CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 281

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4281S281SS3044SsyntcAtcG9367020.759395-9397
ORF1ab/nsp4281S281SS3044SsyntcAtcT9362330.2489329395-9397
ORF1ab/nsp4281S281SS3044SsyntcAtcC93610.001068389395-9397
ORF1ab/nsp4281S281LS3044LnonsyntCatTa8558540.998839395-9397
ORF1ab/nsp4281S281LS3044LnonsyntCAtTG85510.001169599395-9397
ORF1ab/nsp4281S281delS3044deldelTCA---656519395-9397
ORF1ab/nsp4281S281TS3044TnonsynTcaAca313119395-9397
ORF1ab/nsp4281S281PS3044PnonsynTcaCca171719395-9397
ORF1ab/nsp4281S281XS3044XnonsyntCatAa11100.9090919395-9397
ORF1ab/nsp4281S281XS3044XnonsyntCatGa1110.09090919395-9397
ORF1ab/nsp4281S281KS3044KnonsynTCaAAa6619395-9397
ORF1ab/nsp4281S281del1S3044del1deltcAtc-320.6666679395-9397
ORF1ab/nsp4281S281del1S3044del1deltCat-a310.3333339395-9397
ORF1ab/nsp4281S281IS3044InonsynTCAATC210.59395-9397
ORF1ab/nsp4281S281IS3044InonsynTCaATa210.59395-9397
ORF1ab/nsp4281S281AS3044AnonsynTcaGca1119395-9397
ORF1ab/nsp4281S281del2S3044del2delTCa--a1119395-9397

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4281S281StcAtcG702936All0.000134
ORF1ab/nsp4281S281StcAtcT233936All0.000045
ORF1ab/nsp4281S281StcAtcC1936All0
ORF1ab/nsp4281S281LtCatTa854855All0.000163
ORF1ab/nsp4281S281LtCAtTG1855All0
ORF1ab/nsp4281S281LtCatTa476476B.1.1.70.000426
ORF1ab/nsp4281S281StcAtcT204215B.1.1.70.000183
ORF1ab/nsp4281S281StcAtcG11215B.1.1.70.00001
ORF1ab/nsp4281S281StcAtcG188188B.1.517.10.989474
ORF1ab/nsp4281S281StcAtcG125125B.1.5170.053373
ORF1ab/nsp4281S281StcAtcG115117AY.40.000179
ORF1ab/nsp4281S281StcAtcT2117AY.40.000003
ORF1ab/nsp4281S281LtCatTa9696B.1.5260.002256
ORF1ab/nsp4281S281delTCA---6565All0.000012
ORF1ab/nsp4281S281LtCatTa6464P.10.001008
ORF1ab/nsp4281S281StcAtcG5151B.1.3480.927273
ORF1ab/nsp4281S281StcAtcG3434B.1.4290.0008
ORF1ab/nsp4281S281TTcaAca3131All0.000006
ORF1ab/nsp4281S281StcAtcG2130AY.1030.00013
ORF1ab/nsp4281S281StcAtcT930AY.1030.000056
ORF1ab/nsp4281S281StcAtcG2929AY.440.000177
ORF1ab/nsp4281S281delTCA---2727B.1.1.70.000024
ORF1ab/nsp4281S281LtCatTa2727B.1.617.20.000102
ORF1ab/nsp4281S281StcAtcG2021B.1.617.20.000075
ORF1ab/nsp4281S281StcAtcT121B.1.617.20.000004
ORF1ab/nsp4281S281PTcaCca1717All0.000003
ORF1ab/nsp4281S281LtCatTa1717B.1.4290.0004
ORF1ab/nsp4281S281LtCatTa1717B.1.6370.001242
ORF1ab/nsp4281S281XtCatAa1011All0.000002
ORF1ab/nsp4281S281XtCatGa111All0
ORF1ab/nsp4281S281StcAtcG1010AY.430.000044
ORF1ab/nsp4281S281StcAtcG610B.1.10.000109
ORF1ab/nsp4281S281StcAtcT410B.1.10.000073
ORF1ab/nsp4281S281LtCatTa1010B.1.1.5190.000397
ORF1ab/nsp4281S281LtCatTa1010P.1.100.002695
