CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 300

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4300Y300YY3063YsyntaTtaC3726372619452-9454
ORF1ab/nsp4300Y300SY3063SnonsyntAttCt27727719452-9454
ORF1ab/nsp4300Y300CY3063CnonsyntAttGt969619452-9454
ORF1ab/nsp4300Y300HY3063HnonsynTatCat67660.9850759452-9454
ORF1ab/nsp4300Y300HY3063HnonsynTaTCaC6710.01492549452-9454
ORF1ab/nsp4300Y300delY3063deldelTAT---595919452-9454
ORF1ab/nsp4300Y300NY3063NnonsynTatAat464619452-9454
ORF1ab/nsp4300Y300del1Y3063del1deltaTta-6619452-9454
ORF1ab/nsp4300Y300FY3063FnonsyntAttTt6619452-9454
ORF1ab/nsp4300Y300XY3063XnonsyntaTtaA540.89452-9454
ORF1ab/nsp4300Y300XY3063XnonsyntaTtaG510.29452-9454
ORF1ab/nsp4300Y300KY3063KnonsynTaTAaA2219452-9454
ORF1ab/nsp4300Y300DY3063DnonsynTatGat1119452-9454

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4300Y300YtaTtaC37263726All0.000713
ORF1ab/nsp4300Y300YtaTtaC17001700B.1.1.70.001522
ORF1ab/nsp4300Y300YtaTtaC16851685AY.40.002623
ORF1ab/nsp4300Y300StAttCt277277All0.000053
ORF1ab/nsp4300Y300StAttCt256256L.30.907801
ORF1ab/nsp4300Y300CtAttGt9696All0.000018
ORF1ab/nsp4300Y300YtaTtaC9393B.1.617.20.00035
ORF1ab/nsp4300Y300HTatCat6667All0.000013
ORF1ab/nsp4300Y300HTaTCaC167All0
ORF1ab/nsp4300Y300delTAT---5959All0.000011
ORF1ab/nsp4300Y300CtAttGt5858P.1.10.018424
ORF1ab/nsp4300Y300NTatAat4646All0.000009
ORF1ab/nsp4300Y300NTatAat4545B.1.1.70.00004
ORF1ab/nsp4300Y300YtaTtaC3737AY.1020.000981
ORF1ab/nsp4300Y300delTAT---3131B.1.1.70.000028
ORF1ab/nsp4300Y300YtaTtaC2929B.1.1110.034078
ORF1ab/nsp4300Y300HTatCat2525AY.1030.000155
ORF1ab/nsp4300Y300HTatCat1919B.1.1.70.000017
ORF1ab/nsp4300Y300YtaTtaC1818B.1.10.000327
ORF1ab/nsp4300Y300YtaTtaC1616AY.420.000644
ORF1ab/nsp4300Y300YtaTtaC1616AY.860.013278
ORF1ab/nsp4300Y300YtaTtaC1414AY.440.000085
ORF1ab/nsp4300Y300YtaTtaC1313AY.50.000268
ORF1ab/nsp4300Y300YtaTtaC1313B.1.5250.001471
ORF1ab/nsp4300Y300YtaTtaC1111B.10.000101
ORF1ab/nsp4300Y300YtaTtaC99B.1.177.50.01118
ORF1ab/nsp4300Y300YtaTtaC77AY.430.000031
ORF1ab/nsp4300Y300delTAT---77B.1.1770.000092
ORF1ab/nsp4300Y300CtAttGt77P.10.00011
ORF1ab/nsp4300Y300StAttCt77R.10.00063
ORF1ab/nsp4300Y300del1taTta-66All0.000001
ORF1ab/nsp4300Y300FtAttTt66All0.000001
ORF1ab/nsp4300Y300HTatCat66AY.440.000037
ORF1ab/nsp4300Y300XtaTtaA45All0.000001
ORF1ab/nsp4300Y300XtaTtaG15All0
ORF1ab/nsp4300Y300YtaTtaC55AY.34.10.00255
