CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 27

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp427I27TI2790TnonsynaTaaCa1986198618633-8635
ORF1ab/nsp427I27LI2790LnonsynAtaCta2422310.9545458633-8635
ORF1ab/nsp427I27LI2790LnonsynAtaTta24290.03719018633-8635
ORF1ab/nsp427I27LI2790LnonsynAtACtT24220.008264468633-8635
ORF1ab/nsp427I27VI2790VnonsynAtaGta14414418633-8635
ORF1ab/nsp427I27delI2790deldelATA---737318633-8635
ORF1ab/nsp427I27MI2790MnonsynatAatG595918633-8635
ORF1ab/nsp427I27II2790IsynatAatT15110.7333338633-8635
ORF1ab/nsp427I27II2790IsynatAatC1540.2666678633-8635
ORF1ab/nsp427I27del1I2790del1delatAat-12100.8333338633-8635
ORF1ab/nsp427I27del1I2790del1delAtACt-1210.08333338633-8635
ORF1ab/nsp427I27del1I2790del1delaTaa-a1210.08333338633-8635
ORF1ab/nsp427I27RI2790RnonsynaTaaGa840.58633-8635
ORF1ab/nsp427I27RI2790RnonsynATaCGa820.258633-8635
ORF1ab/nsp427I27RI2790RnonsynATACGT820.258633-8635
ORF1ab/nsp427I27KI2790KnonsynaTaaAa2218633-8635
ORF1ab/nsp427I27SI2790SnonsynaTAaGT2218633-8635
ORF1ab/nsp427I27del2I2790del2delaTAa--2218633-8635
ORF1ab/nsp427I27FI2790FnonsynAtATtT1118633-8635

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp427I27TaTaaCa19861986All0.00038
ORF1ab/nsp427I27TaTaaCa996996AY.600.934334
ORF1ab/nsp427I27TaTaaCa285285B.1.6340.976027
ORF1ab/nsp427I27LAtaCta231242All0.000044
ORF1ab/nsp427I27LAtaTta9242All0.000002
ORF1ab/nsp427I27LAtACtT2242All0
ORF1ab/nsp427I27LAtaCta196196AY.40.000305
ORF1ab/nsp427I27VAtaGta144144All0.000028
ORF1ab/nsp427I27TaTaaCa124124AY.40.000193
ORF1ab/nsp427I27TaTaaCa7676B.1.1.70.000068
ORF1ab/nsp427I27delATA---7373All0.000014
ORF1ab/nsp427I27TaTaaCa6464B.1.2410.051948
ORF1ab/nsp427I27MatAatG5959All0.000011
ORF1ab/nsp427I27TaTaaCa5151B.1.2430.003549
ORF1ab/nsp427I27TaTaaCa4545AY.250.000271
ORF1ab/nsp427I27TaTaaCa3838AY.1200.001413
ORF1ab/nsp427I27delATA---3131B.1.1.70.000028
ORF1ab/nsp427I27TaTaaCa2929AY.30.000288
ORF1ab/nsp427I27VAtaGta2323B.1.1.70.000021
ORF1ab/nsp427I27TaTaaCa2323B.1.177.730.013024
ORF1ab/nsp427I27VAtaGta2222AY.40.000034
ORF1ab/nsp427I27MatAatG2222B.1.20.000194
ORF1ab/nsp427I27VAtaGta1919AY.250.000114
ORF1ab/nsp427I27VAtaGta1919AY.750.001064
ORF1ab/nsp427I27TaTaaCa1818B.1.6230.009657
ORF1ab/nsp427I27TaTaaCa1717B.1.6370.001242
ORF1ab/nsp427I27IatAatT1115All0.000002
ORF1ab/nsp427I27IatAatC415All0.000001
ORF1ab/nsp427I27VAtaGta1414B.6.60.012444
ORF1ab/nsp427I27TaTaaCa1313B.1.2580.000865
ORF1ab/nsp427I27del1atAat-1012All0.000002
ORF1ab/nsp427I27del1AtACt-112All0
ORF1ab/nsp427I27del1aTaa-a112All0