ORF1ab/nsp4281S281StcAtcG99B.1.177.350.00622
ORF1ab/nsp4281S281LtCatTa99B.1.20.000079
ORF1ab/nsp4281S281LtCatTa99B.1.3510.000268
ORF1ab/nsp4281S281StcAtcG88AY.250.000048
ORF1ab/nsp4281S281LtCatTa77AY.260.000198
ORF1ab/nsp4281S281StcAtcT47B.10.000037
ORF1ab/nsp4281S281StcAtcG37B.10.000027
ORF1ab/nsp4281S281TTcaAca77B.1.1.70.000006
ORF1ab/nsp4281S281LtCatTa77B.1.4270.000353
ORF1ab/nsp4281S281TTcaAca77B.1.5250.000792
ORF1ab/nsp4281S281KTCaAAa66All0.000001
ORF1ab/nsp4281S281StcAtcG66AY.60.000247
ORF1ab/nsp4281S281LtCatTa66B.1.1.3180.001811
ORF1ab/nsp4281S281LtCatTa66P.1.170.000971
ORF1ab/nsp4281S281LtCatTa66R.10.00054
ORF1ab/nsp4281S281LtCatTa55AY.250.00003
ORF1ab/nsp4281S281LtCatTa55AY.30.00005
ORF1ab/nsp4281S281delTCA---55AY.40.000008
ORF1ab/nsp4281S281LtCatTa55B.1.1.5230.007812
ORF1ab/nsp4281S281delTCA---55B.1.1770.000066
ORF1ab/nsp4281S281LtCatTa55B.1.6210.000443
ORF1ab/nsp4281S281LtCatTa55Q.30.000725
ORF1ab/nsp4281S281PTcaCca44AY.40.000006
ORF1ab/nsp4281S281StcAtcG44AY.750.000224
ORF1ab/nsp4281S281LtCatTa44B.1.1.280.001245
ORF1ab/nsp4281S281StcAtcG44B.1.20.000035
ORF1ab/nsp4281S281del1tcAtc-23All0
ORF1ab/nsp4281S281del1tCat-a13All0
ORF1ab/nsp4281S281LtCatTa33AY.130.000483
ORF1ab/nsp4281S281TTcaAca33AY.40.000005
ORF1ab/nsp4281S281delTCA---33AY.4.50.000322
ORF1ab/nsp4281S281LtCatTa33AY.440.000018
ORF1ab/nsp4281S281StcAtcG33AY.730.001996
ORF1ab/nsp4281S281StcAtcG33B.1.1.100.003344
ORF1ab/nsp4281S281StcAtcG33B.1.1.410.018987
ORF1ab/nsp4281S281PTcaCca33B.1.1.70.000003
ORF1ab/nsp4281S281LtCatTa33B.1.1770.00004
ORF1ab/nsp4281S281StcAtcG33B.1.3510.000089
ORF1ab/nsp4281S281StcAtcG33B.1.4270.000151
ORF1ab/nsp4281S281TTcaAca33B.1.5260.000071
ORF1ab/nsp4281S281delTCA---33B.1.617.20.000011
ORF1ab/nsp4281S281LtCatTa33B.1.621.10.001517
ORF1ab/nsp4281S281LtCatTa33C.370.000348
ORF1ab/nsp4281S281StcAtcG33P.10.000047
ORF1ab/nsp4281S281LtCatTa33P.1.130.002695
ORF1ab/nsp4281S281LtCatTa22A.2.50.000998
ORF1ab/nsp4281S281ITCaATa12All0
ORF1ab/nsp4281S281ITCAATC12All0
ORF1ab/nsp4281S281delTCA---22AY.1110.000366
ORF1ab/nsp4281S281StcAtcG22AY.1140.000462
ORF1ab/nsp4281S281StcAtcG22AY.200.000078
ORF1ab/nsp4281S281PTcaCca22AY.30.00002
ORF1ab/nsp4281S281LtCatTa12AY.40.000002
ORF1ab/nsp4281S281LtCAtTG12AY.40.000002
ORF1ab/nsp4281S281KTCaAAa22AY.440.000012
ORF1ab/nsp4281S281StcAtcG22AY.600.001876
ORF1ab/nsp4281S281StcAtcT22AY.980.000158
ORF1ab/nsp4281S281LtCatTa22AZ.30.00304
ORF1ab/nsp4281S281LtCatTa22B.10.000018
ORF1ab/nsp4281S281LtCatTa22B.1.10.000036
ORF1ab/nsp4281S281StcAtcG22B.1.1.2690.002706
ORF1ab/nsp4281S281StcAtcG22B.1.1.4160.00181
ORF1ab/nsp4281S281StcAtcG22B.1.1.5190.000079
