CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 255

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4255F255FF3018FsynttCttT103501035019317-9319
ORF1ab/nsp4255F255LF3018LnonsynttCttA90480.5333339317-9319
ORF1ab/nsp4255F255LF3018LnonsynTtcCtc90420.4666679317-9319
ORF1ab/nsp4255F255delF3018deldelTTC---767619317-9319
ORF1ab/nsp4255F255SF3018SnonsyntTctCc20190.959317-9319
ORF1ab/nsp4255F255SF3018SnonsyntTCtCT2010.059317-9319
ORF1ab/nsp4255F255del1F3018del1delttCtt-111119317-9319
ORF1ab/nsp4255F255VF3018VnonsynTtcGtc9919317-9319
ORF1ab/nsp4255F255CF3018CnonsyntTctGc4419317-9319
ORF1ab/nsp4255F255YF3018YnonsyntTctAc4419317-9319
ORF1ab/nsp4255F255IF3018InonsynTtcAtc2219317-9319

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4255F255FttCttT1035010350All0.00198
ORF1ab/nsp4255F255FttCttT24822482AY.300.982192
ORF1ab/nsp4255F255FttCttT15551555B.1.619.10.997434
ORF1ab/nsp4255F255FttCttT11091109B.1.6190.966028
ORF1ab/nsp4255F255FttCttT711711B.1.1.4320.9
ORF1ab/nsp4255F255FttCttT656656AY.40.001021
ORF1ab/nsp4255F255FttCttT501501B.1.617.20.001886
ORF1ab/nsp4255F255FttCttT475475AY.230.033131
ORF1ab/nsp4255F255FttCttT423423B.1.1.70.000379
ORF1ab/nsp4255F255FttCttT311311B.1.20.002738
ORF1ab/nsp4255F255FttCttT165165B.1.5750.050061
ORF1ab/nsp4255F255FttCttT150150AY.200.00583
ORF1ab/nsp4255F255FttCttT127127AY.4.20.002754
ORF1ab/nsp4255F255FttCttT112112AY.540.010679
ORF1ab/nsp4255F255FttCttT109109B.10.000998
ORF1ab/nsp4255F255FttCttT9393P.10.001465
ORF1ab/nsp4255F255LttCttA4890All0.000009
ORF1ab/nsp4255F255LTtcCtc4290All0.000008
ORF1ab/nsp4255F255FttCttT7777B.1.4290.001812
ORF1ab/nsp4255F255delTTC---7676All0.000015
ORF1ab/nsp4255F255FttCttT7676AY.250.000457
ORF1ab/nsp4255F255FttCttT7070AY.1030.000435
ORF1ab/nsp4255F255FttCttT6767B.1.1.2140.003716
ORF1ab/nsp4255F255FttCttT6363AY.30.000627
ORF1ab/nsp4255F255FttCttT5959AY.430.000261
ORF1ab/nsp4255F255FttCttT5252AY.330.003472
ORF1ab/nsp4255F255FttCttT5252B.1.177.580.069241
ORF1ab/nsp4255F255FttCttT5151B.1.5260.001199
ORF1ab/nsp4255F255FttCttT5151B.4.40.962264
ORF1ab/nsp4255F255FttCttT4747AY.850.020077
ORF1ab/nsp4255F255delTTC---3333B.1.1.70.00003
ORF1ab/nsp4255F255FttCttT3232B.1.1.10.010454
ORF1ab/nsp4255F255FttCttT3030B.1.10.000544
ORF1ab/nsp4255F255FttCttT2626AY.390.000642
ORF1ab/nsp4255F255FttCttT2626AY.910.018992
ORF1ab/nsp4255F255FttCttT2424AY.260.000679
ORF1ab/nsp4255F255FttCttT2222AY.440.000134
ORF1ab/nsp4255F255StTctCc1920All0.000004
ORF1ab/nsp4255F255StTCtCT120All0
ORF1ab/nsp4255F255FttCttT2020B.1.1600.000624
ORF1ab/nsp4255F255FttCttT1919AY.7.10.002141
ORF1ab/nsp4255F255FttCttT1818B.1.5960.001568
ORF1ab/nsp4255F255LTtcCtc1317B.1.1.70.000012
ORF1ab/nsp4255F255LttCttA417B.1.1.70.000004