ORF1ab/nsp427I27TaTaaCa1212B.1.258.110.004756
ORF1ab/nsp427I27TaTaaCa1111B.10.000101
ORF1ab/nsp427I27TaTaaCa1111B.1.4000.004719
ORF1ab/nsp427I27TaTaaCa1111B.1.617.20.000041
ORF1ab/nsp427I27TaTaaCa1010B.1.6210.000885
ORF1ab/nsp427I27LAtaCta99B.1.5260.000212
ORF1ab/nsp427I27RaTaaGa48All0.000001
ORF1ab/nsp427I27RATaCGa28All0
ORF1ab/nsp427I27RATACGT28All0
ORF1ab/nsp427I27TaTaaCa88AY.420.000322
ORF1ab/nsp427I27VAtaGta88B.10.000073
ORF1ab/nsp427I27TaTaaCa88B.1.1770.000105
ORF1ab/nsp427I27TaTaaCa77AY.330.000467
ORF1ab/nsp427I27MatAatG77AY.40.000011
ORF1ab/nsp427I27TaTaaCa77AY.470.000218
ORF1ab/nsp427I27TaTaaCa77B.1.20.000062
ORF1ab/nsp427I27RaTaaGa260.111111
ORF1ab/nsp427I27RATaCGa260.111111
ORF1ab/nsp427I27RATACGT260.111111
ORF1ab/nsp427I27VAtaGta66AY.1030.000037
ORF1ab/nsp427I27TaTaaCa66AY.440.000037
ORF1ab/nsp427I27LAtaCta66B.1.617.20.000023
ORF1ab/nsp427I27IatAatT350.166667
ORF1ab/nsp427I27IatAatC250.111111
ORF1ab/nsp427I27LAtACtT250.111111
ORF1ab/nsp427I27LAtaCta250.111111
ORF1ab/nsp427I27LAtaTta150.055556
ORF1ab/nsp427I27VAtaGta55AY.30.00005
ORF1ab/nsp427I27delATA---55AY.40.000008
ORF1ab/nsp427I27delATA---55AY.4.50.000537
ORF1ab/nsp427I27TaTaaCa55AY.450.000608
ORF1ab/nsp427I27VAtaGta55AY.850.002136
ORF1ab/nsp427I27IatAatT55B.1.1.470.026738
ORF1ab/nsp427I27TaTaaCa55B.1.1.5060.185185
ORF1ab/nsp427I27TaTaaCa55B.1.4270.000252
ORF1ab/nsp427I27TaTaaCa55B.1.5250.000566
ORF1ab/nsp427I27MatAatG55B.1.617.20.000019
ORF1ab/nsp427I27TaTaaCa55P.10.000079
ORF1ab/nsp427I27MatAatG44AY.590.002119
ORF1ab/nsp427I27delATA---44B.10.000037
ORF1ab/nsp427I27del1atAat-44B.1.1.70.000004
ORF1ab/nsp427I27LAtaCta34B.1.1.70.000003
ORF1ab/nsp427I27LAtaTta14B.1.1.70.000001
ORF1ab/nsp427I27TaTaaCa44B.1.466.10.028777
ORF1ab/nsp427I27TaTaaCa44R.10.00036
ORF1ab/nsp427I27MatAatG33AY.1020.00008
ORF1ab/nsp427I27TaTaaCa33AY.1030.000019
ORF1ab/nsp427I27MatAatG33AY.1030.000019
ORF1ab/nsp427I27TaTaaCa33AY.200.000117
ORF1ab/nsp427I27TaTaaCa33AY.430.000013
ORF1ab/nsp427I27TaTaaCa33AY.650.001599
ORF1ab/nsp427I27delATA---33B.1.1770.00004
ORF1ab/nsp427I27TaTaaCa33B.1.177.870.002183
ORF1ab/nsp427I27VAtaGta33B.1.4290.000071
ORF1ab/nsp427I27TaTaaCa33B.1.5260.000071
ORF1ab/nsp427I27SaTAaGT220.111111
ORF1ab/nsp427I27MatAatG220.111111
ORF1ab/nsp427I27delATA---220.111111
ORF1ab/nsp427I27del2aTAa--22All0
ORF1ab/nsp427I27KaTaaAa22All0
ORF1ab/nsp427I27SaTAaGT22All0
ORF1ab/nsp427I27TaTaaCa22AY.1180.000125
ORF1ab/nsp427I27TaTaaCa22AY.1190.000071
ORF1ab/nsp427I27TaTaaCa22AY.130.000322
ORF1ab/nsp427I27TaTaaCa22AY.290.000032
ORF1ab/nsp427I27TaTaaCa22AY.390.000049
