CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 269

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4269T269IT3032InonsynaCaaTa1822182219359-9361
ORF1ab/nsp4269T269AT3032AnonsynAcaGca858519359-9361
ORF1ab/nsp4269T269delT3032deldelACA---797919359-9361
ORF1ab/nsp4269T269KT3032KnonsynaCaaAa717119359-9361
ORF1ab/nsp4269T269TT3032TsynacAacG55470.8545459359-9361
ORF1ab/nsp4269T269TT3032TsynacAacT5550.09090919359-9361
ORF1ab/nsp4269T269TT3032TsynacAacC5530.05454559359-9361
ORF1ab/nsp4269T269ST3032SnonsynAcaTca430.759359-9361
ORF1ab/nsp4269T269del1T3032del1delaCaa-a420.59359-9361
ORF1ab/nsp4269T269ST3032SnonsynaCAaGT410.259359-9361
ORF1ab/nsp4269T269del1T3032del1delAca-ca410.259359-9361
ORF1ab/nsp4269T269del1T3032del1delACA-NN410.259359-9361
ORF1ab/nsp4269T269del2T3032del2delACA--N320.6666679359-9361
ORF1ab/nsp4269T269LT3032LnonsynACaTTa320.6666679359-9361
ORF1ab/nsp4269T269del2T3032del2delaCAa--310.3333339359-9361
ORF1ab/nsp4269T269LT3032LnonsynACaCTa310.3333339359-9361
ORF1ab/nsp4269T269PT3032PnonsynAcaCca2219359-9361
ORF1ab/nsp4269T269RT3032RnonsynaCaaGa2219359-9361
ORF1ab/nsp4269T269NT3032NnonsynaCAaAC1119359-9361

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4269T269IaCaaTa18221822All0.000348
ORF1ab/nsp4269T269IaCaaTa296296B.1.1.70.000265
ORF1ab/nsp4269T269IaCaaTa256256AY.1170.021636
ORF1ab/nsp4269T269IaCaaTa165165AY.440.001004
ORF1ab/nsp4269T269IaCaaTa152152B.1.6020.993464
ORF1ab/nsp4269T269AAcaGca8585All0.000016
ORF1ab/nsp4269T269IaCaaTa8080B.1.3510.002378
ORF1ab/nsp4269T269delACA---7979All0.000015
ORF1ab/nsp4269T269KaCaaAa7171All0.000014
ORF1ab/nsp4269T269IaCaaTa6464B.1.177.770.046478
ORF1ab/nsp4269T269IaCaaTa6060AY.40.000093
ORF1ab/nsp4269T269TacAacG4755All0.000009
ORF1ab/nsp4269T269TacAacT555All0.000001
ORF1ab/nsp4269T269TacAacC355All0.000001
ORF1ab/nsp4269T269IaCaaTa5555B.1.1.2160.048976
ORF1ab/nsp4269T269IaCaaTa5252AY.250.000313
ORF1ab/nsp4269T269IaCaaTa4646B.1.1600.001435
ORF1ab/nsp4269T269IaCaaTa3939B.1.2670.722222
ORF1ab/nsp4269T269IaCaaTa3838B.1.10.000689
ORF1ab/nsp4269T269IaCaaTa3737B.10.000339
ORF1ab/nsp4269T269IaCaaTa3737B.1.617.20.000139
ORF1ab/nsp4269T269delACA---3434B.1.1.70.00003
ORF1ab/nsp4269T269IaCaaTa3434P.10.000536
ORF1ab/nsp4269T269IaCaaTa2929B.1.1.2840.003115
ORF1ab/nsp4269T269KaCaaAa2727AY.370.008534
ORF1ab/nsp4269T269IaCaaTa2121B.1.20.000185
ORF1ab/nsp4269T269IaCaaTa2121B.1.4260.021191
ORF1ab/nsp4269T269IaCaaTa2020B.1.360.002918
ORF1ab/nsp4269T269IaCaaTa1919AY.1030.000118
