CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 315 | V315V | V3078V | syn | gtT | gtC | 346 | 230 | 0.66474 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315V | V3078V | syn | gtT | gtA | 346 | 98 | 0.283237 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315V | V3078V | syn | gtT | gtG | 346 | 18 | 0.0520231 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315I | V3078I | nonsyn | Gtt | Att | 299 | 297 | 0.993311 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315I | V3078I | nonsyn | GtT | AtC | 299 | 1 | 0.00334448 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315I | V3078I | nonsyn | GtT | AtA | 299 | 1 | 0.00334448 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315del | V3078del | del | GTT | --- | 265 | 265 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315A | V3078A | nonsyn | gTt | gCt | 128 | 128 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315F | V3078F | nonsyn | Gtt | Ttt | 61 | 61 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315L | V3078L | nonsyn | Gtt | Ctt | 33 | 32 | 0.969697 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315L | V3078L | nonsyn | GtT | CtC | 33 | 1 | 0.030303 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315G | V3078G | nonsyn | gTt | gGt | 11 | 9 | 0.818182 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315G | V3078G | nonsyn | gTT | gGG | 11 | 1 | 0.0909091 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315G | V3078G | nonsyn | gTT | gGA | 11 | 1 | 0.0909091 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315S | V3078S | nonsyn | GTt | AGt | 3 | 3 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315del2 | V3078del2 | del | GTt | --t | 2 | 2 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315M | V3078M | nonsyn | GtT | AtG | 2 | 2 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315R | V3078R | nonsyn | GTT | AGA | 2 | 1 | 0.5 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315R | V3078R | nonsyn | GTT | AGG | 2 | 1 | 0.5 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315T | V3078T | nonsyn | GTt | ACt | 1 | 1 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315D | V3078D | nonsyn | gTt | gAt | 1 | 1 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315C | V3078C | nonsyn | GTt | TGt | 1 | 1 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315E | V3078E | nonsyn | gTT | gAG | 1 | 1 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315del1 | V3078del1 | del | Gtt | -tt | 1 | 1 | 1 | 9497-9499 |
ORF1ab/nsp4 | 315 | V315N | V3078N | nonsyn | GTt | AAt | 1 | 1 | 1 | 9497-9499 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 230 | 346 | All | 0.000044 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 98 | 346 | All | 0.000019 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtG | 18 | 346 | All | 0.000003 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 297 | 299 | All | 0.000057 |
ORF1ab/nsp4 | 315 | V315I | GtT | AtA | 1 | 299 | All | 0 |
ORF1ab/nsp4 | 315 | V315I | GtT | AtC | 1 | 299 | All | 0 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 265 | 265 | All | 0.000051 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 130 | 130 | B.1.1.7 | 0.000116 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 128 | 128 | All | 0.000024 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 122 | 122 | B.1.541 | 0.539823 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 108 | 108 | B.1 | 0.000989 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 81 | 81 | B.1.237 | 0.402985 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 61 | 61 | All | 0.000012 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 38 | 38 | AY.4 | 0.000059 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 32 | 33 | All | 0.000006 |
ORF1ab/nsp4 | 315 | V315L | GtT | CtC | 1 | 33 | All | 0 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 27 | 27 | B.1.177 | 0.000356 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 25 | 25 | B.1.177 | 0.000329 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 25 | 25 | B.1.459 | 0.102041 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 17 | 24 | AY.4 | 0.000026 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 7 | 24 | AY.4 | 0.000011 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 22 | 22 | B.1.177 | 0.00029 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 10 | 18 | B.1.1.7 | 0.000009 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 8 | 18 | B.1.1.7 | 0.000007 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 15 | 17 | B.1.2 | 0.000132 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtG | 1 | 17 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 1 | 17 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 15 | 15 | AY.98 | 0.001185 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 7 | 15 | B.1 | 0.000064 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 6 | 15 | B.1 | 0.000055 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtG | 2 | 15 | B.1 | 0.000018 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 14 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp4 | 315 | V315I | GtT | AtC | 1 | 15 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 12 | 12 | B.1.2 | 0.000106 |
ORF1ab/nsp4 | 315 | V315G | gTt | gGt | 9 | 11 | All | 0.000002 |
ORF1ab/nsp4 | 315 | V315G | gTT | gGG | 1 | 11 | All | 0 |
ORF1ab/nsp4 | 315 | V315G | gTT | gGA | 1 | 11 | All | 0 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 10 | 10 | B.1.1.50 | 0.006789 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtG | 8 | 8 | AY.91 | 0.005844 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 5 | 8 | P.1 | 0.000079 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 3 | 8 | P.1 | 0.000047 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtG | 4 | 7 | AY.25 | 0.000024 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 3 | 7 | AY.25 | 0.000018 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp4 | 315 | V315G | gTt | gGt | 4 | 6 | 0.222222 | |
ORF1ab/nsp4 | 315 | V315G | gTT | gGG | 1 | 6 | 0.055556 | |
ORF1ab/nsp4 | 315 | V315G | gTT | gGA | 1 | 6 | 0.055556 | |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 6 | 6 | B.1.177.21 | 0.000459 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 3 | 4 | 0.166667 | |
ORF1ab/nsp4 | 315 | V315I | GtT | AtA | 1 | 4 | 0.055556 | |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 2 | 4 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp4 | 315 | V315S | GTt | AGt | 3 | 3 | 0.166667 | |
ORF1ab/nsp4 | 315 | V315S | GTt | AGt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 3 | 3 | B.1.1.57 | 0.034483 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 315 | V315R | GTT | AGG | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 315 | V315R | GTT | AGA | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 315 | V315V | gtT | gtG | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 315 | V315del2 | GTt | --t | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 315 | V315M | GtT | AtG | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 315 | V315R | GTT | AGA | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 315 | V315R | GTT | AGG | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 2 | 2 | AY.5.1 | 0.007519 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtG | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp4 | 315 | V315M | GtT | AtG | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 315 | V315C | GTt | TGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 315 | V315E | gTT | gAG | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 315 | V315N | GTt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 315 | V315C | GTt | TGt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 315 | V315T | GTt | ACt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 315 | V315del1 | Gtt | -tt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 315 | V315D | gTt | gAt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 315 | V315L | GtT | CtC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 315 | V315T | GTt | ACt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 315 | V315del1 | Gtt | -tt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 315 | V315E | gTT | gAG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp4 | 315 | V315del2 | GTt | --t | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 315 | V315G | gTt | gGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 315 | V315G | gTt | gGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp4 | 315 | V315D | gTt | gAt | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | B.1.1.234 | 0.012048 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | B.1.1.308 | 0.011765 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 315 | V315G | gTt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 315 | V315del2 | GTt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp4 | 315 | V315G | gTt | gGt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 315 | V315G | gTt | gGt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | B.1.532 | 0.006211 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 315 | V315N | GTt | AAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 315 | V315M | GtT | AtG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 315 | V315L | Gtt | Ctt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 315 | V315F | Gtt | Ttt | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 315 | V315I | Gtt | Att | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp4 | 315 | V315V | gtT | gtC | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp4 | 315 | V315A | gTt | gCt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp4 | 315 | V315del | GTT | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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