CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 311

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4311Y311YY3074YsyntaCtaT1481148119485-9487
ORF1ab/nsp4311Y311HY3074HnonsynTacCac35135119485-9487
ORF1ab/nsp4311Y311delY3074deldelTAC---25425419485-9487
ORF1ab/nsp4311Y311CY3074CnonsyntActGc89880.9887649485-9487
ORF1ab/nsp4311Y311CY3074CnonsyntACtGT8910.0112369485-9487
ORF1ab/nsp4311Y311NY3074NnonsynTacAac960.6666679485-9487
ORF1ab/nsp4311Y311NY3074NnonsynTaCAaT930.3333339485-9487
ORF1ab/nsp4311Y311FY3074FnonsyntActTc750.7142869485-9487
ORF1ab/nsp4311Y311FY3074FnonsyntACtTT720.2857149485-9487
ORF1ab/nsp4311Y311XY3074XnonsyntaCtaA5519485-9487
ORF1ab/nsp4311Y311IY3074InonsynTACATA420.59485-9487
ORF1ab/nsp4311Y311IY3074InonsynTACATT410.259485-9487
ORF1ab/nsp4311Y311IY3074InonsynTAcATc410.259485-9487
ORF1ab/nsp4311Y311DY3074DnonsynTacGac3319485-9487
ORF1ab/nsp4311Y311del1Y3074del1delTac-ac320.6666679485-9487
ORF1ab/nsp4311Y311del1Y3074del1deltAct-c310.3333339485-9487
ORF1ab/nsp4311Y311del2Y3074del2deltACt--2219485-9487
ORF1ab/nsp4311Y311VY3074VnonsynTAcGTc1119485-9487
ORF1ab/nsp4311Y311LY3074LnonsyntACtTA1119485-9487
ORF1ab/nsp4311Y311SY3074SnonsyntActCc1119485-9487
ORF1ab/nsp4311Y311QY3074QnonsynTaCCaG1119485-9487

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4311Y311YtaCtaT14811481All0.000283
ORF1ab/nsp4311Y311YtaCtaT398398B.1.1.70.000356
ORF1ab/nsp4311Y311HTacCac351351All0.000067
ORF1ab/nsp4311Y311delTAC---254254All0.000049
ORF1ab/nsp4311Y311YtaCtaT202202AY.40.000314
ORF1ab/nsp4311Y311delTAC---131131B.1.1.70.000117
ORF1ab/nsp4311Y311CtActGc8889All0.000017
ORF1ab/nsp4311Y311CtACtGT189All0
ORF1ab/nsp4311Y311YtaCtaT7777AY.30.000766
ORF1ab/nsp4311Y311YtaCtaT6565B.1.617.20.000245
ORF1ab/nsp4311Y311YtaCtaT6262AA.51
ORF1ab/nsp4311Y311YtaCtaT5252AY.46.40.008554
ORF1ab/nsp4311Y311YtaCtaT5050AY.800.056433
ORF1ab/nsp4311Y311HTacCac4747B.1.20.000414
ORF1ab/nsp4311Y311YtaCtaT3838B.1.20.000335
ORF1ab/nsp4311Y311YtaCtaT3535AY.250.000211
ORF1ab/nsp4311Y311HTacCac3030B.1.1.5190.001191
ORF1ab/nsp4311Y311HTacCac3030B.1.1.70.000027
ORF1ab/nsp4311Y311HTacCac3030B.1.177.70.004946
ORF1ab/nsp4311Y311HTacCac2727AY.1190.000953
ORF1ab/nsp4311Y311CtActGc2626AY.40.00004
ORF1ab/nsp4311Y311YtaCtaT2626AY.440.000158
ORF1ab/nsp4311Y311YtaCtaT2626B.1.1600.000811
ORF1ab/nsp4311Y311YtaCtaT2222AY.390.000544
ORF1ab/nsp4311Y311delTAC---2222B.1.1770.00029
ORF1ab/nsp4311Y311YtaCtaT2222B.1.3510.000654
ORF1ab/nsp4311Y311YtaCtaT2121AY.1020.000557
