CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 311 & Codon = tGc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4311Y311CY3074CnonsyntActGc89880.9887649485-9487

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4311Y311CtActGc8889All0.000017
ORF1ab/nsp4311Y311CtActGc2626AY.40.00004
ORF1ab/nsp4311Y311CtActGc1010B.1.4290.000235
ORF1ab/nsp4311Y311CtActGc66AY.1030.000037
ORF1ab/nsp4311Y311CtActGc55AY.1020.000133
ORF1ab/nsp4311Y311CtActGc55B.1.20.000044
ORF1ab/nsp4311Y311CtActGc44AY.440.000024
ORF1ab/nsp4311Y311CtActGc33AY.30.00003
ORF1ab/nsp4311Y311CtActGc23B.1.1.70.000002
ORF1ab/nsp4311Y311CtActGc33B.1.617.20.000011
ORF1ab/nsp4311Y311CtActGc22AY.1100.000225
ORF1ab/nsp4311Y311CtActGc22AY.120.10.000642
ORF1ab/nsp4311Y311CtActGc22AY.430.000009
ORF1ab/nsp4311Y311CtActGc11AY.1000.000046
ORF1ab/nsp4311Y311CtActGc11AY.1170.000085
ORF1ab/nsp4311Y311CtActGc11AY.200.000039
ORF1ab/nsp4311Y311CtActGc11AY.230.00007
ORF1ab/nsp4311Y311CtActGc11AY.250.000006
ORF1ab/nsp4311Y311CtActGc11AY.290.000016
ORF1ab/nsp4311Y311CtActGc11AY.4.20.000022
ORF1ab/nsp4311Y311CtActGc11AY.4.30.000842
ORF1ab/nsp4311Y311CtActGc11AY.400.000964
ORF1ab/nsp4311Y311CtActGc11AY.690.000187
ORF1ab/nsp4311Y311CtActGc11B.10.000009
ORF1ab/nsp4311Y311CtActGc11B.1.10.000018
ORF1ab/nsp4311Y311CtActGc11B.1.1.1760.000439
ORF1ab/nsp4311Y311CtActGc11B.1.1.3260.001761
ORF1ab/nsp4311Y311CtActGc11B.1.1.3330.001076
ORF1ab/nsp4311Y311CtActGc11B.1.5960.000087
ORF1ab/nsp4311Y311CtActGc11B.60.00091
ORF1ab/nsp4311Y311CtActGc11C.370.000116

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.