ORF1ab/nsp427I27delATA---22AY.430.000009
ORF1ab/nsp427I27LAtaCta22AY.430.000009
ORF1ab/nsp427I27VAtaGta22AY.430.000009
ORF1ab/nsp427I27VAtaGta22AY.440.000012
ORF1ab/nsp427I27LAtaCta22AY.440.000012
ORF1ab/nsp427I27TaTaaCa22AY.670.000929
ORF1ab/nsp427I27TaTaaCa22AY.750.000112
ORF1ab/nsp427I27TaTaaCa22AY.75.10.000361
ORF1ab/nsp427I27TaTaaCa22AY.9.20.000073
ORF1ab/nsp427I27delATA---22B.1.10.000036
ORF1ab/nsp427I27MatAatG22B.1.1.2430.008163
ORF1ab/nsp427I27TaTaaCa22B.1.1.3960.090909
ORF1ab/nsp427I27TaTaaCa22B.1.1.5190.000079
ORF1ab/nsp427I27del2aTAa--22B.1.1.70.000002
ORF1ab/nsp427I27VAtaGta22B.1.20.000018
ORF1ab/nsp427I27del1atAat-12B.1.20.000009
ORF1ab/nsp427I27del1AtACt-12B.1.20.000009
ORF1ab/nsp427I27TaTaaCa22B.1.3060.011429
ORF1ab/nsp427I27VAtaGta22B.1.617.20.000008
ORF1ab/nsp427I27delATA---22B.1.617.20.000008
ORF1ab/nsp427I27VAtaGta22C.36.30.001134
ORF1ab/nsp427I27TaTaaCa22D.20.00015
ORF1ab/nsp427I27LAtaCta22P.10.000032
ORF1ab/nsp427I27FAtATtT110.055556
ORF1ab/nsp427I27TaTaaCa11A0.000387
ORF1ab/nsp427I27IatAatC11A0.000387
ORF1ab/nsp427I27delATA---11A.2.40.003367
ORF1ab/nsp427I27FAtATtT11All0
ORF1ab/nsp427I27MatAatG11AY.1000.000046
ORF1ab/nsp427I27VAtaGta11AY.1010.00049
ORF1ab/nsp427I27LAtaCta11AY.1020.000027
ORF1ab/nsp427I27VAtaGta11AY.1020.000027
ORF1ab/nsp427I27LAtaCta11AY.1030.000006
ORF1ab/nsp427I27MatAatG11AY.1140.000231
ORF1ab/nsp427I27MatAatG11AY.1160.000287
ORF1ab/nsp427I27LAtaCta11AY.116.10.000311
ORF1ab/nsp427I27TaTaaCa11AY.23.10.000417
ORF1ab/nsp427I27delATA---11AY.250.000006
ORF1ab/nsp427I27VAtaGta11AY.260.000028
ORF1ab/nsp427I27TaTaaCa11AY.260.000028
ORF1ab/nsp427I27MatAatG11AY.270.000065
ORF1ab/nsp427I27IatAatT11AY.290.000016
ORF1ab/nsp427I27TaTaaCa11AY.3.10.000085
ORF1ab/nsp427I27IatAatT11AY.300.000396
ORF1ab/nsp427I27LAtaCta11AY.330.000067
ORF1ab/nsp427I27TaTaaCa11AY.360.000148
ORF1ab/nsp427I27LAtaCta11AY.390.000025
ORF1ab/nsp427I27TaTaaCa11AY.4.10.000737
ORF1ab/nsp427I27delATA---11AY.420.00004
ORF1ab/nsp427I27LAtaCta11AY.420.00004
ORF1ab/nsp427I27RaTaaGa11AY.430.000004
ORF1ab/nsp427I27TaTaaCa11AY.46.40.000165
ORF1ab/nsp427I27TaTaaCa11AY.50.000021
ORF1ab/nsp427I27delATA---11AY.50.000021
ORF1ab/nsp427I27TaTaaCa11AY.520.000814
ORF1ab/nsp427I27LAtaCta11AY.550.000917
ORF1ab/nsp427I27TaTaaCa11AY.550.000917
ORF1ab/nsp427I27TaTaaCa11AY.60.000041
ORF1ab/nsp427I27LAtaTta11AY.60.000041
ORF1ab/nsp427I27MatAatG11AY.60.000041
ORF1ab/nsp427I27KaTaaAa11AY.600.000938
ORF1ab/nsp427I27delATA---11AY.600.000938
ORF1ab/nsp427I27VAtaGta11AY.710.000475
ORF1ab/nsp427I27TaTaaCa11AY.850.000427
ORF1ab/nsp427I27TaTaaCa11AY.880.000884