ORF1ab/nsp4311Y311YtaCtaT2121B.1.1.10.006861
ORF1ab/nsp4311Y311delTAC---2020AY.40.000031
ORF1ab/nsp4311Y311YtaCtaT1919AY.1030.000118
ORF1ab/nsp4311Y311YtaCtaT1919B.10.000174
ORF1ab/nsp4311Y311YtaCtaT1818AY.430.00008
ORF1ab/nsp4311Y311YtaCtaT1818B.1.36.80.018
ORF1ab/nsp4311Y311HTacCac1818B.1.617.20.000068
ORF1ab/nsp4311Y311HTacCac1616AY.40.000025
ORF1ab/nsp4311Y311HTacCac1313B.10.000119
ORF1ab/nsp4311Y311YtaCtaT1212B.1.1770.000158
ORF1ab/nsp4311Y311HTacCac1111AY.1030.000068
ORF1ab/nsp4311Y311HTacCac1111B.1.2340.001451
ORF1ab/nsp4311Y311CtActGc1010B.1.4290.000235
ORF1ab/nsp4311Y311YtaCtaT1010B.1.4530.032362
ORF1ab/nsp4311Y311NTacAac69All0.000001
ORF1ab/nsp4311Y311NTaCAaT39All0.000001
ORF1ab/nsp4311Y311YtaCtaT99AY.130.001449
ORF1ab/nsp4311Y311YtaCtaT99B.1.177.830.013333
ORF1ab/nsp4311Y311YtaCtaT99P.10.000142
ORF1ab/nsp4311Y311YtaCtaT88AY.1210.001083
ORF1ab/nsp4311Y311YtaCtaT88AY.340.000776
ORF1ab/nsp4311Y311delTAC---88AY.4.50.00086
ORF1ab/nsp4311Y311YtaCtaT88AZ.10.006938
ORF1ab/nsp4311Y311HTacCac88B.1.1600.00025
ORF1ab/nsp4311Y311YtaCtaT88B.1.4290.000188
ORF1ab/nsp4311Y311FtActTc57All0.000001
ORF1ab/nsp4311Y311FtACtTT27All0
ORF1ab/nsp4311Y311HTacCac77AY.420.000282
ORF1ab/nsp4311Y311YtaCtaT77AY.50.000145
ORF1ab/nsp4311Y311YtaCtaT77AY.750.000392
ORF1ab/nsp4311Y311YtaCtaT77B.1.1.250.00398
ORF1ab/nsp4311Y311HTacCac77B.1.3710.007856
ORF1ab/nsp4311Y311CtActGc66AY.1030.000037
ORF1ab/nsp4311Y311HTacCac66AY.250.000036
ORF1ab/nsp4311Y311YtaCtaT66AY.39.10.000238
ORF1ab/nsp4311Y311YtaCtaT66AY.4.20.00013
ORF1ab/nsp4311Y311HTacCac66B.1.440.05
ORF1ab/nsp4311Y311FtActTc350.166667
ORF1ab/nsp4311Y311FtACtTT250.111111
ORF1ab/nsp4311Y311XtaCtaA55All0.000001
ORF1ab/nsp4311Y311CtActGc55AY.1020.000133
ORF1ab/nsp4311Y311YtaCtaT55AY.1190.000177
ORF1ab/nsp4311Y311YtaCtaT55AY.200.000194
ORF1ab/nsp4311Y311HTacCac55AY.440.00003
ORF1ab/nsp4311Y311CtActGc55B.1.20.000044
ORF1ab/nsp4311Y311YtaCtaT55B.1.3130.032895
ORF1ab/nsp4311Y311YtaCtaT55B.1.5260.000118
ORF1ab/nsp4311Y311YtaCtaT55P.20.000933
ORF1ab/nsp4311Y311ITACATA24All0
ORF1ab/nsp4311Y311ITACATT14All0
ORF1ab/nsp4311Y311ITAcATc14All0
ORF1ab/nsp4311Y311YtaCtaT44AY.1200.000149
ORF1ab/nsp4311Y311delTAC---44AY.430.000018
ORF1ab/nsp4311Y311CtActGc44AY.440.000024
ORF1ab/nsp4311Y311YtaCtaT44AY.480.00186
ORF1ab/nsp4311Y311HTacCac44AY.50.000083
ORF1ab/nsp4311Y311YtaCtaT44AY.98.10.000194
ORF1ab/nsp4311Y311YtaCtaT44AY.99.20.000369
ORF1ab/nsp4311Y311YtaCtaT44B.1.10.000073
ORF1ab/nsp4311Y311YtaCtaT44B.1.2210.000284
ORF1ab/nsp4311Y311YtaCtaT44B.1.3460.005242