ORF1ab/nsp4269T269IaCaaTa1717AY.200.000661
ORF1ab/nsp4269T269IaCaaTa1616AY.60.000658
ORF1ab/nsp4269T269AAcaGca1515AY.40.000023
ORF1ab/nsp4269T269IaCaaTa1313B.1.1770.000171
ORF1ab/nsp4269T269IaCaaTa1212AY.430.000053
ORF1ab/nsp4269T269IaCaaTa1212B.1.1.3170.00494
ORF1ab/nsp4269T269IaCaaTa1212B.1.4690.043321
ORF1ab/nsp4269T269KaCaaAa1111B.1.1.2940.013924
ORF1ab/nsp4269T269AAcaGca1111B.1.1.70.00001
ORF1ab/nsp4269T269KaCaaAa1111B.1.1.70.00001
ORF1ab/nsp4269T269IaCaaTa1111B.1.4290.000259
ORF1ab/nsp4269T269TacAacG1111B.1.5260.000259
ORF1ab/nsp4269T269TacAacG79B.1.1.70.000006
ORF1ab/nsp4269T269TacAacT29B.1.1.70.000002
ORF1ab/nsp4269T269IaCaaTa88AY.270.000518
ORF1ab/nsp4269T269IaCaaTa88AY.4.20.000174
ORF1ab/nsp4269T269IaCaaTa88B.1.5260.000188
ORF1ab/nsp4269T269AAcaGca88B.1.617.20.00003
ORF1ab/nsp4269T269IaCaaTa88Y.10.102564
ORF1ab/nsp4269T269AAcaGca77AY.30.00007
ORF1ab/nsp4269T269delACA---77AY.40.000011
ORF1ab/nsp4269T269AAcaGca77B.1.20.000062
ORF1ab/nsp4269T269IaCaaTa66AY.1020.000159
ORF1ab/nsp4269T269IaCaaTa66AY.390.000148
ORF1ab/nsp4269T269IaCaaTa66B0.000767
ORF1ab/nsp4269T269IaCaaTa66B.1.1.5190.000238
ORF1ab/nsp4269T269IaCaaTa66C.140.025974
ORF1ab/nsp4269T269IaCaaTa55AY.30.00005
ORF1ab/nsp4269T269IaCaaTa55AY.610.000524
ORF1ab/nsp4269T269IaCaaTa55B.1.1.4340.001743
ORF1ab/nsp4269T269delACA---55B.1.1770.000066
ORF1ab/nsp4269T269SAcaTca34All0.000001
ORF1ab/nsp4269T269del1aCaa-a24All0
ORF1ab/nsp4269T269del1Aca-ca14All0
ORF1ab/nsp4269T269SaCAaGT14All0
ORF1ab/nsp4269T269del1ACA-NN14All0
ORF1ab/nsp4269T269IaCaaTa44AY.290.000063
ORF1ab/nsp4269T269AAcaGca44AY.360.000593
ORF1ab/nsp4269T269delACA---44AY.4.50.00043
ORF1ab/nsp4269T269AAcaGca44AY.440.000024
ORF1ab/nsp4269T269TacAacG44B.1.1190.042105
ORF1ab/nsp4269T269IaCaaTa44B.1.6210.000354
ORF1ab/nsp4269T269IaCaaTa44P.1.140.000191
ORF1ab/nsp4269T269del2ACA--N23All0
ORF1ab/nsp4269T269LACaTTa23All0
ORF1ab/nsp4269T269LACaCTa13All0
ORF1ab/nsp4269T269del2aCAa--13All0
ORF1ab/nsp4269T269AAcaGca33AY.1020.00008
ORF1ab/nsp4269T269IaCaaTa33AY.9.20.00011
ORF1ab/nsp4269T269AAcaGca33B.10.000027
ORF1ab/nsp4269T269TacAacG33B.10.000027
ORF1ab/nsp4269T269IaCaaTa33B.1.1.3480.002389
ORF1ab/nsp4269T269IaCaaTa33B.1.5170.001281
ORF1ab/nsp4269T269TacAacG23B.1.617.20.000008
ORF1ab/nsp4269T269TacAacT13B.1.617.20.000004
ORF1ab/nsp4269T269IaCaaTa33B.400.001093
ORF1ab/nsp4269T269IaCaaTa33P.1.130.002695
ORF1ab/nsp4269T269IaCaaTa33P.1.150.000697
ORF1ab/nsp4269T269KaCaaAa33P.1.70.000958
ORF1ab/nsp4269T269IaCaaTa33R.10.00027