ORF1ab/nsp4255F255FttCttT1616AY.1020.000424
ORF1ab/nsp4255F255FttCttT1616B.1.1.3970.036036
ORF1ab/nsp4255F255FttCttT1616B.1.3510.000476
ORF1ab/nsp4255F255LttCttA1616B.1.4270.000808
ORF1ab/nsp4255F255FttCttT1414AY.1010.006866
ORF1ab/nsp4255F255FttCttT1212B.1.214.20.007194
ORF1ab/nsp4255F255del1ttCtt-1111All0.000002
ORF1ab/nsp4255F255FttCttT1111AY.670.005107
ORF1ab/nsp4255F255FttCttT1111B.1.2580.000732
ORF1ab/nsp4255F255VTtcGtc99All0.000002
ORF1ab/nsp4255F255FttCttT99AY.1190.000318
ORF1ab/nsp4255F255FttCttT99B.1.1770.000119
ORF1ab/nsp4255F255LTtcCtc99B.1.20.000079
ORF1ab/nsp4255F255FttCttT99C.370.001045
ORF1ab/nsp4255F255StTctCc88AY.40.000012
ORF1ab/nsp4255F255FttCttT88AY.470.000249
ORF1ab/nsp4255F255FttCttT88B0.001022
ORF1ab/nsp4255F255FttCttT88B.1.1.4350.275862
ORF1ab/nsp4255F255FttCttT88B.1.2430.000557
ORF1ab/nsp4255F255FttCttT77AY.1000.000322
ORF1ab/nsp4255F255FttCttT77AY.420.000282
ORF1ab/nsp4255F255FttCttT77AY.450.000852
ORF1ab/nsp4255F255FttCttT77AY.620.00305
ORF1ab/nsp4255F255LTtcCtc47B.10.000037
ORF1ab/nsp4255F255LttCttA37B.10.000027
ORF1ab/nsp4255F255FttCttT66AY.1200.000223
ORF1ab/nsp4255F255delTTC---66AY.40.000009
ORF1ab/nsp4255F255FttCttT66AY.460.000624
ORF1ab/nsp4255F255LttCttA66AY.570.003937
ORF1ab/nsp4255F255FttCttT66AY.750.000336
ORF1ab/nsp4255F255FttCttT66AY.99.20.000553
ORF1ab/nsp4255F255FttCttT66B.1.1.2220.001224
ORF1ab/nsp4255F255FttCttT66B.1.1.4160.00543
ORF1ab/nsp4255F255FttCttT66B.1.1.5190.000238
ORF1ab/nsp4255F255FttCttT66B.1.177.840.04
ORF1ab/nsp4255F255FttCttT66B.1.360.000875
ORF1ab/nsp4255F255FttCttT66B.1.4000.002574
ORF1ab/nsp4255F255FttCttT66B.1.6370.000438
ORF1ab/nsp4255F255FttCttT66D.20.00045
ORF1ab/nsp4255F255delTTC---55B.1.1770.000066
ORF1ab/nsp4255F255del1ttCtt-55B.1.617.20.000019
ORF1ab/nsp4255F255FttCttT55P.20.000933
ORF1ab/nsp4255F255YtTctAc44All0.000001
ORF1ab/nsp4255F255CtTctGc44All0.000001
ORF1ab/nsp4255F255FttCttT44AY.1170.000338
ORF1ab/nsp4255F255FttCttT44AY.290.000063
ORF1ab/nsp4255F255FttCttT44AY.3.10.000341
ORF1ab/nsp4255F255FttCttT44AY.39.10.000158
ORF1ab/nsp4255F255delTTC---44AY.4.50.00043
ORF1ab/nsp4255F255FttCttT44AY.46.60.000289
ORF1ab/nsp4255F255FttCttT44AY.490.01278
ORF1ab/nsp4255F255FttCttT44AY.650.002132
ORF1ab/nsp4255F255FttCttT44AY.980.000316
ORF1ab/nsp4255F255VTtcGtc44B.1.1.390.002039
ORF1ab/nsp4255F255FttCttT44B.1.438.10.000429
ORF1ab/nsp4255F255FttCttT44B.1.4690.01444
ORF1ab/nsp4255F255LttCttA44B.1.5950.001044
ORF1ab/nsp4255F255FttCttT44P.1.140.000191
ORF1ab/nsp4255F255LttCttA33AY.1030.000019
ORF1ab/nsp4255F255FttCttT33AY.1110.000549
ORF1ab/nsp4255F255FttCttT33AY.1130.000427
ORF1ab/nsp4255F255FttCttT33AY.160.001139
ORF1ab/nsp4255F255FttCttT33AY.16.10.00141
ORF1ab/nsp4255F255FttCttT33AY.280.005671
