CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 255 | F255F | F3018F | syn | ttC | ttT | 10350 | 10350 | 1 | 9317-9319 |
ORF1ab/nsp4 | 255 | F255L | F3018L | nonsyn | ttC | ttA | 90 | 48 | 0.533333 | 9317-9319 |
ORF1ab/nsp4 | 255 | F255L | F3018L | nonsyn | Ttc | Ctc | 90 | 42 | 0.466667 | 9317-9319 |
ORF1ab/nsp4 | 255 | F255del | F3018del | del | TTC | --- | 76 | 76 | 1 | 9317-9319 |
ORF1ab/nsp4 | 255 | F255S | F3018S | nonsyn | tTc | tCc | 20 | 19 | 0.95 | 9317-9319 |
ORF1ab/nsp4 | 255 | F255S | F3018S | nonsyn | tTC | tCT | 20 | 1 | 0.05 | 9317-9319 |
ORF1ab/nsp4 | 255 | F255del1 | F3018del1 | del | ttC | tt- | 11 | 11 | 1 | 9317-9319 |
ORF1ab/nsp4 | 255 | F255V | F3018V | nonsyn | Ttc | Gtc | 9 | 9 | 1 | 9317-9319 |
ORF1ab/nsp4 | 255 | F255C | F3018C | nonsyn | tTc | tGc | 4 | 4 | 1 | 9317-9319 |
ORF1ab/nsp4 | 255 | F255Y | F3018Y | nonsyn | tTc | tAc | 4 | 4 | 1 | 9317-9319 |
ORF1ab/nsp4 | 255 | F255I | F3018I | nonsyn | Ttc | Atc | 2 | 2 | 1 | 9317-9319 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 10350 | 10350 | All | 0.00198 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2482 | 2482 | AY.30 | 0.982192 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1555 | 1555 | B.1.619.1 | 0.997434 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1109 | 1109 | B.1.619 | 0.966028 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 711 | 711 | B.1.1.432 | 0.9 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 656 | 656 | AY.4 | 0.001021 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 501 | 501 | B.1.617.2 | 0.001886 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 475 | 475 | AY.23 | 0.033131 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 423 | 423 | B.1.1.7 | 0.000379 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 311 | 311 | B.1.2 | 0.002738 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 165 | 165 | B.1.575 | 0.050061 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 150 | 150 | AY.20 | 0.00583 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 127 | 127 | AY.4.2 | 0.002754 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 112 | 112 | AY.54 | 0.010679 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 109 | 109 | B.1 | 0.000998 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 93 | 93 | P.1 | 0.001465 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 48 | 90 | All | 0.000009 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 42 | 90 | All | 0.000008 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 77 | 77 | B.1.429 | 0.001812 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 76 | 76 | All | 0.000015 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 76 | 76 | AY.25 | 0.000457 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 70 | 70 | AY.103 | 0.000435 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 67 | 67 | B.1.1.214 | 0.003716 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 63 | 63 | AY.3 | 0.000627 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 59 | 59 | AY.43 | 0.000261 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 52 | 52 | AY.33 | 0.003472 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 52 | 52 | B.1.177.58 | 0.069241 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 51 | 51 | B.1.526 | 0.001199 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 51 | 51 | B.4.4 | 0.962264 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 47 | 47 | AY.85 | 0.020077 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 33 | 33 | B.1.1.7 | 0.00003 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 32 | 32 | B.1.1.1 | 0.010454 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 30 | 30 | B.1.1 | 0.000544 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 26 | 26 | AY.39 | 0.000642 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 26 | 26 | AY.91 | 0.018992 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 24 | 24 | AY.26 | 0.000679 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 22 | 22 | AY.44 | 0.000134 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 19 | 20 | All | 0.000004 |
ORF1ab/nsp4 | 255 | F255S | tTC | tCT | 1 | 20 | All | 0 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 20 | 20 | B.1.160 | 0.000624 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 19 | 19 | AY.7.1 | 0.002141 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 18 | 18 | B.1.596 | 0.001568 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 13 | 17 | B.1.1.7 | 0.000012 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 4 | 17 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 16 | 16 | AY.102 | 0.000424 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 16 | 16 | B.1.1.397 | 0.036036 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 16 | 16 | B.1.351 | 0.000476 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 14 | 14 | AY.101 | 0.006866 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 12 | 12 | B.1.214.2 | 0.007194 |
ORF1ab/nsp4 | 255 | F255del1 | ttC | tt- | 11 | 11 | All | 0.000002 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 11 | 11 | AY.67 | 0.005107 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp4 | 255 | F255V | Ttc | Gtc | 9 | 9 | All | 0.000002 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 8 | 8 | B | 0.001022 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 8 | 8 | B.1.1.435 | 0.275862 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 8 | 8 | B.1.243 | 0.000557 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 7 | 7 | AY.42 | 0.000282 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 7 | 7 | AY.62 | 0.00305 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 4 | 7 | B.1 | 0.000037 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 3 | 7 | B.1 | 0.000027 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 6 | 6 | AY.57 | 0.003937 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | B.1.1.416 | 0.00543 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | B.1.177.84 | 0.04 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | B.1.400 | 0.002574 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 6 | 6 | D.2 | 0.00045 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp4 | 255 | F255del1 | ttC | tt- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp4 | 255 | F255Y | tTc | tAc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp4 | 255 | F255C | tTc | tGc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | AY.3.1 | 0.000341 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | AY.46.6 | 0.000289 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | AY.49 | 0.01278 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | AY.65 | 0.002132 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp4 | 255 | F255V | Ttc | Gtc | 4 | 4 | B.1.1.39 | 0.002039 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | B.1.469 | 0.01444 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 4 | 4 | P.1.14 | 0.000191 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | AY.28 | 0.005671 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | B.1.1.196 | 0.017143 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | B.1.1.244 | 0.046154 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | B.1.258.24 | 0.032258 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | B.1.324 | 0.004815 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | B.1.332 | 0.01049 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | B.1.466.2 | 0.001174 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 3 | 3 | B.4 | 0.006623 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp4 | 255 | F255I | Ttc | Atc | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp4 | 255 | F255V | Ttc | Gtc | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp4 | 255 | F255del1 | ttC | tt- | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 1 | 2 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 255 | F255Y | tTc | tAc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | C.4 | 0.02 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 255 | F255V | Ttc | Gtc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp4 | 255 | F255del1 | ttC | tt- | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 255 | F255I | Ttc | Atc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp4 | 255 | F255S | tTC | tCT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 255 | F255V | Ttc | Gtc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp4 | 255 | F255C | tTc | tGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp4 | 255 | F255V | Ttc | Gtc | 1 | 1 | B.1.1.194 | 0.00495 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.290 | 0.018182 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.395 | 0.055556 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 255 | F255del1 | ttC | tt- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp4 | 255 | F255Y | tTc | tAc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 255 | F255del1 | ttC | tt- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 255 | F255L | Ttc | Ctc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 255 | F255C | tTc | tGc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.276 | 0.016949 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 255 | F255C | tTc | tGc | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 255 | F255S | tTc | tCc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 255 | F255L | ttC | ttA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 255 | F255C | tTc | tGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 255 | F255I | Ttc | Atc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp4 | 255 | F255del1 | ttC | tt- | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 255 | F255Y | tTc | tAc | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | B.4.4 | 0.018868 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | B.61 | 0.005747 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp4 | 255 | F255del | TTC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp4 | 255 | F255F | ttC | ttT | 1 | 1 | P.1.7 | 0.000319 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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