ORF1ab/nsp4269T269RaCaaGa22All0
ORF1ab/nsp4269T269PAcaCca22All0
ORF1ab/nsp4269T269AAcaGca22AY.1000.000092
ORF1ab/nsp4269T269delACA---22AY.1110.000366
ORF1ab/nsp4269T269AAcaGca22AY.1140.000462
ORF1ab/nsp4269T269IaCaaTa22AY.1160.000574
ORF1ab/nsp4269T269AAcaGca22AY.1190.000071
ORF1ab/nsp4269T269AAcaGca22AY.1200.000074
ORF1ab/nsp4269T269IaCaaTa22AY.16.10.00094
ORF1ab/nsp4269T269AAcaGca22AY.250.000012
ORF1ab/nsp4269T269KaCaaAa22AY.4.20.000043
ORF1ab/nsp4269T269IaCaaTa22AY.420.00008
ORF1ab/nsp4269T269TacAacG22AY.430.000009
ORF1ab/nsp4269T269delACA---22AY.430.000009
ORF1ab/nsp4269T269IaCaaTa22AY.46.40.000329
ORF1ab/nsp4269T269IaCaaTa22AY.50.000041
ORF1ab/nsp4269T269IaCaaTa22AY.550.001835
ORF1ab/nsp4269T269TacAacG22AY.9.20.000073
ORF1ab/nsp4269T269KaCaaAa22B0.000256
ORF1ab/nsp4269T269KaCaaAa22B.10.000018
ORF1ab/nsp4269T269delACA---22B.1.10.000036
ORF1ab/nsp4269T269TacAacG22B.1.1.1110.029412
ORF1ab/nsp4269T269IaCaaTa22B.1.1.1570.001826
ORF1ab/nsp4269T269IaCaaTa22B.1.1.2140.000111
ORF1ab/nsp4269T269IaCaaTa22B.1.1.2940.002532
ORF1ab/nsp4269T269IaCaaTa22B.1.1.3690.000892
ORF1ab/nsp4269T269del2ACA--N22B.1.1.70.000002
ORF1ab/nsp4269T269TacAacG12B.1.1770.000013
ORF1ab/nsp4269T269TacAacC12B.1.1770.000013
ORF1ab/nsp4269T269IaCaaTa22B.1.177.810.000379
ORF1ab/nsp4269T269IaCaaTa22B.1.2340.000264
ORF1ab/nsp4269T269TacAacG22B.1.3110.000549
ORF1ab/nsp4269T269IaCaaTa22B.1.3690.00057
ORF1ab/nsp4269T269IaCaaTa22B.1.4090.001563
ORF1ab/nsp4269T269AAcaGca22B.1.4290.000047
ORF1ab/nsp4269T269IaCaaTa22B.1.438.10.000215
ORF1ab/nsp4269T269TacAacC22B.1.4590.008163
ORF1ab/nsp4269T269IaCaaTa22B.1.466.20.000782
ORF1ab/nsp4269T269IaCaaTa22B.1.5640.000852
ORF1ab/nsp4269T269KaCaaAa22B.1.617.20.000008
ORF1ab/nsp4269T269delACA---22B.1.617.20.000008
ORF1ab/nsp4269T269del1aCaa-a22B.1.6270.00404
ORF1ab/nsp4269T269IaCaaTa22B.1.6370.000146
ORF1ab/nsp4269T269KaCaaAa22B.60.00182
ORF1ab/nsp4269T269IaCaaTa22D.20.00015
ORF1ab/nsp4269T269IaCaaTa22Q.80.00033
ORF1ab/nsp4269T269IaCaaTa11A.23.10.000704
ORF1ab/nsp4269T269TacAacG11AE.10.011364
ORF1ab/nsp4269T269NaCAaAC11All0
ORF1ab/nsp4269T269IaCaaTa11AU.30.00211
ORF1ab/nsp4269T269TacAacG11AY.1000.000046
ORF1ab/nsp4269T269IaCaaTa11AY.1000.000046
ORF1ab/nsp4269T269del2aCAa--11AY.1020.000027
ORF1ab/nsp4269T269IaCaaTa11AY.1180.000063
ORF1ab/nsp4269T269IaCaaTa11AY.1190.000035
ORF1ab/nsp4269T269delACA---11AY.1200.000037
ORF1ab/nsp4269T269IaCaaTa11AY.140.000088
ORF1ab/nsp4269T269AAcaGca11AY.200.000039
ORF1ab/nsp4269T269TacAacG11AY.250.000006