ORF1ab/nsp4255F255FttCttT33AY.320.001597
ORF1ab/nsp4255F255LTtcCtc33AY.40.000005
ORF1ab/nsp4255F255FttCttT33AY.610.000314
ORF1ab/nsp4255F255FttCttT33AY.98.10.000145
ORF1ab/nsp4255F255FttCttT33B.1.1.1960.017143
ORF1ab/nsp4255F255FttCttT33B.1.1.2440.046154
ORF1ab/nsp4255F255FttCttT33B.1.1.500.002037
ORF1ab/nsp4255F255FttCttT33B.1.258.170.000312
ORF1ab/nsp4255F255FttCttT33B.1.258.240.032258
ORF1ab/nsp4255F255FttCttT33B.1.3240.004815
ORF1ab/nsp4255F255FttCttT33B.1.3320.01049
ORF1ab/nsp4255F255LTtcCtc33B.1.4290.000071
ORF1ab/nsp4255F255FttCttT33B.1.466.20.001174
ORF1ab/nsp4255F255FttCttT33B.1.6210.000266
ORF1ab/nsp4255F255FttCttT33B.40.006623
ORF1ab/nsp4255F255FttCttT22A.2.50.000998
ORF1ab/nsp4255F255ITtcAtc22All0
ORF1ab/nsp4255F255delTTC---22AY.1110.000366
ORF1ab/nsp4255F255VTtcGtc22AY.1140.000462
ORF1ab/nsp4255F255FttCttT22AY.1160.000574
ORF1ab/nsp4255F255FttCttT22AY.1180.000125
ORF1ab/nsp4255F255FttCttT22AY.1210.000271
ORF1ab/nsp4255F255FttCttT22AY.190.002281
ORF1ab/nsp4255F255del1ttCtt-22AY.230.000139
ORF1ab/nsp4255F255LTtcCtc22AY.250.000012
ORF1ab/nsp4255F255FttCttT22AY.360.000296
ORF1ab/nsp4255F255FttCttT22AY.46.40.000329
ORF1ab/nsp4255F255FttCttT22AY.50.000041
ORF1ab/nsp4255F255FttCttT22AY.530.000575
ORF1ab/nsp4255F255FttCttT22AY.590.001059
ORF1ab/nsp4255F255FttCttT22AY.60.000082
ORF1ab/nsp4255F255FttCttT22AY.75.10.000361
ORF1ab/nsp4255F255FttCttT22AY.9.20.000073
ORF1ab/nsp4255F255delTTC---22B.1.10.000036
ORF1ab/nsp4255F255LTtcCtc12B.1.10.000018
ORF1ab/nsp4255F255LttCttA12B.1.10.000018
ORF1ab/nsp4255F255FttCttT22B.1.1.280.000622
ORF1ab/nsp4255F255delTTC---22B.1.1.3110.000716
ORF1ab/nsp4255F255FttCttT22B.1.1.330.000842
ORF1ab/nsp4255F255FttCttT22B.1.1.3720.001377
ORF1ab/nsp4255F255FttCttT22B.1.1.4340.000697
ORF1ab/nsp4255F255FttCttT22B.1.2210.000142
ORF1ab/nsp4255F255FttCttT22B.1.2320.001075
ORF1ab/nsp4255F255LTtcCtc22B.1.2430.000139
ORF1ab/nsp4255F255FttCttT22B.1.36.290.001035
ORF1ab/nsp4255F255FttCttT22B.1.36.80.002
ORF1ab/nsp4255F255FttCttT22B.1.3620.003082
ORF1ab/nsp4255F255FttCttT22B.1.5610.000794
ORF1ab/nsp4255F255LTtcCtc22B.1.5960.000174
ORF1ab/nsp4255F255FttCttT22B.1.6090.000959
ORF1ab/nsp4255F255delTTC---22B.1.617.20.000008
ORF1ab/nsp4255F255YtTctAc22B.1.617.20.000008
ORF1ab/nsp4255F255FttCttT22B.1.6280.000705
ORF1ab/nsp4255F255FttCttT22C.350.001548
ORF1ab/nsp4255F255FttCttT22C.40.02
ORF1ab/nsp4255F255StTctCc22D.20.00015
ORF1ab/nsp4255F255LttCttA22P.10.000032
ORF1ab/nsp4255F255FttCttT22P.1.120.000968
ORF1ab/nsp4255F255FttCttT22P.1.150.000465
ORF1ab/nsp4255F255FttCttT22Q.80.00033
ORF1ab/nsp4255F255LttCttA110.055556
ORF1ab/nsp4255F255LttCttA11A0.000387
ORF1ab/nsp4255F255FttCttT11AT.10.005128
ORF1ab/nsp4255F255FttCttT11AY.10.000396