ORF1ab/nsp4300Y300StAttCt55B.10.000046
ORF1ab/nsp4300Y300HTatCat45B.1.617.20.000015
ORF1ab/nsp4300Y300HTaTCaC15B.1.617.20.000004
ORF1ab/nsp4300Y300YtaTtaC44AY.260.000113
ORF1ab/nsp4300Y300YtaTtaC44AY.390.000099
ORF1ab/nsp4300Y300YtaTtaC44AY.46.40.000658
ORF1ab/nsp4300Y300CtAttGt44B.1.1.70.000004
ORF1ab/nsp4300Y300YtaTtaC33AY.1030.000019
ORF1ab/nsp4300Y300delTAT---33AY.40.000005
ORF1ab/nsp4300Y300delTAT---33AY.4.50.000322
ORF1ab/nsp4300Y300StAttCt33B.1.10.000054
ORF1ab/nsp4300Y300StAttCt33B.1.1.100.003344
ORF1ab/nsp4300Y300YtaTtaC33B.1.360.000438
ORF1ab/nsp4300Y300CtAttGt33B.1.5260.000071
ORF1ab/nsp4300Y300YtaTtaC33C.36.30.001702
ORF1ab/nsp4300Y300YtaTtaC33C.370.000348
ORF1ab/nsp4300Y300YtaTtaC33P.10.000047
ORF1ab/nsp4300Y300KTaTAaA22All0
ORF1ab/nsp4300Y300delTAT---22AY.1110.000366
ORF1ab/nsp4300Y300CtAttGt22AY.1190.000071
ORF1ab/nsp4300Y300YtaTtaC22AY.250.000012
ORF1ab/nsp4300Y300HTatCat22AY.30.00002
ORF1ab/nsp4300Y300CtAttGt22AY.40.000003
ORF1ab/nsp4300Y300HTatCat22AY.40.000003
ORF1ab/nsp4300Y300CtAttGt22AY.440.000012
ORF1ab/nsp4300Y300YtaTtaC22AY.450.000243
ORF1ab/nsp4300Y300YtaTtaC22AY.460.000208
ORF1ab/nsp4300Y300del1taTta-22AY.46.20.001271
ORF1ab/nsp4300Y300CtAttGt22B.1.1.2140.000111
ORF1ab/nsp4300Y300HTatCat22B.1.1.5190.000079
ORF1ab/nsp4300Y300CtAttGt22B.1.4290.000047
ORF1ab/nsp4300Y300YtaTtaC22B.1.5260.000047
ORF1ab/nsp4300Y300CtAttGt22B.1.617.20.000008
ORF1ab/nsp4300Y300YtaTtaC22R.10.00018
ORF1ab/nsp4300Y300DTatGat110.055556
ORF1ab/nsp4300Y300DTatGat11All0
ORF1ab/nsp4300Y300XtaTtaA11AY.1020.000027
ORF1ab/nsp4300Y300YtaTtaC11AY.116.10.000311
ORF1ab/nsp4300Y300KTaTAaA11AY.1170.000085
ORF1ab/nsp4300Y300HTatCat11AY.1190.000035
ORF1ab/nsp4300Y300YtaTtaC11AY.1200.000037
ORF1ab/nsp4300Y300delTAT---11AY.1200.000037
ORF1ab/nsp4300Y300HTatCat11AY.1200.000037
ORF1ab/nsp4300Y300CtAttGt11AY.130.000161
ORF1ab/nsp4300Y300YtaTtaC11AY.200.000039
ORF1ab/nsp4300Y300YtaTtaC11AY.230.00007
ORF1ab/nsp4300Y300CtAttGt11AY.250.000006
ORF1ab/nsp4300Y300HTatCat11AY.250.000006
ORF1ab/nsp4300Y300XtaTtaA11AY.260.000028
ORF1ab/nsp4300Y300CtAttGt11AY.30.00001
ORF1ab/nsp4300Y300delTAT---11AY.360.000148
ORF1ab/nsp4300Y300YtaTtaC11AY.380.000499
ORF1ab/nsp4300Y300del1taTta-11AY.40.000002
ORF1ab/nsp4300Y300FtAttTt11AY.40.000002
ORF1ab/nsp4300Y300XtaTtaA11AY.40.000002
ORF1ab/nsp4300Y300CtAttGt11AY.4.50.000107
ORF1ab/nsp4300Y300delTAT---11AY.430.000004