ORF1ab/nsp4281S281XtCatGa12B.1.1.70.000001
ORF1ab/nsp4281S281XtCatAa12B.1.1.70.000001
ORF1ab/nsp4281S281StcAtcG22B.1.177.120.000303
ORF1ab/nsp4281S281StcAtcG22B.1.177.420.001789
ORF1ab/nsp4281S281LtCatTa22B.1.5750.000607
ORF1ab/nsp4281S281TTcaAca22B.1.617.20.000008
ORF1ab/nsp4281S281LtCatTa22B.1.6310.006734
ORF1ab/nsp4281S281LtCatTa22B.1.6360.013423
ORF1ab/nsp4281S281XtCatAa11A0.000387
ORF1ab/nsp4281S281LtCatTa11A.10.000282
ORF1ab/nsp4281S281StcAtcG11A.210.00277
ORF1ab/nsp4281S281ATcaGca11All0
ORF1ab/nsp4281S281del2TCa--a11All0
ORF1ab/nsp4281S281LtCatTa11AY.10.000396
ORF1ab/nsp4281S281LtCatTa11AY.100.00053
ORF1ab/nsp4281S281del1tcAtc-11AY.1020.000027
ORF1ab/nsp4281S281XtCatAa11AY.1030.000006
ORF1ab/nsp4281S281LtCatTa11AY.1030.000006
ORF1ab/nsp4281S281LtCatTa11AY.1130.000142
ORF1ab/nsp4281S281StcAtcG11AY.1170.000085
ORF1ab/nsp4281S281LtCatTa11AY.1200.000037
ORF1ab/nsp4281S281delTCA---11AY.1200.000037
ORF1ab/nsp4281S281LtCatTa11AY.20.000356
ORF1ab/nsp4281S281StcAtcG11AY.230.00007
ORF1ab/nsp4281S281StcAtcG11AY.290.000016
ORF1ab/nsp4281S281LtCatTa11AY.3.10.000085
ORF1ab/nsp4281S281StcAtcT11AY.310.018519
ORF1ab/nsp4281S281delTCA---11AY.360.000148
ORF1ab/nsp4281S281TTcaAca11AY.390.000025
ORF1ab/nsp4281S281LtCatTa11AY.390.000025
ORF1ab/nsp4281S281StcAtcG11AY.390.000025
ORF1ab/nsp4281S281ATcaGca11AY.40.000002
ORF1ab/nsp4281S281XtCatAa11AY.40.000002
ORF1ab/nsp4281S281StcAtcG11AY.4.10.000737
ORF1ab/nsp4281S281StcAtcG11AY.4.20.000022
ORF1ab/nsp4281S281StcAtcG11AY.420.00004
ORF1ab/nsp4281S281KTCaAAa11AY.420.00004
ORF1ab/nsp4281S281TTcaAca11AY.430.000004
ORF1ab/nsp4281S281delTCA---11AY.430.000004
ORF1ab/nsp4281S281del1tcAtc-11AY.440.000006
ORF1ab/nsp4281S281PTcaCca11AY.440.000006
ORF1ab/nsp4281S281TTcaAca11AY.440.000006
ORF1ab/nsp4281S281PTcaCca11AY.46.10.001027
ORF1ab/nsp4281S281StcAtcG11AY.46.20.000635
ORF1ab/nsp4281S281StcAtcG11AY.50.000021
ORF1ab/nsp4281S281KTCaAAa11AY.540.000095
ORF1ab/nsp4281S281StcAtcT11AY.590.00053
ORF1ab/nsp4281S281StcAtcT11AY.840.000437
ORF1ab/nsp4281S281delTCA---11AY.90.000068
ORF1ab/nsp4281S281StcAtcT11AY.9.20.000037
ORF1ab/nsp4281S281delTCA---11AY.9.20.000037
ORF1ab/nsp4281S281PTcaCca11AY.980.000079
ORF1ab/nsp4281S281StcAtcG11AY.99.20.000092
ORF1ab/nsp4281S281delTCA---11B0.000128
ORF1ab/nsp4281S281LtCatTa11B0.000128
ORF1ab/nsp4281S281XtCatAa11B.10.000009
ORF1ab/nsp4281S281PTcaCca11B.10.000009
ORF1ab/nsp4281S281delTCA---11B.10.000009
ORF1ab/nsp4281S281TTcaAca11B.10.000009
ORF1ab/nsp4281S281del1tCat-a11B.10.000009
ORF1ab/nsp4281S281delTCA---11B.1.10.000018
ORF1ab/nsp4281S281XtCatAa11B.1.10.000018
ORF1ab/nsp4281S281StcAtcG11B.1.1.2140.000055
ORF1ab/nsp4281S281del2TCa--a11B.1.1.2360.006897
