CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 310 | E310E | E3073E | syn | gaA | gaG | 1094 | 1094 | 1 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310D | E3073D | nonsyn | gaA | gaC | 515 | 446 | 0.866019 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310D | E3073D | nonsyn | gaA | gaT | 515 | 69 | 0.133981 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310G | E3073G | nonsyn | gAa | gGa | 266 | 263 | 0.988722 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310G | E3073G | nonsyn | gAA | gGT | 266 | 2 | 0.0075188 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310G | E3073G | nonsyn | gAA | gGG | 266 | 1 | 0.0037594 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310del | E3073del | del | GAA | --- | 242 | 242 | 1 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310A | E3073A | nonsyn | gAa | gCa | 139 | 138 | 0.992806 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310A | E3073A | nonsyn | gAA | gCC | 139 | 1 | 0.00719424 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310V | E3073V | nonsyn | gAa | gTa | 52 | 52 | 1 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310X | E3073X | nonsyn | Gaa | Taa | 14 | 11 | 0.785714 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310X | E3073X | nonsyn | GAa | TGa | 14 | 2 | 0.142857 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310X | E3073X | nonsyn | GaA | TaG | 14 | 1 | 0.0714286 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310K | E3073K | nonsyn | Gaa | Aaa | 12 | 10 | 0.833333 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310K | E3073K | nonsyn | GaA | AaG | 12 | 2 | 0.166667 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310del2 | E3073del2 | del | gAA | g-- | 5 | 4 | 0.8 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310del2 | E3073del2 | del | GAa | --a | 5 | 1 | 0.2 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310del1 | E3073del1 | del | gaA | ga- | 4 | 2 | 0.5 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310del1 | E3073del1 | del | Gaa | -aa | 4 | 2 | 0.5 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310Q | E3073Q | nonsyn | Gaa | Caa | 3 | 3 | 1 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310R | E3073R | nonsyn | GAA | AGG | 2 | 1 | 0.5 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310R | E3073R | nonsyn | GAa | AGa | 2 | 1 | 0.5 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310Y | E3073Y | nonsyn | GaA | TaT | 1 | 1 | 1 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310C | E3073C | nonsyn | GAA | TGT | 1 | 1 | 1 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310W | E3073W | nonsyn | GAA | TGG | 1 | 1 | 1 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310N | E3073N | nonsyn | GaA | AaT | 1 | 1 | 1 | 9482-9484 |
ORF1ab/nsp4 | 310 | E310S | E3073S | nonsyn | GAa | TCa | 1 | 1 | 1 | 9482-9484 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1094 | 1094 | All | 0.000209 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 556 | 556 | B.1.1.7 | 0.000498 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 446 | 515 | All | 0.000085 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaT | 69 | 515 | All | 0.000013 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 386 | 386 | B.1.177.10 | 0.338894 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 263 | 266 | All | 0.00005 |
ORF1ab/nsp4 | 310 | E310G | gAA | gGT | 2 | 266 | All | 0 |
ORF1ab/nsp4 | 310 | E310G | gAA | gGG | 1 | 266 | All | 0 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 242 | 242 | All | 0.000046 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 138 | 139 | All | 0.000026 |
ORF1ab/nsp4 | 310 | E310A | gAA | gCC | 1 | 139 | All | 0 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 128 | 128 | B.1.1.7 | 0.000115 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 117 | 117 | B.1.617.2 | 0.000441 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 90 | 90 | AY.3 | 0.000895 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 60 | 67 | B.1.1.7 | 0.000054 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaT | 7 | 67 | B.1.1.7 | 0.000006 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 58 | 58 | AY.20 | 0.002254 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaT | 46 | 58 | B.1.177 | 0.000606 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 12 | 58 | B.1.177 | 0.000158 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 55 | 56 | AY.43 | 0.000244 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaT | 1 | 56 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 52 | 52 | All | 0.00001 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 38 | 38 | B.1.1.334 | 0.622951 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 34 | 34 | B.1.160 | 0.00106 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 21 | 21 | AY.39 | 0.000519 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 21 | 21 | B.1.177 | 0.000277 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 19 | 19 | B.1.1.417 | 0.051351 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 15 | 15 | AY.14 | 0.00132 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 14 | 15 | B.1 | 0.000128 |
ORF1ab/nsp4 | 310 | E310A | gAA | gCC | 1 | 15 | B.1 | 0.000009 |
ORF1ab/nsp4 | 310 | E310X | Gaa | Taa | 11 | 14 | All | 0.000002 |
ORF1ab/nsp4 | 310 | E310X | GAa | TGa | 2 | 14 | All | 0 |
ORF1ab/nsp4 | 310 | E310X | GaA | TaG | 1 | 14 | All | 0 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp4 | 310 | E310K | Gaa | Aaa | 10 | 12 | All | 0.000002 |
