CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 281 | S281S | S3044S | syn | tcA | tcG | 936 | 702 | 0.75 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281S | S3044S | syn | tcA | tcT | 936 | 233 | 0.248932 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281S | S3044S | syn | tcA | tcC | 936 | 1 | 0.00106838 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281L | S3044L | nonsyn | tCa | tTa | 855 | 854 | 0.99883 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281L | S3044L | nonsyn | tCA | tTG | 855 | 1 | 0.00116959 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281del | S3044del | del | TCA | --- | 65 | 65 | 1 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281T | S3044T | nonsyn | Tca | Aca | 31 | 31 | 1 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281P | S3044P | nonsyn | Tca | Cca | 17 | 17 | 1 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281X | S3044X | nonsyn | tCa | tAa | 11 | 10 | 0.909091 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281X | S3044X | nonsyn | tCa | tGa | 11 | 1 | 0.0909091 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281K | S3044K | nonsyn | TCa | AAa | 6 | 6 | 1 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281del1 | S3044del1 | del | tcA | tc- | 3 | 2 | 0.666667 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281del1 | S3044del1 | del | tCa | t-a | 3 | 1 | 0.333333 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281I | S3044I | nonsyn | TCA | ATC | 2 | 1 | 0.5 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281I | S3044I | nonsyn | TCa | ATa | 2 | 1 | 0.5 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281A | S3044A | nonsyn | Tca | Gca | 1 | 1 | 1 | 9395-9397 |
ORF1ab/nsp4 | 281 | S281del2 | S3044del2 | del | TCa | --a | 1 | 1 | 1 | 9395-9397 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 702 | 936 | All | 0.000134 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 233 | 936 | All | 0.000045 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcC | 1 | 936 | All | 0 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 854 | 855 | All | 0.000163 |
ORF1ab/nsp4 | 281 | S281L | tCA | tTG | 1 | 855 | All | 0 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 476 | 476 | B.1.1.7 | 0.000426 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 204 | 215 | B.1.1.7 | 0.000183 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 11 | 215 | B.1.1.7 | 0.00001 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 188 | 188 | B.1.517.1 | 0.989474 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 125 | 125 | B.1.517 | 0.053373 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 115 | 117 | AY.4 | 0.000179 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 2 | 117 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 96 | 96 | B.1.526 | 0.002256 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 65 | 65 | All | 0.000012 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 64 | 64 | P.1 | 0.001008 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 51 | 51 | B.1.348 | 0.927273 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 34 | 34 | B.1.429 | 0.0008 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 31 | 31 | All | 0.000006 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 21 | 30 | AY.103 | 0.00013 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 9 | 30 | AY.103 | 0.000056 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 29 | 29 | AY.44 | 0.000177 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 27 | 27 | B.1.1.7 | 0.000024 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 27 | 27 | B.1.617.2 | 0.000102 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 20 | 21 | B.1.617.2 | 0.000075 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 1 | 21 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 17 | 17 | All | 0.000003 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 17 | 17 | B.1.429 | 0.0004 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 17 | 17 | B.1.637 | 0.001242 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 10 | 11 | All | 0.000002 |
ORF1ab/nsp4 | 281 | S281X | tCa | tGa | 1 | 11 | All | 0 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 6 | 10 | B.1.1 | 0.000109 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 4 | 10 | B.1.1 | 0.000073 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 10 | 10 | P.1.10 | 0.002695 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 9 | 9 | B.1.177.35 | 0.00622 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 7 | 7 | AY.26 | 0.000198 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 4 | 7 | B.1 | 0.000037 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 3 | 7 | B.1 | 0.000027 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 7 | 7 | B.1.525 | 0.000792 |
ORF1ab/nsp4 | 281 | S281K | TCa | AAa | 6 | 6 | All | 0.000001 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 6 | 6 | B.1.1.318 | 0.001811 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 5 | 5 | B.1.1.523 | 0.007812 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 5 | 5 | Q.3 | 0.000725 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp4 | 281 | S281del1 | tcA | tc- | 2 | 3 | All | 0 |
ORF1ab/nsp4 | 281 | S281del1 | tCa | t-a | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 3 | 3 | AY.73 | 0.001996 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 3 | 3 | B.1.1.10 | 0.003344 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 3 | 3 | B.1.1.41 | 0.018987 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 3 | 3 | B.1.621.1 | 0.001517 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 3 | 3 | P.1.13 | 0.002695 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp4 | 281 | S281I | TCa | ATa | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 281 | S281I | TCA | ATC | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 281 | S281L | tCA | tTG | 1 | 2 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 281 | S281K | TCa | AAa | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 2 | 2 | AZ.3 | 0.00304 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp4 | 281 | S281X | tCa | tGa | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 2 | 2 | B.1.177.12 | 0.000303 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 2 | 2 | B.1.177.42 | 0.001789 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 2 | 2 | B.1.636 | 0.013423 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp4 | 281 | S281A | Tca | Gca | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 281 | S281del2 | TCa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp4 | 281 | S281del1 | tcA | tc- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 281 | S281A | Tca | Gca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 281 | S281K | TCa | AAa | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 281 | S281del1 | tcA | tc- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 281 | S281K | TCa | AAa | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 281 | S281del1 | tCa | t-a | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 281 | S281del2 | TCa | --a | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp4 | 281 | S281K | TCa | AAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcC | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 1 | 1 | B.1.326 | 0.007576 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp4 | 281 | S281P | Tca | Cca | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp4 | 281 | S281X | tCa | tAa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 281 | S281I | TCa | ATa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 281 | S281K | TCa | AAa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 281 | S281T | Tca | Aca | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 281 | S281I | TCA | ATC | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp4 | 281 | S281S | tcA | tcG | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp4 | 281 | S281del | TCA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp4 | 281 | S281L | tCa | tTa | 1 | 1 | Q.5 | 0.016949 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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