1ab/nsp4315V315IGttAtt11B.1.1030.019231
ORF1ab/nsp4315V315IGttAtt11B.1.1110.001175
ORF1ab/nsp4315V315delGTT---11B.1.160.230.004831
ORF1ab/nsp4315V315delGTT---11B.1.160.70.002079
ORF1ab/nsp4315V315FGttTtt11B.1.1770.000013
ORF1ab/nsp4315V315delGTT---11B.1.177.110.001698
ORF1ab/nsp4315V315delGTT---11B.1.177.150.000631
ORF1ab/nsp4315V315IGttAtt11B.1.177.160.000664
ORF1ab/nsp4315V315delGTT---11B.1.177.190.001431
ORF1ab/nsp4315V315delGTT---11B.1.177.20.004545
ORF1ab/nsp4315V315GgTtgGt11B.1.177.40.000211
ORF1ab/nsp4315V315IGttAtt11B.1.177.540.000606
ORF1ab/nsp4315V315delGTT---11B.1.177.540.000606
ORF1ab/nsp4315V315delGTT---11B.1.177.580.001332
ORF1ab/nsp4315V315VgtTgtA11B.1.177.580.001332
ORF1ab/nsp4315V315delGTT---11B.1.177.690.001484
ORF1ab/nsp4315V315GgTtgGt11B.1.177.870.000728
ORF1ab/nsp4315V315delGTT---11B.1.177.90.001332
ORF1ab/nsp4315V315FGttTtt11B.1.20.000009
ORF1ab/nsp4315V315LGttCtt11B.1.20.000009
ORF1ab/nsp4315V315AgTtgCt11B.1.2430.00007
ORF1ab/nsp4315V315delGTT---11B.1.2580.000067
ORF1ab/nsp4315V315IGttAtt11B.1.2580.000067
ORF1ab/nsp4315V315VgtTgtC11B.1.3510.00003
ORF1ab/nsp4315V315delGTT---11B.1.360.000146
ORF1ab/nsp4315V315delGTT---11B.1.36.180.00042
ORF1ab/nsp4315V315LGttCtt11B.1.362.20.004717
ORF1ab/nsp4315V315delGTT---11B.1.3890.001002
ORF1ab/nsp4315V315delGTT---11B.1.4150.014286
ORF1ab/nsp4315V315FGttTtt11B.1.5230.002451
ORF1ab/nsp4315V315AgTtgCt11B.1.5240.001406
ORF1ab/nsp4315V315delGTT---11B.1.5250.000113
ORF1ab/nsp4315V315VgtTgtA11B.1.5250.000113
ORF1ab/nsp4315V315FGttTtt11B.1.5260.000024
ORF1ab/nsp4315V315VgtTgtA11B.1.5260.000024
ORF1ab/nsp4315V315IGttAtt11B.1.5320.006211
ORF1ab/nsp4315V315AgTtgCt11B.1.5960.000087
ORF1ab/nsp4315V315NGTtAAt11B.1.617.20.000004
ORF1ab/nsp4315V315MGtTAtG11B.1.617.20.000004
ORF1ab/nsp4315V315FGttTtt11B.1.617.20.000004
ORF1ab/nsp4315V315AgTtgCt11B.1.617.20.000004
ORF1ab/nsp4315V315delGTT---11B.1.6210.000089
ORF1ab/nsp4315V315delGTT---11B.150.017544
ORF1ab/nsp4315V315VgtTgtC11B.310.003731
ORF1ab/nsp4315V315delGTT---11C.170.055556
ORF1ab/nsp4315V315IGttAtt11C.350.000774
ORF1ab/nsp4315V315delGTT---11C.360.000911
ORF1ab/nsp4315V315IGttAtt11C.370.000116
ORF1ab/nsp4315V315AgTtgCt11C.370.000116
ORF1ab/nsp4315V315VgtTgtC11D.20.000075
ORF1ab/nsp4315V315LGttCtt11P.10.000016
ORF1ab/nsp4315V315delGTT---11P.1.100.000269
ORF1ab/nsp4315V315FGttTtt11P.20.000187
ORF1ab/nsp4315V315delGTT---11Q.10.000126
ORF1ab/nsp4315V315IGttAtt11Q.30.000145
ORF1ab/nsp4315V315VgtTgtC11Q.30.000145
ORF1ab/nsp4315V315AgTtgCt11Q.80.000165
ORF1ab/nsp4315V315delGTT---11U.30.003861