ORF1ab/nsp4281S281StcAtcG11B.1.1.250.000569
ORF1ab/nsp4281S281delTCA---11B.1.1.370.000193
ORF1ab/nsp4281S281TTcaAca11B.1.1.5190.00004
ORF1ab/nsp4281S281XtCatAa11B.1.1.540.003021
ORF1ab/nsp4281S281KTCaAAa11B.1.1.70.000001
ORF1ab/nsp4281S281PTcaCca11B.1.160.140.002119
ORF1ab/nsp4281S281StcAtcT11B.1.1770.000013
ORF1ab/nsp4281S281StcAtcG11B.1.177.150.000631
ORF1ab/nsp4281S281delTCA---11B.1.177.170.000821
ORF1ab/nsp4281S281delTCA---11B.1.177.190.001431
ORF1ab/nsp4281S281StcAtcG11B.1.177.230.003236
ORF1ab/nsp4281S281LtCatTa11B.1.177.310.011494
ORF1ab/nsp4281S281delTCA---11B.1.177.540.000606
ORF1ab/nsp4281S281delTCA---11B.1.177.600.000218
ORF1ab/nsp4281S281delTCA---11B.1.177.810.000189
ORF1ab/nsp4281S281XtCatAa11B.1.177.860.000183
ORF1ab/nsp4281S281TTcaAca11B.1.20.000009
ORF1ab/nsp4281S281delTCA---11B.1.20.000009
ORF1ab/nsp4281S281StcAtcC11B.1.2100.002132
ORF1ab/nsp4281S281PTcaCca11B.1.2340.000132
ORF1ab/nsp4281S281StcAtcG11B.1.2430.00007
ORF1ab/nsp4281S281LtCatTa11B.1.258.140.00098
ORF1ab/nsp4281S281StcAtcG11B.1.258.170.000104
ORF1ab/nsp4281S281XtCatAa11B.1.3010.005917
ORF1ab/nsp4281S281StcAtcG11B.1.3240.001605
ORF1ab/nsp4281S281PTcaCca11B.1.3260.007576
ORF1ab/nsp4281S281LtCatTa11B.1.3490.000715
ORF1ab/nsp4281S281LtCatTa11B.1.3670.000792
ORF1ab/nsp4281S281LtCatTa11B.1.4000.000429
ORF1ab/nsp4281S281TTcaAca11B.1.4270.00005
ORF1ab/nsp4281S281LtCatTa11B.1.5250.000113
ORF1ab/nsp4281S281StcAtcT11B.1.5300.007143
ORF1ab/nsp4281S281StcAtcT11B.1.5330.009615
ORF1ab/nsp4281S281PTcaCca11B.1.5600.00463
ORF1ab/nsp4281S281XtCatAa11B.1.5610.000397
ORF1ab/nsp4281S281LtCatTa11B.1.5610.000397
ORF1ab/nsp4281S281ITCaATa11B.1.5610.000397
ORF1ab/nsp4281S281KTCaAAa11B.1.5610.000397
ORF1ab/nsp4281S281TTcaAca11B.1.5610.000397
ORF1ab/nsp4281S281StcAtcG11B.1.5960.000087
ORF1ab/nsp4281S281LtCatTa11B.1.5960.000087
ORF1ab/nsp4281S281TTcaAca11B.1.5970.00463
ORF1ab/nsp4281S281LtCatTa11B.1.617.10.000129
ORF1ab/nsp4281S281LtCatTa11B.1.6280.000352
ORF1ab/nsp4281S281delTCA---11B.150.017544
ORF1ab/nsp4281S281delTCA---11B.340.013699
ORF1ab/nsp4281S281delTCA---11B.4.40.018868
ORF1ab/nsp4281S281StcAtcG11B.6.60.000889
ORF1ab/nsp4281S281ITCAATC11C.350.000774
ORF1ab/nsp4281S281StcAtcG11C.360.000911
ORF1ab/nsp4281S281LtCatTa11C.36.30.000567
ORF1ab/nsp4281S281LtCatTa11C.36.3.10.002717
ORF1ab/nsp4281S281StcAtcG11N.60.007092
ORF1ab/nsp4281S281delTCA---11P.10.000016
ORF1ab/nsp4281S281StcAtcG11P.1.70.000319
ORF1ab/nsp4281S281LtCatTa11P.20.000187
ORF1ab/nsp4281S281StcAtcG11P.30.001595
ORF1ab/nsp4281S281delTCA---11Q.10.000126
ORF1ab/nsp4281S281LtCatTa11Q.40.000455
ORF1ab/nsp4281S281LtCatTa11Q.50.016949