ORF1ab/nsp427I27delATA---11AY.90.000068
ORF1ab/nsp427I27MatAatG11AY.90.000068
ORF1ab/nsp427I27LAtaCta11AY.9.20.000037
ORF1ab/nsp427I27TaTaaCa11AY.930.000273
ORF1ab/nsp427I27TaTaaCa11AY.940.000443
ORF1ab/nsp427I27TaTaaCa11AY.980.000079
ORF1ab/nsp427I27LAtaTta11B.10.000009
ORF1ab/nsp427I27del1atAat-11B.10.000009
ORF1ab/nsp427I27del1atAat-11B.1.10.000018
ORF1ab/nsp427I27TaTaaCa11B.1.10.000018
ORF1ab/nsp427I27MatAatG11B.1.10.000018
ORF1ab/nsp427I27LAtaTta11B.1.10.000018
ORF1ab/nsp427I27LAtaTta11B.1.1.250.000569
ORF1ab/nsp427I27delATA---11B.1.1.3060.000438
ORF1ab/nsp427I27LAtaTta11B.1.1.3060.000438
ORF1ab/nsp427I27VAtaGta11B.1.1.330.000421
ORF1ab/nsp427I27delATA---11B.1.1.4090.002833
ORF1ab/nsp427I27del1aTaa-a11B.1.1.4480.002033
ORF1ab/nsp427I27delATA---11B.1.1.460.004367
ORF1ab/nsp427I27del1atAat-11B.1.1.700.000341
ORF1ab/nsp427I27MatAatG11B.1.1390.000733
ORF1ab/nsp427I27TaTaaCa11B.1.1570.002985
ORF1ab/nsp427I27IatAatT11B.1.1770.000013
ORF1ab/nsp427I27VAtaGta11B.1.1770.000013
ORF1ab/nsp427I27del1atAat-11B.1.1770.000013
ORF1ab/nsp427I27delATA---11B.1.177.110.001698
ORF1ab/nsp427I27delATA---11B.1.177.210.000076
ORF1ab/nsp427I27VAtaGta11B.1.177.40.000211
ORF1ab/nsp427I27TaTaaCa11B.1.177.460.000918
ORF1ab/nsp427I27delATA---11B.1.177.630.002703
ORF1ab/nsp427I27TaTaaCa11B.1.177.70.000165
ORF1ab/nsp427I27delATA---11B.1.177.830.001481
ORF1ab/nsp427I27delATA---11B.1.230.006061
ORF1ab/nsp427I27delATA---11B.1.258.30.001675
ORF1ab/nsp427I27LAtaTta11B.1.3510.00003
ORF1ab/nsp427I27TaTaaCa11B.1.3510.00003
ORF1ab/nsp427I27VAtaGta11B.1.3510.00003
ORF1ab/nsp427I27del1atAat-11B.1.36.180.00042
ORF1ab/nsp427I27KaTaaAa11B.1.36.290.000517
ORF1ab/nsp427I27TaTaaCa11B.1.3960.000706
ORF1ab/nsp427I27TaTaaCa11B.1.4290.000024
ORF1ab/nsp427I27TaTaaCa11B.1.4590.004082
ORF1ab/nsp427I27LAtaCta11B.1.466.20.000391
ORF1ab/nsp427I27MatAatG11B.1.5260.000024
ORF1ab/nsp427I27VAtaGta11B.1.5770.000687
ORF1ab/nsp427I27TaTaaCa11B.1.617.10.000129
ORF1ab/nsp427I27IatAatC11B.1.617.20.000004
ORF1ab/nsp427I27TaTaaCa11B.1.6190.000871
ORF1ab/nsp427I27TaTaaCa11B.1.6250.002353
ORF1ab/nsp427I27delATA---11B.1.6300.005236
ORF1ab/nsp427I27LAtaTta11B.1.6370.000073
ORF1ab/nsp427I27RaTaaGa11C.350.000774
ORF1ab/nsp427I27TaTaaCa11C.360.000911
ORF1ab/nsp427I27TaTaaCa11C.36.30.000567
ORF1ab/nsp427I27VAtaGta11D.20.000075
ORF1ab/nsp427I27MatAatG11P.10.000016
ORF1ab/nsp427I27TaTaaCa11P.1.120.000484
ORF1ab/nsp427I27MatAatG11P.20.000187
ORF1ab/nsp427I27TaTaaCa11Q.10.000126
ORF1ab/nsp427I27delATA---11U.30.003861
ORF1ab/nsp427I27TaTaaCa11W.40.001351