ORF1ab/nsp4311Y311HTacCac44B.1.360.000584
ORF1ab/nsp4311Y311HTacCac44B.1.5260.000094
ORF1ab/nsp4311Y311YtaCtaT44B.1.5770.002749
ORF1ab/nsp4311Y311delTAC---44B.1.617.20.000015
ORF1ab/nsp4311Y311YtaCtaT44C.370.000464
ORF1ab/nsp4311Y311HTacCac44P.10.000063
ORF1ab/nsp4311Y311YtaCtaT44P.1.150.000929
ORF1ab/nsp4311Y311DTacGac33All0.000001
ORF1ab/nsp4311Y311del1Tac-ac23All0
ORF1ab/nsp4311Y311del1tAct-c13All0
ORF1ab/nsp4311Y311HTacCac33AY.1020.00008
ORF1ab/nsp4311Y311HTacCac33AY.1170.000254
ORF1ab/nsp4311Y311YtaCtaT33AY.260.000085
ORF1ab/nsp4311Y311CtActGc33AY.30.00003
ORF1ab/nsp4311Y311HTacCac33AY.430.000013
ORF1ab/nsp4311Y311delTAC---33AY.46.20.001906
ORF1ab/nsp4311Y311YtaCtaT33AY.610.000314
ORF1ab/nsp4311Y311YtaCtaT33AY.9.20.00011
ORF1ab/nsp4311Y311YtaCtaT33AY.940.001328
ORF1ab/nsp4311Y311HTacCac33B.1.10.000054
ORF1ab/nsp4311Y311HTacCac33B.1.1.330.001263
ORF1ab/nsp4311Y311CtActGc23B.1.1.70.000002
ORF1ab/nsp4311Y311CtACtGT13B.1.1.70.000001
ORF1ab/nsp4311Y311YtaCtaT33B.1.1.700.001023
ORF1ab/nsp4311Y311delTAC---33B.1.177.40.000633
ORF1ab/nsp4311Y311HTacCac33B.1.177.820.001432
ORF1ab/nsp4311Y311delTAC---33B.1.177.870.002183
ORF1ab/nsp4311Y311YtaCtaT33B.1.2430.000209
ORF1ab/nsp4311Y311HTacCac33B.1.4290.000071
ORF1ab/nsp4311Y311YtaCtaT33B.1.4780.035294
ORF1ab/nsp4311Y311YtaCtaT33B.1.5960.000261
ORF1ab/nsp4311Y311HTacCac33B.1.5960.000261
ORF1ab/nsp4311Y311CtActGc33B.1.617.20.000011
ORF1ab/nsp4311Y311YtaCtaT33B.1.6280.001057
ORF1ab/nsp4311Y311YtaCtaT220.111111
ORF1ab/nsp4311Y311ITAcATc120.055556
ORF1ab/nsp4311Y311NTaCAaT120.055556
ORF1ab/nsp4311Y311NTacAac120.055556
ORF1ab/nsp4311Y311ITACATT120.055556
ORF1ab/nsp4311Y311del2tACt--22All0
ORF1ab/nsp4311Y311YtaCtaT22AY.1000.000092
ORF1ab/nsp4311Y311CtActGc22AY.1100.000225
ORF1ab/nsp4311Y311delTAC---22AY.1110.000366
ORF1ab/nsp4311Y311YtaCtaT22AY.120.000632
ORF1ab/nsp4311Y311delTAC---22AY.1200.000074
ORF1ab/nsp4311Y311CtActGc22AY.120.10.000642
ORF1ab/nsp4311Y311delTAC---22AY.190.002281
ORF1ab/nsp4311Y311YtaCtaT22AY.230.000139
ORF1ab/nsp4311Y311YtaCtaT22AY.240.000862
ORF1ab/nsp4311Y311delTAC---22AY.260.000057
ORF1ab/nsp4311Y311YtaCtaT22AY.290.000032
ORF1ab/nsp4311Y311HTacCac22AY.30.00002
ORF1ab/nsp4311Y311YtaCtaT22AY.380.000999
ORF1ab/nsp4311Y311HTacCac22AY.39.10.000079
ORF1ab/nsp4311Y311HTacCac22AY.4.20.000043
ORF1ab/nsp4311Y311CtActGc22AY.430.000009
ORF1ab/nsp4311Y311YtaCtaT22AY.580.001815
ORF1ab/nsp4311Y311HTacCac22AY.7.10.000225
ORF1ab/nsp4311Y311YtaCtaT22AY.770.002255
