CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 307 | A307V | A3070V | nonsyn | gCt | gTt | 9044 | 9044 | 1 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307T | A3070T | nonsyn | Gct | Act | 2208 | 2207 | 0.999547 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307T | A3070T | nonsyn | GcT | AcC | 2208 | 1 | 0.000452899 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307del | A3070del | del | GCT | --- | 230 | 230 | 1 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307S | A3070S | nonsyn | Gct | Tct | 187 | 184 | 0.983957 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307S | A3070S | nonsyn | GcT | TcC | 187 | 1 | 0.00534759 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307S | A3070S | nonsyn | GCt | AGt | 187 | 1 | 0.00534759 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307S | A3070S | nonsyn | GCT | AGC | 187 | 1 | 0.00534759 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307A | A3070A | syn | gcT | gcC | 169 | 130 | 0.769231 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307A | A3070A | syn | gcT | gcG | 169 | 25 | 0.147929 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307A | A3070A | syn | gcT | gcA | 169 | 14 | 0.0828402 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307del1 | A3070del1 | del | gcT | gc- | 31 | 29 | 0.935484 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307del1 | A3070del1 | del | Gct | -ct | 31 | 2 | 0.0645161 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307D | A3070D | nonsyn | gCt | gAt | 10 | 10 | 1 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307del2 | A3070del2 | del | gCT | g-- | 7 | 7 | 1 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307G | A3070G | nonsyn | gCt | gGt | 7 | 6 | 0.857143 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307G | A3070G | nonsyn | gCT | gGC | 7 | 1 | 0.142857 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307K | A3070K | nonsyn | GCT | AAA | 3 | 3 | 1 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307P | A3070P | nonsyn | Gct | Cct | 2 | 2 | 1 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307L | A3070L | nonsyn | GCt | CTt | 2 | 1 | 0.5 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307L | A3070L | nonsyn | GCT | TTG | 2 | 1 | 0.5 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307E | A3070E | nonsyn | gCT | gAA | 1 | 1 | 1 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307I | A3070I | nonsyn | GCT | ATC | 1 | 1 | 1 | 9473-9475 |
ORF1ab/nsp4 | 307 | A307R | A3070R | nonsyn | GCt | CGt | 1 | 1 | 1 | 9473-9475 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 9044 | 9044 | All | 0.00173 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2246 | 2246 | AY.4 | 0.003496 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2207 | 2208 | All | 0.000422 |
ORF1ab/nsp4 | 307 | A307T | GcT | AcC | 1 | 2208 | All | 0 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1733 | 1733 | AY.101 | 0.849926 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1132 | 1132 | AY.39.1 | 0.044842 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 637 | 637 | B.1.1.7 | 0.00057 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 600 | 600 | AY.44 | 0.003652 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 565 | 565 | B.1.617.2 | 0.002127 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 341 | 341 | AY.3 | 0.003392 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 266 | 266 | AY.103 | 0.001652 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 256 | 256 | B.1.2 | 0.002254 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 249 | 249 | AY.25 | 0.001498 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 230 | 230 | All | 0.000044 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 211 | 211 | AY.43 | 0.000935 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 202 | 202 | AY.39 | 0.004992 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 184 | 187 | All | 0.000035 |
ORF1ab/nsp4 | 307 | A307S | GcT | TcC | 1 | 187 | All | 0 |
ORF1ab/nsp4 | 307 | A307S | GCt | AGt | 1 | 187 | All | 0 |
ORF1ab/nsp4 | 307 | A307S | GCT | AGC | 1 | 187 | All | 0 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 130 | 169 | All | 0.000025 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 25 | 169 | All | 0.000005 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcA | 14 | 169 | All | 0.000003 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 130 | 130 | B.1.177 | 0.001712 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 126 | 126 | B.1.1.7 | 0.000113 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 121 | 121 | AY.4 | 0.000188 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 120 | 120 | B.1 | 0.001099 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 115 | 115 | AY.119 | 0.00406 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 114 | 114 | B.1.1.7 | 0.000102 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 109 | 109 | B.1.1 | 0.001977 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 101 | 101 | AY.20 | 0.003925 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 97 | 97 | AY.33 | 0.006477 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 76 | 76 | B.1.160 | 0.00237 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 69 | 69 | AY.99.2 | 0.006359 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 61 | 61 | AY.102 | 0.001617 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 61 | 61 | AY.4.2 | 0.001323 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 53 | 53 | AY.114 | 0.012249 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 51 | 51 | AY.100 | 0.002346 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 51 | 51 | AY.6 | 0.002098 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 50 | 50 | AY.75 | 0.002801 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 49 | 49 | AY.29 | 0.000773 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 47 | 47 | AY.44 | 0.000286 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 42 | 42 | B.1.1.1 | 0.013721 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 38 | 38 | B.1.617.2 | 0.000143 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 28 | 32 | B.1.1.7 | 0.000025 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcA | 3 | 32 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 1 | 32 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 29 | 31 | All | 0.000006 |