ORF1ab/nsp4255F255LttCttA11AY.1020.000027
ORF1ab/nsp4255F255delTTC---11AY.1030.000006
ORF1ab/nsp4255F255FttCttT11AY.1100.000113
ORF1ab/nsp4255F255StTctCc11AY.1180.000063
ORF1ab/nsp4255F255delTTC---11AY.1200.000037
ORF1ab/nsp4255F255FttCttT11AY.120.10.000321
ORF1ab/nsp4255F255FttCttT11AY.140.000088
ORF1ab/nsp4255F255FttCttT11AY.240.000431
ORF1ab/nsp4255F255LttCttA11AY.240.000431
ORF1ab/nsp4255F255StTctCc11AY.30.00001
ORF1ab/nsp4255F255VTtcGtc11AY.330.000067
ORF1ab/nsp4255F255delTTC---11AY.360.000148
ORF1ab/nsp4255F255LTtcCtc11AY.360.000148
ORF1ab/nsp4255F255FttCttT11AY.370.000316
ORF1ab/nsp4255F255FttCttT11AY.380.000499
ORF1ab/nsp4255F255LTtcCtc11AY.390.000025
ORF1ab/nsp4255F255delTTC---11AY.4.10.000737
ORF1ab/nsp4255F255FttCttT11AY.4.30.000842
ORF1ab/nsp4255F255del1ttCtt-11AY.400.000964
ORF1ab/nsp4255F255FttCttT11AY.400.000964
ORF1ab/nsp4255F255LttCttA11AY.430.000004
ORF1ab/nsp4255F255ITtcAtc11AY.440.000006
ORF1ab/nsp4255F255FttCttT11AY.46.20.000635
ORF1ab/nsp4255F255FttCttT11AY.46.30.000934
ORF1ab/nsp4255F255FttCttT11AY.480.000465
ORF1ab/nsp4255F255StTCtCT11AY.480.000465
ORF1ab/nsp4255F255FttCttT11AY.5.30.000337
ORF1ab/nsp4255F255FttCttT11AY.550.000917
ORF1ab/nsp4255F255FttCttT11AY.580.000907
ORF1ab/nsp4255F255FttCttT11AY.680.000274
ORF1ab/nsp4255F255VTtcGtc11AY.710.000475
ORF1ab/nsp4255F255FttCttT11AY.770.001127
ORF1ab/nsp4255F255delTTC---11AY.810.001992
ORF1ab/nsp4255F255FttCttT11AY.90.000068
ORF1ab/nsp4255F255delTTC---11AY.90.000068
ORF1ab/nsp4255F255delTTC---11AY.9.20.000037
ORF1ab/nsp4255F255StTctCc11AY.910.00073
ORF1ab/nsp4255F255FttCttT11AY.920.000287
ORF1ab/nsp4255F255CtTctGc11B.10.000009
ORF1ab/nsp4255F255StTctCc11B.10.000009
ORF1ab/nsp4255F255delTTC---11B.10.000009
ORF1ab/nsp4255F255FttCttT11B.1.1.100.001115
ORF1ab/nsp4255F255FttCttT11B.1.1.1740.003378
ORF1ab/nsp4255F255VTtcGtc11B.1.1.1940.00495
ORF1ab/nsp4255F255FttCttT11B.1.1.1980.001468
ORF1ab/nsp4255F255FttCttT11B.1.1.2200.001859
ORF1ab/nsp4255F255delTTC---11B.1.1.2320.001815
ORF1ab/nsp4255F255FttCttT11B.1.1.2550.00303
ORF1ab/nsp4255F255FttCttT11B.1.1.2800.003086
ORF1ab/nsp4255F255FttCttT11B.1.1.2840.000107
ORF1ab/nsp4255F255FttCttT11B.1.1.2900.018182
ORF1ab/nsp4255F255LttCttA11B.1.1.3340.016393
ORF1ab/nsp4255F255FttCttT11B.1.1.370.000193
ORF1ab/nsp4255F255delTTC---11B.1.1.370.000193
ORF1ab/nsp4255F255FttCttT11B.1.1.3950.055556
ORF1ab/nsp4255F255FttCttT11B.1.1.4090.002833
ORF1ab/nsp4255F255FttCttT11B.1.1.460.004367
ORF1ab/nsp4255F255StTctCc11B.1.1.70.000001
ORF1ab/nsp4255F255del1ttCtt-11B.1.1.70.000001
ORF1ab/nsp4255F255FttCttT11B.1.1.890.006061
ORF1ab/nsp4255F255FttCttT11B.1.1570.002985
ORF1ab/nsp4255F255YtTctAc11B.1.1770.000013
ORF1ab/nsp4255F255del1ttCtt-11B.1.1770.000013