ORF1ab/nsp4311Y311delTAC---22AY.90.000135
ORF1ab/nsp4311Y311YtaCtaT22AY.9.10.000167
ORF1ab/nsp4311Y311NTacAac12B.10.000009
ORF1ab/nsp4311Y311NTaCAaT12B.10.000009
ORF1ab/nsp4311Y311delTAC---22B.1.10.000036
ORF1ab/nsp4311Y311NTacAac12B.1.10.000018
ORF1ab/nsp4311Y311NTaCAaT12B.1.10.000018
ORF1ab/nsp4311Y311HTacCac22B.1.1.2140.000111
ORF1ab/nsp4311Y311YtaCtaT22B.1.1.2220.000408
ORF1ab/nsp4311Y311YtaCtaT22B.1.1.280.000622
ORF1ab/nsp4311Y311delTAC---22B.1.1.3110.000716
ORF1ab/nsp4311Y311delTAC---22B.1.1.3120.003824
ORF1ab/nsp4311Y311del1Tac-ac22B.1.1.70.000002
ORF1ab/nsp4311Y311HTacCac22B.1.160.220.013514
ORF1ab/nsp4311Y311HTacCac22B.1.1770.000026
ORF1ab/nsp4311Y311delTAC---22B.1.177.160.001329
ORF1ab/nsp4311Y311delTAC---22B.1.177.180.00232
ORF1ab/nsp4311Y311YtaCtaT22B.1.177.330.003289
ORF1ab/nsp4311Y311delTAC---22B.1.20.000018
ORF1ab/nsp4311Y311YtaCtaT22B.1.3110.000549
ORF1ab/nsp4311Y311HTacCac22B.1.5170.000854
ORF1ab/nsp4311Y311YtaCtaT22B.1.5610.000794
ORF1ab/nsp4311Y311YtaCtaT22B.1.6370.000146
ORF1ab/nsp4311Y311YtaCtaT22C.140.008658
ORF1ab/nsp4311Y311YtaCtaT22D.20.00015
ORF1ab/nsp4311Y311YtaCtaT22P.1.120.000968
ORF1ab/nsp4311Y311YtaCtaT22P.1.40.001953
ORF1ab/nsp4311Y311HTacCac22P.1.70.000639
ORF1ab/nsp4311Y311LtACtTA110.055556
ORF1ab/nsp4311Y311XtaCtaA110.055556
ORF1ab/nsp4311Y311YtaCtaT11A.250.018182
ORF1ab/nsp4311Y311delTAC---11AD.20.000219
ORF1ab/nsp4311Y311HTacCac11AE.10.011364
ORF1ab/nsp4311Y311QTaCCaG11All0
ORF1ab/nsp4311Y311LtACtTA11All0
ORF1ab/nsp4311Y311StActCc11All0
ORF1ab/nsp4311Y311VTAcGTc11All0
ORF1ab/nsp4311Y311CtActGc11AY.1000.000046
ORF1ab/nsp4311Y311YtaCtaT11AY.1100.000113
ORF1ab/nsp4311Y311CtActGc11AY.1170.000085
ORF1ab/nsp4311Y311YtaCtaT11AY.1180.000063
ORF1ab/nsp4311Y311YtaCtaT11AY.140.000088
ORF1ab/nsp4311Y311CtActGc11AY.200.000039
ORF1ab/nsp4311Y311CtActGc11AY.230.00007
ORF1ab/nsp4311Y311HTacCac11AY.230.00007
ORF1ab/nsp4311Y311XtaCtaA11AY.240.000431
ORF1ab/nsp4311Y311CtActGc11AY.250.000006
ORF1ab/nsp4311Y311del2tACt--11AY.250.000006
ORF1ab/nsp4311Y311HTacCac11AY.290.000016
ORF1ab/nsp4311Y311CtActGc11AY.290.000016
ORF1ab/nsp4311Y311HTacCac11AY.340.000097
ORF1ab/nsp4311Y311YtaCtaT11AY.34.10.00051
ORF1ab/nsp4311Y311HTacCac11AY.350.000233
ORF1ab/nsp4311Y311YtaCtaT11AY.370.000316
ORF1ab/nsp4311Y311NTacAac11AY.40.000002
ORF1ab/nsp4311Y311FtActTc11AY.40.000002
ORF1ab/nsp4311Y311DTacGac11AY.40.000002
ORF1ab/nsp4311Y311YtaCtaT11AY.4.10.000737
ORF1ab/nsp4311Y311VTAcGTc11AY.4.20.000022
ORF1ab/nsp4311Y311delTAC---11AY.4.20.000022
