CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 245 & Codon = aaC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4245N245NN3008NsynaaTaaC1047104719287-9289

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4245N245NaaTaaC10471047All0.0002
ORF1ab/nsp4245N245NaaTaaC547547C.300.944732
ORF1ab/nsp4245N245NaaTaaC168168B.1.1.5190.006671
ORF1ab/nsp4245N245NaaTaaC149149C.30.11
ORF1ab/nsp4245N245NaaTaaC4646AY.50.00095
ORF1ab/nsp4245N245NaaTaaC3030B.1.1.70.000027
ORF1ab/nsp4245N245NaaTaaC2929B.1.617.20.000109
ORF1ab/nsp4245N245NaaTaaC1010B.1.3510.000297
ORF1ab/nsp4245N245NaaTaaC99B.10.000082
ORF1ab/nsp4245N245NaaTaaC88AY.430.000035
ORF1ab/nsp4245N245NaaTaaC88AY.440.000049
ORF1ab/nsp4245N245NaaTaaC44AY.200.000155
ORF1ab/nsp4245N245NaaTaaC44B.1.20.000035
ORF1ab/nsp4245N245NaaTaaC33AY.1030.000019
ORF1ab/nsp4245N245NaaTaaC33B.1.10.000054
ORF1ab/nsp4245N245NaaTaaC33B.1.1.3110.001074
ORF1ab/nsp4245N245NaaTaaC22AY.250.000012
ORF1ab/nsp4245N245NaaTaaC22AY.390.000049
ORF1ab/nsp4245N245NaaTaaC22D.20.00015
ORF1ab/nsp4245N245NaaTaaC11A.30.002096
ORF1ab/nsp4245N245NaaTaaC11AY.120.2.10.000498
ORF1ab/nsp4245N245NaaTaaC11AY.130.000161
ORF1ab/nsp4245N245NaaTaaC11AY.290.000016
ORF1ab/nsp4245N245NaaTaaC11AY.420.00004
ORF1ab/nsp4245N245NaaTaaC11AY.510.000909
ORF1ab/nsp4245N245NaaTaaC11AY.750.000056
ORF1ab/nsp4245N245NaaTaaC11AZ.30.00152
ORF1ab/nsp4245N245NaaTaaC11B0.000128
ORF1ab/nsp4245N245NaaTaaC11B.1.1.2140.000055
ORF1ab/nsp4245N245NaaTaaC11B.1.1.3720.000689
ORF1ab/nsp4245N245NaaTaaC11B.1.2210.000071
ORF1ab/nsp4245N245NaaTaaC11B.1.3690.000285
ORF1ab/nsp4245N245NaaTaaC11B.1.4290.000024
ORF1ab/nsp4245N245NaaTaaC11B.1.5820.000491
ORF1ab/nsp4245N245NaaTaaC11B.1.5880.00091
ORF1ab/nsp4245N245NaaTaaC11B.1.5960.000087
ORF1ab/nsp4245N245NaaTaaC11P.10.000016
ORF1ab/nsp4245N245NaaTaaC11P.1.120.000484
ORF1ab/nsp4245N245NaaTaaC11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.