CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 308 | F308Y | F3071Y | nonsyn | tTt | tAt | 5476 | 5476 | 1 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308del | F3071del | del | TTT | --- | 242 | 242 | 1 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308L | F3071L | nonsyn | Ttt | Ctt | 76 | 55 | 0.723684 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308L | F3071L | nonsyn | ttT | ttG | 76 | 13 | 0.171053 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308L | F3071L | nonsyn | ttT | ttA | 76 | 7 | 0.0921053 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308L | F3071L | nonsyn | TtT | CtC | 76 | 1 | 0.0131579 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308F | F3071F | syn | ttT | ttC | 44 | 44 | 1 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308T | F3071T | nonsyn | TTt | ACt | 15 | 15 | 1 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308V | F3071V | nonsyn | Ttt | Gtt | 14 | 14 | 1 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308I | F3071I | nonsyn | Ttt | Att | 13 | 12 | 0.923077 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308I | F3071I | nonsyn | TtT | AtA | 13 | 1 | 0.0769231 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308S | F3071S | nonsyn | tTt | tCt | 11 | 11 | 1 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308del1 | F3071del1 | del | Ttt | -tt | 10 | 9 | 0.9 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308del1 | F3071del1 | del | ttT | tt- | 10 | 1 | 0.1 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308C | F3071C | nonsyn | tTt | tGt | 8 | 8 | 1 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308del2 | F3071del2 | del | tTT | t-- | 5 | 3 | 0.6 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308del2 | F3071del2 | del | TTt | --t | 5 | 2 | 0.4 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308G | F3071G | nonsyn | TTt | GGt | 2 | 2 | 1 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308P | F3071P | nonsyn | TTt | CCt | 1 | 1 | 1 | 9476-9478 |
ORF1ab/nsp4 | 308 | F308N | F3071N | nonsyn | TTt | AAt | 1 | 1 | 1 | 9476-9478 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 5476 | 5476 | All | 0.001047 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1934 | 1934 | A.2.5 | 0.96507 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1475 | 1475 | A.2 | 0.976175 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 623 | 623 | A.2.5.2 | 0.97956 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 586 | 586 | A.2.2 | 0.989865 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 295 | 295 | A.2.4 | 0.993266 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 242 | 242 | All | 0.000046 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 207 | 207 | A.2.5.1 | 0.995192 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 205 | 205 | A.2.3 | 0.971564 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 132 | 132 | B.1.1.7 | 0.000118 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 90 | 90 | A.2.5.3 | 0.927835 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 55 | 76 | All | 0.000011 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 13 | 76 | All | 0.000002 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttA | 7 | 76 | All | 0.000001 |
ORF1ab/nsp4 | 308 | F308L | TtT | CtC | 1 | 76 | All | 0 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 44 | 44 | All | 0.000008 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 19 | 19 | B.1.1.7 | 0.000017 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp4 | 308 | F308T | TTt | ACt | 15 | 15 | All | 0.000003 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 14 | 14 | All | 0.000003 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 14 | 14 | B | 0.001789 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 12 | 13 | All | 0.000002 |
ORF1ab/nsp4 | 308 | F308I | TtT | AtA | 1 | 13 | All | 0 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp4 | 308 | F308S | tTt | tCt | 11 | 11 | All | 0.000002 |
ORF1ab/nsp4 | 308 | F308del1 | Ttt | -tt | 9 | 10 | All | 0.000002 |
ORF1ab/nsp4 | 308 | F308del1 | ttT | tt- | 1 | 10 | All | 0 |
ORF1ab/nsp4 | 308 | F308C | tTt | tGt | 8 | 8 | All | 0.000002 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 5 | 5 | A | 0.001935 |
ORF1ab/nsp4 | 308 | F308del2 | tTT | t-- | 3 | 5 | All | 0.000001 |
ORF1ab/nsp4 | 308 | F308del2 | TTt | --t | 2 | 5 | All | 0 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 308 | F308del1 | Ttt | -tt | 3 | 4 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 308 | F308del1 | ttT | tt- | 1 | 4 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttA | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttA | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp4 | 308 | F308T | TTt | ACt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 308 | F308del2 | TTt | --t | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 308 | F308del2 | tTT | t-- | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 2 | 3 | B.1.351 | 0.000059 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 1 | 3 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 308 | F308T | TTt | ACt | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 308 | F308I | TtT | AtA | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 308 | F308G | TTt | GGt | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 308 | F308C | tTt | tGt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 308 | F308T | TTt | ACt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 308 | F308S | tTt | tCt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp4 | 308 | F308T | TTt | ACt | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 308 | F308del1 | Ttt | -tt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp4 | 308 | F308S | tTt | tCt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 2 | 2 | B.1.157 | 0.00597 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 2 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttA | 1 | 2 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 308 | F308S | tTt | tCt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 308 | F308N | TTt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 308 | F308P | TTt | CCt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 308 | F308C | tTt | tGt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 308 | F308T | TTt | ACt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 308 | F308del1 | Ttt | -tt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 308 | F308del2 | tTT | t-- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 308 | F308S | tTt | tCt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 308 | F308T | TTt | ACt | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 308 | F308T | TTt | ACt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp4 | 308 | F308S | tTt | tCt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp4 | 308 | F308S | tTt | tCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 308 | F308T | TTt | ACt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 308 | F308del2 | tTT | t-- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 308 | F308T | TTt | ACt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 308 | F308G | TTt | GGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 308 | F308C | tTt | tGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 308 | F308N | TTt | AAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 308 | F308C | tTt | tGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp4 | 308 | F308S | tTt | tCt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp4 | 308 | F308C | tTt | tGt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 308 | F308C | tTt | tGt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 308 | F308I | Ttt | Att | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 308 | F308S | tTt | tCt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 308 | F308del1 | Ttt | -tt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp4 | 308 | F308G | TTt | GGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 308 | F308C | tTt | tGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 308 | F308del1 | Ttt | -tt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 308 | F308P | TTt | CCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttA | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttA | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 308 | F308L | TtT | CtC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 308 | F308Y | tTt | tAt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 308 | F308del1 | Ttt | -tt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 308 | F308V | Ttt | Gtt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 308 | F308L | Ttt | Ctt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 308 | F308L | ttT | ttG | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp4 | 308 | F308del | TTT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 308 | F308F | ttT | ttC | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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