ORF1ab/nsp4311Y311CtActGc11AY.4.20.000022
ORF1ab/nsp4311Y311CtActGc11AY.4.30.000842
ORF1ab/nsp4311Y311CtActGc11AY.400.000964
ORF1ab/nsp4311Y311YtaCtaT11AY.420.00004
ORF1ab/nsp4311Y311delTAC---11AY.440.000006
ORF1ab/nsp4311Y311NTacAac11AY.440.000006
ORF1ab/nsp4311Y311YtaCtaT11AY.460.000104
ORF1ab/nsp4311Y311YtaCtaT11AY.46.30.000934
ORF1ab/nsp4311Y311YtaCtaT11AY.46.60.000072
ORF1ab/nsp4311Y311delTAC---11AY.520.000814
ORF1ab/nsp4311Y311YtaCtaT11AY.60.000041
ORF1ab/nsp4311Y311delTAC---11AY.60.000041
ORF1ab/nsp4311Y311delTAC---11AY.600.000938
ORF1ab/nsp4311Y311CtActGc11AY.690.000187
ORF1ab/nsp4311Y311YtaCtaT11AY.7.10.000113
ORF1ab/nsp4311Y311delTAC---11AY.720.001361
ORF1ab/nsp4311Y311YtaCtaT11AY.860.00083
ORF1ab/nsp4311Y311HTacCac11AY.980.000079
ORF1ab/nsp4311Y311delTAC---11AY.990.001049
ORF1ab/nsp4311Y311delTAC---11AY.99.10.001553
ORF1ab/nsp4311Y311YtaCtaT11B0.000128
ORF1ab/nsp4311Y311CtActGc11B.10.000009
ORF1ab/nsp4311Y311XtaCtaA11B.10.000009
ORF1ab/nsp4311Y311delTAC---11B.10.000009
ORF1ab/nsp4311Y311ITACATA11B.1.10.000018
ORF1ab/nsp4311Y311CtActGc11B.1.10.000018
ORF1ab/nsp4311Y311delTAC---11B.1.1.1390.022727
ORF1ab/nsp4311Y311XtaCtaA11B.1.1.1530.001095
ORF1ab/nsp4311Y311CtActGc11B.1.1.1760.000439
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.2140.000055
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.2690.001353
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.3060.000438
ORF1ab/nsp4311Y311HTacCac11B.1.1.3150.008475
ORF1ab/nsp4311Y311CtActGc11B.1.1.3260.001761
ORF1ab/nsp4311Y311CtActGc11B.1.1.3330.001076
ORF1ab/nsp4311Y311HTacCac11B.1.1.3470.018182
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.3480.000796
ORF1ab/nsp4311Y311delTAC---11B.1.1.3610.045455
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.370.000193
ORF1ab/nsp4311Y311delTAC---11B.1.1.370.000193
ORF1ab/nsp4311Y311YtaCtaT11B.1.1.3720.000689
ORF1ab/nsp4311Y311delTAC---11B.1.1.390.00051
ORF1ab/nsp4311Y311HTacCac11B.1.1.3930.111111
ORF1ab/nsp4311Y311DTacGac11B.1.1.70.000001
ORF1ab/nsp4311Y311StActCc11B.1.1.70.000001
ORF1ab/nsp4311Y311delTAC---11B.1.1.700.000341
ORF1ab/nsp4311Y311YtaCtaT11B.1.1490.003425
ORF1ab/nsp4311Y311delTAC---11B.1.160.230.004831
ORF1ab/nsp4311Y311YtaCtaT11B.1.160.330.004425
ORF1ab/nsp4311Y311delTAC---11B.1.160.70.002079
ORF1ab/nsp4311Y311delTAC---11B.1.177.110.001698
ORF1ab/nsp4311Y311delTAC---11B.1.177.150.000631
ORF1ab/nsp4311Y311YtaCtaT11B.1.177.150.000631
ORF1ab/nsp4311Y311delTAC---11B.1.177.190.001431
ORF1ab/nsp4311Y311delTAC---11B.1.177.20.004545
