CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 311 & Codon = taT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4311Y311YY3074YsyntaCtaT1481148119485-9487

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4311Y311YtaCtaT14811481All0.000283
ORF1ab/nsp4311Y311YtaCtaT398398B.1.1.70.000356
ORF1ab/nsp4311Y311YtaCtaT202202AY.40.000314
ORF1ab/nsp4311Y311YtaCtaT7777AY.30.000766
ORF1ab/nsp4311Y311YtaCtaT6565B.1.617.20.000245
ORF1ab/nsp4311Y311YtaCtaT6262AA.51
ORF1ab/nsp4311Y311YtaCtaT5252AY.46.40.008554
ORF1ab/nsp4311Y311YtaCtaT5050AY.800.056433
ORF1ab/nsp4311Y311YtaCtaT3838B.1.20.000335
ORF1ab/nsp4311Y311YtaCtaT3535AY.250.000211
ORF1ab/nsp4311Y311YtaCtaT2626AY.440.000158
ORF1ab/nsp4311Y311YtaCtaT2626B.1.1600.000811
ORF1ab/nsp4311Y311YtaCtaT2222AY.390.000544
ORF1ab/nsp4311Y311YtaCtaT2222B.1.3510.000654
ORF1ab/nsp4311Y311YtaCtaT2121AY.1020.000557
ORF1ab/nsp4311Y311YtaCtaT2121B.1.1.10.006861
ORF1ab/nsp4311Y311YtaCtaT1919AY.1030.000118
ORF1ab/nsp4311Y311YtaCtaT1919B.10.000174
ORF1ab/nsp4311Y311YtaCtaT1818AY.430.00008
ORF1ab/nsp4311Y311YtaCtaT1818B.1.36.80.018
ORF1ab/nsp4311Y311YtaCtaT1212B.1.1770.000158
ORF1ab/nsp4311Y311YtaCtaT1010B.1.4530.032362
ORF1ab/nsp4311Y311YtaCtaT99AY.130.001449
ORF1ab/nsp4311Y311YtaCtaT99B.1.177.830.013333
ORF1ab/nsp4311Y311YtaCtaT99P.10.000142
ORF1ab/nsp4311Y311YtaCtaT88AY.1210.001083
ORF1ab/nsp4311Y311YtaCtaT88AY.340.000776
ORF1ab/nsp4311Y311YtaCtaT88AZ.10.006938
ORF1ab/nsp4311Y311YtaCtaT88B.1.4290.000188
ORF1ab/nsp4311Y311YtaCtaT77AY.50.000145
ORF1ab/nsp4311Y311YtaCtaT77AY.750.000392
ORF1ab/nsp4311Y311YtaCtaT77B.1.1.250.00398
ORF1ab/nsp4311Y311YtaCtaT66AY.39.10.000238
ORF1ab/nsp4311Y311YtaCtaT66AY.4.20.00013
ORF1ab/nsp4311Y311YtaCtaT55AY.1190.000177
ORF1ab/nsp4311Y311YtaCtaT55AY.200.000194
ORF1ab/nsp4311Y311YtaCtaT55B.1.3130.032895
ORF1ab/nsp4311Y311YtaCtaT55B.1.5260.000118
ORF1ab/nsp4311Y311YtaCtaT55P.20.000933
ORF1ab/nsp4311Y311YtaCtaT44AY.1200.000149
ORF1ab/nsp4311Y311YtaCtaT44AY.480.00186
ORF1ab/nsp4311Y311YtaCtaT44AY.98.10.000194
ORF1ab/nsp4311Y311YtaCtaT44AY.99.20.000369
ORF1ab/nsp4311Y311YtaCtaT44B.1.10.000073
ORF1ab/nsp4311Y311YtaCtaT44B.1.2210.000284
ORF1ab/nsp4311Y311YtaCtaT44B.1.3460.005242
ORF1ab/nsp4311Y311YtaCtaT44B.1.5770.002749
ORF1ab/nsp4311Y311YtaCtaT44C.370.000464
ORF1ab/nsp4311Y311YtaCtaT44P.1.150.000929
ORF1ab/nsp4311Y311YtaCtaT33AY.260.000085
ORF1ab/nsp4311Y311YtaCtaT33AY.610.000314
ORF1ab/nsp4311Y311YtaCtaT33AY.9.20.00011
ORF1ab/nsp4311Y311YtaCtaT33AY.940.001328
ORF1ab/nsp4311Y311YtaCtaT33B.1.1.700.001023
ORF1ab/nsp4311Y311YtaCtaT33B.1.2430.000209
ORF1ab/nsp4311Y311YtaCtaT33B.1.4780.035294
ORF1ab/nsp4311Y311YtaCtaT33B.1.5960.000261
ORF1ab/nsp4311Y311YtaCtaT33B.1.6280.001057
ORF1ab/nsp4311Y311YtaCtaT220.111111
ORF1ab/nsp4311Y311YtaCtaT22AY.1000.000092
ORF1ab/nsp4311Y311YtaCtaT22AY.120.000632
