CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 307 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4307A307delA3070deldelGCT---23023019473-9475

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4307A307delGCT---230230All0.000044
ORF1ab/nsp4307A307delGCT---126126B.1.1.70.000113
ORF1ab/nsp4307A307delGCT---2323B.1.1770.000303
ORF1ab/nsp4307A307delGCT---1717AY.40.000026
ORF1ab/nsp4307A307delGCT---66AY.4.50.000645
ORF1ab/nsp4307A307delGCT---33AY.430.000013
ORF1ab/nsp4307A307delGCT---33B.1.177.40.000633
ORF1ab/nsp4307A307delGCT---33B.1.177.870.002183
ORF1ab/nsp4307A307delGCT---33B.1.617.20.000011
ORF1ab/nsp4307A307delGCT---22AY.1110.000366
ORF1ab/nsp4307A307delGCT---22AY.1200.000074
ORF1ab/nsp4307A307delGCT---22AY.190.002281
ORF1ab/nsp4307A307delGCT---22AY.46.20.001271
ORF1ab/nsp4307A307delGCT---22AY.90.000135
ORF1ab/nsp4307A307delGCT---22B.1.1.3110.000716
ORF1ab/nsp4307A307delGCT---22B.1.1.3120.003824
ORF1ab/nsp4307A307delGCT---22B.1.177.180.00232
ORF1ab/nsp4307A307delGCT---22B.1.20.000018
ORF1ab/nsp4307A307delGCT---11AD.20.000219
ORF1ab/nsp4307A307delGCT---11AY.520.000814
ORF1ab/nsp4307A307delGCT---11AY.60.000041
ORF1ab/nsp4307A307delGCT---11AY.600.000938
ORF1ab/nsp4307A307delGCT---11AY.99.10.001553
ORF1ab/nsp4307A307delGCT---11B.1.10.000018
ORF1ab/nsp4307A307delGCT---11B.1.1.3610.045455
ORF1ab/nsp4307A307delGCT---11B.1.1.370.000193
ORF1ab/nsp4307A307delGCT---11B.1.1.390.00051
ORF1ab/nsp4307A307delGCT---11B.1.1.700.000341
ORF1ab/nsp4307A307delGCT---11B.1.160.230.004831
ORF1ab/nsp4307A307delGCT---11B.1.160.70.002079
ORF1ab/nsp4307A307delGCT---11B.1.177.110.001698
ORF1ab/nsp4307A307delGCT---11B.1.177.150.000631
ORF1ab/nsp4307A307delGCT---11B.1.177.160.000664
ORF1ab/nsp4307A307delGCT---11B.1.177.190.001431
ORF1ab/nsp4307A307delGCT---11B.1.177.20.004545
ORF1ab/nsp4307A307delGCT---11B.1.177.540.000606
ORF1ab/nsp4307A307delGCT---11B.1.177.580.001332
ORF1ab/nsp4307A307delGCT---11B.1.177.60.000977
ORF1ab/nsp4307A307delGCT---11B.1.177.690.001484
ORF1ab/nsp4307A307delGCT---11B.1.177.90.001332
ORF1ab/nsp4307A307delGCT---11B.1.360.000146
ORF1ab/nsp4307A307delGCT---11B.1.36.180.00042
ORF1ab/nsp4307A307delGCT---11B.150.017544
ORF1ab/nsp4307A307delGCT---11P.10.000016
ORF1ab/nsp4307A307delGCT---11P.1.100.000269
ORF1ab/nsp4307A307delGCT---11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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