ORF1ab/nsp4 | 307 | A307del1 | Gct | -ct | 2 | 31 | All | 0 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 29 | 29 | AY.118 | 0.001817 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 29 | 29 | B.1.1.33 | 0.012205 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 28 | 28 | AY.43 | 0.000124 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 26 | 26 | B.1.1.519 | 0.001032 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 24 | 24 | B.1.1 | 0.000435 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 24 | 24 | B.1.1.369 | 0.01071 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 24 | 24 | B.1.221 | 0.001705 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 23 | 23 | B.1.177 | 0.000303 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 23 | 23 | B.1.575 | 0.006978 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 22 | 22 | AY.5 | 0.000454 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 22 | 22 | B.1.234 | 0.002903 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 21 | 21 | AY.120.1 | 0.006742 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 21 | 21 | AY.67 | 0.009749 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 20 | 20 | B.1.243 | 0.001392 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 20 | 20 | B.1.526 | 0.00047 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 19 | 19 | AY.42 | 0.000764 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 19 | 19 | B.1.596 | 0.001656 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 19 | 19 | W.4 | 0.025676 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 18 | 18 | D.2 | 0.001351 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 17 | 17 | AY.106 | 0.005693 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 17 | 17 | AY.4 | 0.000026 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 17 | 17 | AY.4.5 | 0.001827 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 17 | 17 | B.1.621 | 0.001505 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 16 | 16 | B.1.160 | 0.000499 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 15 | 15 | AY.117 | 0.001268 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 15 | 15 | B.1.1.519 | 0.000596 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 14 | 14 | AY.3 | 0.000139 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 14 | 14 | AY.46.6 | 0.001011 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 14 | 14 | B | 0.001789 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 13 | 13 | B.1 | 0.000119 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 12 | 13 | B.1 | 0.00011 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 1 | 13 | B.1 | 0.000009 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 13 | 13 | B.1.167 | 0.101562 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 12 | 12 | AY.23 | 0.000837 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 12 | 12 | AY.3.1 | 0.001023 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 12 | 12 | B.1.429 | 0.000282 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 10 | 11 | AY.4 | 0.000016 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 1 | 11 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp4 | 307 | A307D | gCt | gAt | 10 | 10 | All | 0.000002 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 10 | 10 | AY.14 | 0.00088 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 10 | 10 | AY.26 | 0.000283 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 10 | 10 | AY.39.1 | 0.000396 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 10 | 10 | B.1.497 | 0.003148 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 9 | 9 | B.1.1.28 | 0.002801 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 9 | 9 | B.1.1.434 | 0.003137 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 8 | 8 | B.1.177.21 | 0.000612 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 8 | 8 | B.1.36 | 0.001167 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 8 | 8 | B.40 | 0.002914 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 8 | 8 | D.2 | 0.0006 |
ORF1ab/nsp4 | 307 | A307del2 | gCT | g-- | 7 | 7 | All | 0.000001 |
ORF1ab/nsp4 | 307 | A307G | gCt | gGt | 6 | 7 | All | 0.000001 |
ORF1ab/nsp4 | 307 | A307G | gCT | gGC | 1 | 7 | All | 0 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 7 | 7 | AY.110 | 0.000789 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 6 | 7 | AY.43 | 0.000027 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 1 | 7 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 7 | 7 | AY.46 | 0.000729 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 7 | 7 | AY.98 | 0.000553 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 7 | 7 | B.1.177.17 | 0.005747 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 7 | 7 | B.1.3 | 0.018325 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 7 | 7 | B.1.486 | 0.777778 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 6 | 6 | AY.29.1 | 0.001323 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 6 | 6 | AY.35 | 0.001398 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 3 | 6 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 2 | 6 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcA | 1 | 6 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 6 | 6 | B.1.177.32 | 0.008097 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 6 | 6 | B.1.177.73 | 0.003398 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 6 | 6 | B.1.177.77 | 0.004357 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 5 | 6 | B.1.617.2 | 0.000019 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcA | 1 | 6 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 6 | 6 | B.1.623 | 0.003219 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 4 | 5 | AY.25 | 0.000024 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 1 | 5 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 5 | 5 | AY.74 | 0.000578 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 5 | 5 | AY.91 | 0.003652 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 5 | 5 | B.1.1.25 | 0.002843 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 5 | 5 | B.1.1.432 | 0.006329 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 4 | 5 | B.1.2 | 0.000035 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 1 | 5 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 4 | 4 | AY.108 | 0.00441 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 2 | 4 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 2 | 4 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | AY.62 | 0.001743 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | AY.96 | 0.008299 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | B.1.1.369 | 0.001785 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | B.1.1.385 | 0.017857 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | B.1.1.521 | 0.02139 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 3 | 4 | B.1.2 | 0.000026 |
ORF1ab/nsp4 | 307 | A307S | GcT | TcC | 1 | 4 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | B.1.201 | 0.022727 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 3 | 4 | B.1.243 | 0.000209 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 1 | 4 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcA | 3 | 4 | B.1.351 | 0.000089 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 4 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 4 | 4 | B.1.84 | 0.083333 |
ORF1ab/nsp4 | 307 | A307S | GCT | AGC | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 307 | A307S | GCt | AGt | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 307 | A307K | GCT | AAA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | AY.48 | 0.001395 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | AY.84 | 0.001312 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcA | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.1.382 | 0.107143 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 3 | 3 | B.1.1.397 | 0.006757 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.1.8 | 0.010753 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.13 | 0.007126 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 3 | 3 | B.1.177.87 | 0.002183 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 3 | 3 | B.1.214 | 0.010989 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.400 | 0.001287 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | P.1.4 | 0.00293 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp4 | 307 | A307T | GcT | AcC | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 307 | A307G | gCt | gGt | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 307 | A307G | gCT | gGC | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | A | 0.000774 |