ORF1ab/nsp4311Y311YtaCtaT11B.1.177.530.002392
ORF1ab/nsp4311Y311delTAC---11B.1.177.540.000606
ORF1ab/nsp4311Y311delTAC---11B.1.177.580.001332
ORF1ab/nsp4311Y311delTAC---11B.1.177.60.000977
ORF1ab/nsp4311Y311delTAC---11B.1.177.690.001484
ORF1ab/nsp4311Y311YtaCtaT11B.1.177.870.000728
ORF1ab/nsp4311Y311delTAC---11B.1.177.90.001332
ORF1ab/nsp4311Y311del1tAct-c11B.1.20.000009
ORF1ab/nsp4311Y311FtActTc11B.1.20.000009
ORF1ab/nsp4311Y311HTacCac11B.1.2210.000071
ORF1ab/nsp4311Y311YtaCtaT11B.1.258.110.000396
ORF1ab/nsp4311Y311HTacCac11B.1.3510.00003
ORF1ab/nsp4311Y311delTAC---11B.1.360.000146
ORF1ab/nsp4311Y311YtaCtaT11B.1.360.000146
ORF1ab/nsp4311Y311delTAC---11B.1.36.180.00042
ORF1ab/nsp4311Y311HTacCac11B.1.36.200.016949
ORF1ab/nsp4311Y311YtaCtaT11B.1.36.290.000517
ORF1ab/nsp4311Y311HTacCac11B.1.36.360.000602
ORF1ab/nsp4311Y311YtaCtaT11B.1.36.70.004
ORF1ab/nsp4311Y311YtaCtaT11B.1.3960.000706
ORF1ab/nsp4311Y311YtaCtaT11B.1.4000.000429
ORF1ab/nsp4311Y311HTacCac11B.1.4080.00369
ORF1ab/nsp4311Y311delTAC---11B.1.4150.014286
ORF1ab/nsp4311Y311HTacCac11B.1.4270.00005
ORF1ab/nsp4311Y311XtaCtaA11B.1.466.20.000391
ORF1ab/nsp4311Y311YtaCtaT11B.1.5110.034483
ORF1ab/nsp4311Y311HTacCac11B.1.5250.000113
ORF1ab/nsp4311Y311YtaCtaT11B.1.5680.001111
ORF1ab/nsp4311Y311YtaCtaT11B.1.5750.000303
ORF1ab/nsp4311Y311HTacCac11B.1.5810.009434
ORF1ab/nsp4311Y311YtaCtaT11B.1.5950.000261
ORF1ab/nsp4311Y311del2tACt--11B.1.5950.000261
ORF1ab/nsp4311Y311HTacCac11B.1.5950.000261
ORF1ab/nsp4311Y311CtActGc11B.1.5960.000087
ORF1ab/nsp4311Y311YtaCtaT11B.1.6090.000479
ORF1ab/nsp4311Y311HTacCac11B.1.6090.000479
ORF1ab/nsp4311Y311NTacAac11B.1.617.10.000129
ORF1ab/nsp4311Y311DTacGac11B.1.617.20.000004
ORF1ab/nsp4311Y311QTaCCaG11B.1.617.20.000004
ORF1ab/nsp4311Y311YtaCtaT11B.1.6190.000871
ORF1ab/nsp4311Y311YtaCtaT11B.1.6200.000946
ORF1ab/nsp4311Y311YtaCtaT11B.1.6210.000089
ORF1ab/nsp4311Y311delTAC---11B.150.017544
ORF1ab/nsp4311Y311CtActGc11B.60.00091
ORF1ab/nsp4311Y311YtaCtaT11B.6.80.008264
ORF1ab/nsp4311Y311YtaCtaT11C.160.00106
ORF1ab/nsp4311Y311delTAC---11C.170.055556
ORF1ab/nsp4311Y311ITACATA11C.350.000774
ORF1ab/nsp4311Y311CtActGc11C.370.000116
ORF1ab/nsp4311Y311HTacCac11D.20.000075
ORF1ab/nsp4311Y311delTAC---11P.1.100.000269
ORF1ab/nsp4311Y311HTacCac11P.1.140.000048
ORF1ab/nsp4311Y311YtaCtaT11P.1.170.000162
ORF1ab/nsp4311Y311YtaCtaT11P.1.80.004785
ORF1ab/nsp4311Y311delTAC---11Q.10.000126
ORF1ab/nsp4311Y311delTAC---11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.