ORF1ab/nsp4255F255LTtcCtc11B.1.1770.000013
ORF1ab/nsp4255F255FttCttT11B.1.177.160.000664
ORF1ab/nsp4255F255FttCttT11B.1.177.170.000821
ORF1ab/nsp4255F255delTTC---11B.1.177.170.000821
ORF1ab/nsp4255F255FttCttT11B.1.177.180.00116
ORF1ab/nsp4255F255LttCttA11B.1.177.190.001431
ORF1ab/nsp4255F255FttCttT11B.1.177.40.000211
ORF1ab/nsp4255F255FttCttT11B.1.177.460.000918
ORF1ab/nsp4255F255delTTC---11B.1.177.510.004566
ORF1ab/nsp4255F255delTTC---11B.1.177.540.000606
ORF1ab/nsp4255F255delTTC---11B.1.177.600.000218
ORF1ab/nsp4255F255FttCttT11B.1.177.650.000665
ORF1ab/nsp4255F255FttCttT11B.1.177.730.000566
ORF1ab/nsp4255F255delTTC---11B.1.177.810.000189
ORF1ab/nsp4255F255CtTctGc11B.1.177.860.000183
ORF1ab/nsp4255F255delTTC---11B.1.20.000009
ORF1ab/nsp4255F255StTctCc11B.1.20.000009
ORF1ab/nsp4255F255FttCttT11B.1.221.10.002907
ORF1ab/nsp4255F255delTTC---11B.1.230.006061
ORF1ab/nsp4255F255FttCttT11B.1.2340.000132
ORF1ab/nsp4255F255StTctCc11B.1.2430.00007
ORF1ab/nsp4255F255FttCttT11B.1.2760.016949
ORF1ab/nsp4255F255StTctCc11B.1.3510.00003
ORF1ab/nsp4255F255FttCttT11B.1.3670.000792
ORF1ab/nsp4255F255FttCttT11B.1.3830.009009
ORF1ab/nsp4255F255FttCttT11B.1.4160.001269
ORF1ab/nsp4255F255FttCttT11B.1.4260.001009
ORF1ab/nsp4255F255FttCttT11B.1.4270.00005
ORF1ab/nsp4255F255FttCttT11B.1.4620.007246
ORF1ab/nsp4255F255FttCttT11B.1.4800.002488
ORF1ab/nsp4255F255FttCttT11B.1.5090.000866
ORF1ab/nsp4255F255FttCttT11B.1.5250.000113
ORF1ab/nsp4255F255CtTctGc11B.1.5260.000024
ORF1ab/nsp4255F255FttCttT11B.1.5270.003704
ORF1ab/nsp4255F255FttCttT11B.1.5330.009615
ORF1ab/nsp4255F255FttCttT11B.1.5450.014493
ORF1ab/nsp4255F255FttCttT11B.1.5640.000426
ORF1ab/nsp4255F255LttCttA11B.1.5640.000426
ORF1ab/nsp4255F255FttCttT11B.1.564.10.001577
ORF1ab/nsp4255F255FttCttT11B.1.5950.000261
ORF1ab/nsp4255F255StTctCc11B.1.5960.000087
ORF1ab/nsp4255F255FttCttT11B.1.617.10.000129
ORF1ab/nsp4255F255LttCttA11B.1.617.20.000004
ORF1ab/nsp4255F255CtTctGc11B.1.617.20.000004
ORF1ab/nsp4255F255ITtcAtc11B.1.617.20.000004
ORF1ab/nsp4255F255FttCttT11B.1.6180.004032
ORF1ab/nsp4255F255del1ttCtt-11B.1.6190.000871
ORF1ab/nsp4255F255FttCttT11B.1.6310.003367
ORF1ab/nsp4255F255FttCttT11B.1.6340.003425
ORF1ab/nsp4255F255FttCttT11B.1.780.008547
ORF1ab/nsp4255F255delTTC---11B.150.017544
ORF1ab/nsp4255F255YtTctAc11B.40.002208
ORF1ab/nsp4255F255delTTC---11B.4.40.018868
ORF1ab/nsp4255F255FttCttT11B.60.00091
ORF1ab/nsp4255F255FttCttT11B.610.005747
ORF1ab/nsp4255F255FttCttT11C.10.002392
ORF1ab/nsp4255F255FttCttT11C.170.055556
ORF1ab/nsp4255F255delTTC---11P.10.000016
ORF1ab/nsp4255F255FttCttT11P.1.170.000162
ORF1ab/nsp4255F255FttCttT11P.1.20.001156
ORF1ab/nsp4255F255FttCttT11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.