ORF1ab/nsp4 | 307 | A307P | Gct | Cct | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 307 | A307L | GCt | CTt | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 307 | A307L | GCT | TTG | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp4 | 307 | A307D | gCt | gAt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.1.178 | 0.083333 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.1.277 | 0.001517 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.1.286 | 0.005797 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp4 | 307 | A307del2 | gCT | g-- | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.110.1 | 0.2 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.160.16 | 0.001859 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.160.9 | 0.014388 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.177.38 | 0.020833 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | B.1.218 | 0.010309 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.250 | 0.028986 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.258.16 | 0.003273 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.280 | 0.014286 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | B.1.36.26 | 0.005714 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.391 | 0.002255 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.409 | 0.001563 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.555 | 0.044444 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.10 | 0.016529 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.3.1 | 0.003317 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 307 | A307E | gCT | gAA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 307 | A307I | GCT | ATC | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 307 | A307R | GCt | CGt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp4 | 307 | A307K | GCT | AAA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 307 | A307K | GCT | AAA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 307 | A307R | GCt | CGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 307 | A307del2 | gCT | g-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 307 | A307G | gCt | gGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 307 | A307G | gCt | gGt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 307 | A307del2 | gCT | g-- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp4 | 307 | A307del2 | gCT | g-- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp4 | 307 | A307D | gCt | gAt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 307 | A307G | gCt | gGt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 307 | A307D | gCt | gAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 307 | A307I | GCT | ATC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp4 | 307 | A307P | Gct | Cct | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.169 | 0.018182 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.208 | 0.012195 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 307 | A307D | gCt | gAt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp4 | 307 | A307del1 | Gct | -ct | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.1.299 | 0.012195 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.419 | 0.007407 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.440 | 0.011765 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.447 | 0.035714 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.458 | 0.041667 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.55 | 0.012987 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp4 | 307 | A307G | gCt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 307 | A307D | gCt | gAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.103 | 0.019231 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.108 | 0.005814 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.12 | 0.008 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.159 | 0.012195 |
ORF1ab/nsp4 | 307 | A307D | gCt | gAt | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp4 | 307 | A307del1 | Gct | -ct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 307 | A307del2 | gCT | g-- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.177.2 | 0.004545 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.3 | 0.007634 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.68 | 0.015152 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.182 | 0.007246 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp4 | 307 | A307D | gCt | gAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.211 | 0.025 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.220 | 0.01087 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.221.2 | 0.004016 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.251 | 0.021739 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.254 | 0.025 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp4 | 307 | A307D | gCt | gAt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.258.24 | 0.010753 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.355 | 0.011111 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcA | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.36.27 | 0.000763 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp4 | 307 | A307D | gCt | gAt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.554 | 0.004405 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.605 | 0.005952 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.606 | 0.006024 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.607 | 0.052632 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 307 | A307K | GCT | AAA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 307 | A307del2 | gCT | g-- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 307 | A307E | gCT | gAA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 307 | A307L | GCt | CTt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 307 | A307G | gCt | gGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.1.97 | 0.025641 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.38 | 0.02381 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcA | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcA | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp4 | 307 | A307L | GCT | TTG | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 307 | A307S | Gct | Tct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 307 | A307del1 | gcT | gc- | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 307 | A307T | Gct | Act | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp4 | 307 | A307P | Gct | Cct | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp4 | 307 | A307A | gcT | gcC | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp4 | 307 | A307V | gCt | gTt | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp4 | 307 | A307del | GCT | --- | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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