ORF1ab/nsp4311Y311YtaCtaT22AY.230.000139
ORF1ab/nsp4311Y311YtaCtaT22AY.240.000862
ORF1ab/nsp4311Y311YtaCtaT22AY.290.000032
ORF1ab/nsp4311Y311YtaCtaT22AY.380.000999
ORF1ab/nsp4311Y311YtaCtaT22AY.580.001815
ORF1ab/nsp4311Y311YtaCtaT22AY.770.002255
ORF1ab/nsp4311Y311YtaCtaT22AY.9.10.000167
ORF1ab/nsp4311Y311YtaCtaT22B.1.1.2220.000408
ORF1ab/nsp4311Y311YtaCtaT22B.1.1.280.000622
ORF1ab/nsp4311Y311YtaCtaT22B.1.177.330.003289
ORF1ab/nsp4311Y311YtaCtaT22B.1.3110.000549
ORF1ab/nsp4311Y311YtaCtaT22B.1.5610.000794
ORF1ab/nsp4311Y311YtaCtaT22B.1.6370.000146
ORF1ab/nsp4311Y311YtaCtaT22C.140.008658
ORF1ab/nsp4311Y311YtaCtaT22D.20.00015
ORF1ab/nsp4311Y311YtaCtaT22P.1.120.000968
ORF1ab/nsp4311Y311YtaCtaT22P.1.40.001953
ORF1ab/nsp4311Y311YtaCtaT11A.250.018182
ORF1ab/nsp4311Y311YtaCtaT11AY.1100.000113
ORF1ab/nsp4311Y311YtaCtaT11AY.1180.000063
ORF1ab/nsp4311Y311YtaCtaT11AY.140.000088
ORF1ab/nsp4311Y311YtaCtaT11AY.34.10.00051
ORF1ab/nsp4311Y311YtaCtaT11AY.370.000316
ORF1ab/nsp4311Y311YtaCtaT11AY.4.10.000737
ORF1ab/nsp4311Y311YtaCtaT11AY.420.00004
ORF1ab/nsp4311Y311YtaCtaT11AY.460.000104
ORF1ab/nsp4311Y311YtaCtaT11AY.46.30.000934
ORF1ab/nsp4311Y311YtaCtaT11AY.46.60.000072
ORF1ab/nsp4311Y311YtaCtaT11AY.60.000041
ORF1ab/nsp4311Y311YtaCtaT11AY.7.10.000113
ORF1ab/nsp4311Y311YtaCtaT11AY.860.00083
ORF1ab/nsp4311Y311YtaCtaT11B0.000128
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.2690.001353
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.3060.000438
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.3480.000796
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.370.000193
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.3720.000689
ORF1ab/nsp4311Y311YtaCtaT11B.1.1490.003425
ORF1ab/nsp4311Y311YtaCtaT11B.1.160.330.004425
ORF1ab/nsp4311Y311YtaCtaT11B.1.177.150.000631
ORF1ab/nsp4311Y311YtaCtaT11B.1.177.530.002392
ORF1ab/nsp4311Y311YtaCtaT11B.1.177.870.000728
ORF1ab/nsp4311Y311YtaCtaT11B.1.258.110.000396
ORF1ab/nsp4311Y311YtaCtaT11B.1.360.000146
ORF1ab/nsp4311Y311YtaCtaT11B.1.36.290.000517
ORF1ab/nsp4311Y311YtaCtaT11B.1.36.70.004
ORF1ab/nsp4311Y311YtaCtaT11B.1.3960.000706
ORF1ab/nsp4311Y311YtaCtaT11B.1.4000.000429
ORF1ab/nsp4311Y311YtaCtaT11B.1.5110.034483
ORF1ab/nsp4311Y311YtaCtaT11B.1.5680.001111
ORF1ab/nsp4311Y311YtaCtaT11B.1.5750.000303
ORF1ab/nsp4311Y311YtaCtaT11B.1.5950.000261
ORF1ab/nsp4311Y311YtaCtaT11B.1.6090.000479
ORF1ab/nsp4311Y311YtaCtaT11B.1.6190.000871
ORF1ab/nsp4311Y311YtaCtaT11B.1.6200.000946
ORF1ab/nsp4311Y311YtaCtaT11B.1.6210.000089
ORF1ab/nsp4311Y311YtaCtaT11B.6.80.008264
ORF1ab/nsp4311Y311YtaCtaT11C.160.00106
ORF1ab/nsp4311Y311YtaCtaT11P.1.170.000162
ORF1ab/nsp4311Y311YtaCtaT11P.1.80.004785

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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