ORF1ab/nsp4300Y300CtAttGt11AY.430.000004
ORF1ab/nsp4300Y300FtAttTt11AY.440.000006
ORF1ab/nsp4300Y300YtaTtaC11AY.480.000465
ORF1ab/nsp4300Y300HTatCat11AY.480.000465
ORF1ab/nsp4300Y300CtAttGt11AY.610.000105
ORF1ab/nsp4300Y300YtaTtaC11AY.750.000056
ORF1ab/nsp4300Y300YtaTtaC11AY.880.000884
ORF1ab/nsp4300Y300delTAT---11AY.90.000068
ORF1ab/nsp4300Y300del1taTta-11B.1.10.000018
ORF1ab/nsp4300Y300YtaTtaC11B.1.1.1530.001095
ORF1ab/nsp4300Y300CtAttGt11B.1.1.2210.010101
ORF1ab/nsp4300Y300YtaTtaC11B.1.1.2660.012195
ORF1ab/nsp4300Y300delTAT---11B.1.1.3110.000358
ORF1ab/nsp4300Y300del1taTta-11B.1.1.3120.001912
ORF1ab/nsp4300Y300delTAT---11B.1.1.370.000193
ORF1ab/nsp4300Y300CtAttGt11B.1.1.3720.000689
ORF1ab/nsp4300Y300StAttCt11B.1.1.4090.002833
ORF1ab/nsp4300Y300YtaTtaC11B.1.1.5190.00004
ORF1ab/nsp4300Y300YtaTtaC11B.1.1.630.000386
ORF1ab/nsp4300Y300FtAttTt11B.1.1.70.000001
ORF1ab/nsp4300Y300StAttCt11B.1.1.700.000341
ORF1ab/nsp4300Y300YtaTtaC11B.1.1600.000031
ORF1ab/nsp4300Y300del1taTta-11B.1.160.230.004831
ORF1ab/nsp4300Y300delTAT---11B.1.177.190.001431
ORF1ab/nsp4300Y300YtaTtaC11B.1.177.600.000218
ORF1ab/nsp4300Y300CtAttGt11B.1.177.750.001041
ORF1ab/nsp4300Y300CtAttGt11B.1.20.000009
ORF1ab/nsp4300Y300YtaTtaC11B.1.20.000009
ORF1ab/nsp4300Y300HTatCat11B.1.3490.000715
ORF1ab/nsp4300Y300YtaTtaC11B.1.3510.00003
ORF1ab/nsp4300Y300YtaTtaC11B.1.36.290.000517
ORF1ab/nsp4300Y300YtaTtaC11B.1.3690.000285
ORF1ab/nsp4300Y300CtAttGt11B.1.4270.00005
ORF1ab/nsp4300Y300YtaTtaC11B.1.4280.00102
ORF1ab/nsp4300Y300CtAttGt11B.1.438.10.000107
ORF1ab/nsp4300Y300KTaTAaA11B.1.466.20.000391
ORF1ab/nsp4300Y300YtaTtaC11B.1.5610.000397
ORF1ab/nsp4300Y300XtaTtaA11B.1.5640.000426
ORF1ab/nsp4300Y300HTatCat11B.1.5640.000426
ORF1ab/nsp4300Y300NTatAat11B.1.5960.000087
ORF1ab/nsp4300Y300FtAttTt11B.1.6120.002653
ORF1ab/nsp4300Y300FtAttTt11B.1.617.20.000004
ORF1ab/nsp4300Y300delTAT---11B.1.617.20.000004
ORF1ab/nsp4300Y300StAttCt11B.1.6360.006711
ORF1ab/nsp4300Y300XtaTtaG11B.1.6370.000073
ORF1ab/nsp4300Y300delTAT---11B.150.017544
ORF1ab/nsp4300Y300delTAT---11B.340.013699
ORF1ab/nsp4300Y300delTAT---11B.4.40.018868
ORF1ab/nsp4300Y300YtaTtaC11C.350.000774
ORF1ab/nsp4300Y300YtaTtaC11D.20.000075
ORF1ab/nsp4300Y300delTAT---11P.10.000016
ORF1ab/nsp4300Y300FtAttTt11P.10.000016
ORF1ab/nsp4300Y300delTAT---11Q.10.000126
ORF1ab/nsp4300Y300YtaTtaC11Q.10.000126