ORF1ab/nsp4269T269IaCaaTa11AY.260.000028
ORF1ab/nsp4269T269delACA---11AY.360.000148
ORF1ab/nsp4269T269IaCaaTa11AY.380.000499
ORF1ab/nsp4269T269NaCAaAC11AY.390.000025
ORF1ab/nsp4269T269IaCaaTa11AY.39.10.00004
ORF1ab/nsp4269T269KaCaaAa11AY.40.000002
ORF1ab/nsp4269T269TacAacT11AY.40.000002
ORF1ab/nsp4269T269delACA---11AY.4.10.000737
ORF1ab/nsp4269T269IaCaaTa11AY.4.30.000842
ORF1ab/nsp4269T269KaCaaAa11AY.430.000004
ORF1ab/nsp4269T269AAcaGca11AY.430.000004
ORF1ab/nsp4269T269KaCaaAa11AY.440.000006
ORF1ab/nsp4269T269TacAacG11AY.440.000006
ORF1ab/nsp4269T269PAcaCca11AY.440.000006
ORF1ab/nsp4269T269IaCaaTa11AY.450.000122
ORF1ab/nsp4269T269AAcaGca11AY.450.000122
ORF1ab/nsp4269T269IaCaaTa11AY.470.000031
ORF1ab/nsp4269T269IaCaaTa11AY.540.000095
ORF1ab/nsp4269T269TacAacG11AY.550.000917
ORF1ab/nsp4269T269IaCaaTa11AY.570.000656
ORF1ab/nsp4269T269KaCaaAa11AY.610.000105
ORF1ab/nsp4269T269KaCaaAa11AY.650.000533
ORF1ab/nsp4269T269IaCaaTa11AY.690.000187
ORF1ab/nsp4269T269IaCaaTa11AY.700.000209
ORF1ab/nsp4269T269RaCaaGa11AY.730.000665
ORF1ab/nsp4269T269IaCaaTa11AY.75.10.00018
ORF1ab/nsp4269T269TacAacG11AY.75.10.00018
ORF1ab/nsp4269T269delACA---11AY.810.001992
ORF1ab/nsp4269T269delACA---11AY.90.000068
ORF1ab/nsp4269T269IaCaaTa11AY.9.10.000084
ORF1ab/nsp4269T269AAcaGca11AY.9.20.000037
ORF1ab/nsp4269T269delACA---11AY.9.20.000037
ORF1ab/nsp4269T269IaCaaTa11AY.910.00073
ORF1ab/nsp4269T269AAcaGca11AY.99.20.000092
ORF1ab/nsp4269T269SAcaTca11B.10.000009
ORF1ab/nsp4269T269SAcaTca11B.1.1.1530.001095
ORF1ab/nsp4269T269IaCaaTa11B.1.1.1530.001095
ORF1ab/nsp4269T269IaCaaTa11B.1.1.1590.004673
ORF1ab/nsp4269T269IaCaaTa11B.1.1.2220.000204
ORF1ab/nsp4269T269delACA---11B.1.1.2320.001815
ORF1ab/nsp4269T269AAcaGca11B.1.1.2410.00207
ORF1ab/nsp4269T269delACA---11B.1.1.3110.000358
ORF1ab/nsp4269T269TacAacG11B.1.1.3180.000302
ORF1ab/nsp4269T269SAcaTca11B.1.1.3310.011628
ORF1ab/nsp4269T269IaCaaTa11B.1.1.3590.027778
ORF1ab/nsp4269T269delACA---11B.1.1.370.000193
ORF1ab/nsp4269T269IaCaaTa11B.1.1.4060.006494
ORF1ab/nsp4269T269IaCaaTa11B.1.1.4090.002833
ORF1ab/nsp4269T269IaCaaTa11B.1.1.410.006329
ORF1ab/nsp4269T269IaCaaTa11B.1.1.4130.006897
ORF1ab/nsp4269T269IaCaaTa11B.1.1.4230.0625
ORF1ab/nsp4269T269IaCaaTa11B.1.1.4330.001425
ORF1ab/nsp4269T269AAcaGca11B.1.1.4480.002033
ORF1ab/nsp4269T269IaCaaTa11B.1.1.630.000386
ORF1ab/nsp4269T269AAcaGca11B.1.1.630.000386
ORF1ab/nsp4269T269RaCaaGa11B.1.1.70.000001
ORF1ab/nsp4269T269IaCaaTa11B.1.1.950.019608
ORF1ab/nsp4269T269TacAacG11B.1.1280.000635