ORF1ab/nsp4 | 310 | E310K | GaA | AaG | 2 | 12 | All | 0 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 12 | 12 | AY.29 | 0.000189 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 11 | 11 | B.1.2 | 0.000097 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaT | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 9 | 9 | B.1 | 0.000082 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 9 | 9 | B.1.427 | 0.000454 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 5 | 7 | AY.44 | 0.00003 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaT | 2 | 7 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 7 | 7 | B.1.177 | 0.000092 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp4 | 310 | E310X | Gaa | Taa | 3 | 6 | 0.166667 | |
ORF1ab/nsp4 | 310 | E310X | GAa | TGa | 2 | 6 | 0.111111 | |
ORF1ab/nsp4 | 310 | E310X | GaA | TaG | 1 | 6 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 6 | 6 | B.4.6 | 0.1 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 3 | 5 | 0.166667 | |
ORF1ab/nsp4 | 310 | E310G | gAA | gGT | 1 | 5 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310G | gAA | gGG | 1 | 5 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310del2 | gAA | g-- | 4 | 5 | All | 0.000001 |
ORF1ab/nsp4 | 310 | E310del2 | GAa | --a | 1 | 5 | All | 0 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 5 | 5 | AY.19 | 0.005701 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 4 | 5 | AY.4 | 0.000006 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaT | 1 | 5 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp4 | 310 | E310del1 | Gaa | -aa | 2 | 4 | All | 0 |
ORF1ab/nsp4 | 310 | E310del1 | gaA | ga- | 2 | 4 | All | 0 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 4 | 4 | B.1.551 | 0.005161 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp4 | 310 | E310Q | Gaa | Caa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 310 | E310G | gAA | gGT | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 3 | 3 | AY.5.4 | 0.00083 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 3 | 3 | AY.78 | 0.004622 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 3 | 3 | B | 0.000383 |
ORF1ab/nsp4 | 310 | E310K | Gaa | Aaa | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp4 | 310 | E310R | GAa | AGa | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310K | GaA | AaG | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310K | Gaa | Aaa | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310R | GAA | AGG | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp4 | 310 | E310R | GAA | AGG | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 310 | E310R | GAa | AGa | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 2 | 2 | B | 0.000256 |
ORF1ab/nsp4 | 310 | E310X | Gaa | Taa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 310 | E310K | GaA | AaG | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 310 | E310K | Gaa | Aaa | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp4 | 310 | E310X | Gaa | Taa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 310 | E310del2 | gAA | g-- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 310 | E310del2 | GAa | --a | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 2 | 2 | B.1.558 | 0.009132 |
ORF1ab/nsp4 | 310 | E310K | Gaa | Aaa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 2 | 2 | B.61 | 0.011494 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp4 | 310 | E310Y | GaA | TaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310D | gaA | gaT | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310W | GAA | TGG | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310C | GAA | TGT | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310S | GAa | TCa | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 310 | E310N | GaA | AaT | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 310 | E310W | GAA | TGG | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 310 | E310S | GAa | TCa | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 310 | E310C | GAA | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 310 | E310Y | GaA | TaT | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 310 | E310K | Gaa | Aaa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 310 | E310X | Gaa | Taa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp4 | 310 | E310K | Gaa | Aaa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 310 | E310Q | Gaa | Caa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 310 | E310K | Gaa | Aaa | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 310 | E310Q | Gaa | Caa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 310 | E310del1 | gaA | ga- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.1.139 | 0.022727 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp4 | 310 | E310del1 | Gaa | -aa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp4 | 310 | E310del2 | gAA | g-- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 310 | E310Q | Gaa | Caa | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp4 | 310 | E310del2 | gAA | g-- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp4 | 310 | E310X | Gaa | Taa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 310 | E310V | gAa | gTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 310 | E310N | GaA | AaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 310 | E310X | Gaa | Taa | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp4 | 310 | E310X | Gaa | Taa | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp4 | 310 | E310del2 | gAA | g-- | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp4 | 310 | E310del1 | Gaa | -aa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 310 | E310E | gaA | gaG | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 310 | E310D | gaA | gaC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp4 | 310 | E310A | gAa | gCa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp4 | 310 | E310G | gAa | gGa | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp4 | 310 | E310del | GAA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 310 | E310del1 | gaA | ga- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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