ORF1ab/nsp4269T269delACA---11B.1.1600.000031
ORF1ab/nsp4269T269IaCaaTa11B.1.1670.007812
ORF1ab/nsp4269T269del1Aca-ca11B.1.1770.000013
ORF1ab/nsp4269T269delACA---11B.1.177.170.000821
ORF1ab/nsp4269T269IaCaaTa11B.1.177.40.000211
ORF1ab/nsp4269T269delACA---11B.1.177.510.004566
ORF1ab/nsp4269T269delACA---11B.1.177.540.000606
ORF1ab/nsp4269T269IaCaaTa11B.1.177.550.002331
ORF1ab/nsp4269T269IaCaaTa11B.1.177.570.000281
ORF1ab/nsp4269T269delACA---11B.1.177.600.000218
ORF1ab/nsp4269T269KaCaaAa11B.1.177.70.000165
ORF1ab/nsp4269T269delACA---11B.1.177.810.000189
ORF1ab/nsp4269T269KaCaaAa11B.1.20.000009
ORF1ab/nsp4269T269delACA---11B.1.20.000009
ORF1ab/nsp4269T269LACaTTa11B.1.20.000009
ORF1ab/nsp4269T269TacAacG11B.1.20.000009
ORF1ab/nsp4269T269IaCaaTa11B.1.2210.000071
ORF1ab/nsp4269T269delACA---11B.1.230.006061
ORF1ab/nsp4269T269AAcaGca11B.1.2340.000132
ORF1ab/nsp4269T269IaCaaTa11B.1.2400.000216
ORF1ab/nsp4269T269IaCaaTa11B.1.2580.000067
ORF1ab/nsp4269T269IaCaaTa11B.1.258.140.00098
ORF1ab/nsp4269T269IaCaaTa11B.1.2790.000514
ORF1ab/nsp4269T269IaCaaTa11B.1.3200.001245
ORF1ab/nsp4269T269IaCaaTa11B.1.36.170.000494
ORF1ab/nsp4269T269IaCaaTa11B.1.36.290.000517
ORF1ab/nsp4269T269TacAacT11B.1.4390.005917
ORF1ab/nsp4269T269IaCaaTa11B.1.4590.004082
ORF1ab/nsp4269T269IaCaaTa11B.1.4730.019231
ORF1ab/nsp4269T269IaCaaTa11B.1.4990.00105
ORF1ab/nsp4269T269IaCaaTa11B.1.5090.000866
ORF1ab/nsp4269T269TacAacG11B.1.5170.000427
ORF1ab/nsp4269T269IaCaaTa11B.1.5250.000113
ORF1ab/nsp4269T269IaCaaTa11B.1.5460.003704
ORF1ab/nsp4269T269TacAacG11B.1.5700.002941
ORF1ab/nsp4269T269IaCaaTa11B.1.5810.009434
ORF1ab/nsp4269T269IaCaaTa11B.1.5820.000491
ORF1ab/nsp4269T269KaCaaAa11B.1.5960.000087
ORF1ab/nsp4269T269IaCaaTa11B.1.5960.000087
ORF1ab/nsp4269T269IaCaaTa11B.1.617.10.000129
ORF1ab/nsp4269T269LACaTTa11B.1.617.20.000004
ORF1ab/nsp4269T269del1ACA-NN11B.1.617.20.000004
ORF1ab/nsp4269T269PAcaCca11B.1.617.20.000004
ORF1ab/nsp4269T269LACaCTa11B.1.6230.000536
ORF1ab/nsp4269T269KaCaaAa11B.1.6370.000073
ORF1ab/nsp4269T269delACA---11B.150.017544
ORF1ab/nsp4269T269IaCaaTa11B.30.000831
ORF1ab/nsp4269T269delACA---11B.4.40.018868
ORF1ab/nsp4269T269IaCaaTa11C.300.001727
ORF1ab/nsp4269T269AAcaGca11C.310.017857
ORF1ab/nsp4269T269SaCAaGT11C.350.000774
ORF1ab/nsp4269T269IaCaaTa11C.370.000116
ORF1ab/nsp4269T269IaCaaTa11N.50.001767
ORF1ab/nsp4269T269AAcaGca11P.10.000016
ORF1ab/nsp4269T269delACA---11P.10.000016
ORF1ab/nsp4269T269IaCaaTa11P.1.70.000319
ORF1ab/nsp4269T269delACA---11Q.10.000126