CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 244

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4244N244NN3007NsynaaCaaT176691766919284-9286
ORF1ab/nsp4244N244KN3007KnonsynaaCaaA59560.9491539284-9286
ORF1ab/nsp4244N244KN3007KnonsynaaCaaG5930.05084759284-9286
ORF1ab/nsp4244N244delN3007deldelAAC---474719284-9286
ORF1ab/nsp4244N244SN3007SnonsynaAcaGc353519284-9286
ORF1ab/nsp4244N244DN3007DnonsynAacGac181819284-9286
ORF1ab/nsp4244N244YN3007YnonsynAacTac3319284-9286
ORF1ab/nsp4244N244IN3007InonsynaAcaTc3319284-9286
ORF1ab/nsp4244N244del1N3007del1delAAc-Gc320.6666679284-9286
ORF1ab/nsp4244N244del1N3007del1delAac-ac310.3333339284-9286
ORF1ab/nsp4244N244del2N3007del2delAAc--c210.59284-9286
ORF1ab/nsp4244N244del2N3007del2delaACa--210.59284-9286
ORF1ab/nsp4244N244TN3007TnonsynaAcaCc1119284-9286

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4244N244NaaCaaT1766917669All0.003379
ORF1ab/nsp4244N244NaaCaaT93119311B.1.1.2841
ORF1ab/nsp4244N244NaaCaaT18141814B.1.1.70.001624
ORF1ab/nsp4244N244NaaCaaT11791179AY.320.627796
ORF1ab/nsp4244N244NaaCaaT515515AY.40.000802
ORF1ab/nsp4244N244NaaCaaT391391AY.440.00238
ORF1ab/nsp4244N244NaaCaaT323323B.1.617.20.001216
ORF1ab/nsp4244N244NaaCaaT272272B.1.4290.0064
ORF1ab/nsp4244N244NaaCaaT227227AY.430.001006
ORF1ab/nsp4244N244NaaCaaT217217B.1.10.003937
ORF1ab/nsp4244N244NaaCaaT179179B.1.1.470.957219
ORF1ab/nsp4244N244NaaCaaT163163B.1.5260.003831
ORF1ab/nsp4244N244NaaCaaT160160AY.200.006218
ORF1ab/nsp4244N244NaaCaaT152152AY.1030.000944
ORF1ab/nsp4244N244NaaCaaT145145B.1.20.001277
ORF1ab/nsp4244N244NaaCaaT138138B.10.001264
ORF1ab/nsp4244N244NaaCaaT132132AY.30.001313
ORF1ab/nsp4244N244NaaCaaT117117C.380.943548
ORF1ab/nsp4244N244NaaCaaT111111B.1.466.20.043427
ORF1ab/nsp4244N244NaaCaaT105105AY.250.000632
ORF1ab/nsp4244N244NaaCaaT104104B.1.1770.001369
ORF1ab/nsp4244N244NaaCaaT8989P.10.001402
ORF1ab/nsp4244N244NaaCaaT8787B.1.4270.004393
ORF1ab/nsp4244N244NaaCaaT6363AY.140.005545
ORF1ab/nsp4244N244KaaCaaA5659All0.000011
ORF1ab/nsp4244N244KaaCaaG359All0.000001
ORF1ab/nsp4244N244NaaCaaT5858B.1.1600.001809
ORF1ab/nsp4244N244NaaCaaT5252AM.40.185714
ORF1ab/nsp4244N244NaaCaaT5252AY.60.002139
ORF1ab/nsp4244N244delAAC---4747All0.000009
ORF1ab/nsp4244N244NaaCaaT4747AY.420.001891
ORF1ab/nsp4244N244NaaCaaT4646B.1.3710.051627
ORF1ab/nsp4244N244KaaCaaA4445AY.40.000068
ORF1ab/nsp4244N244KaaCaaG145AY.40.000002
ORF1ab/nsp4244N244NaaCaaT4444AY.4.20.000954
ORF1ab/nsp4244N244NaaCaaT3838AY.260.001076
ORF1ab/nsp4244N244NaaCaaT3838B.1.2430.002644
ORF1ab/nsp4244N244SaAcaGc3535All0.000007
ORF1ab/nsp4244N244NaaCaaT3434B.1.5960.002963
ORF1ab/nsp4244N244NaaCaaT3434P.1.150.0079
ORF1ab/nsp4244N244NaaCaaT3232AY.330.002137
ORF1ab/nsp4244N244NaaCaaT3030AY.1020.000795
ORF1ab/nsp4244N244NaaCaaT3030AY.1210.00406
ORF1ab/nsp4244N244NaaCaaT3030B.1.1.1600.714286
ORF1ab/nsp4244N244NaaCaaT3030B.1.1.700.010232
ORF1ab/nsp4244N244NaaCaaT2929B.1.5250.003282
ORF1ab/nsp4244N244NaaCaaT2828B.1.1.5190.001112
ORF1ab/nsp4244N244NaaCaaT2727AY.370.008534
ORF1ab/nsp4244N244NaaCaaT2626B.1.360.003793
ORF1ab/nsp4244N244NaaCaaT2525Q.10.003158
ORF1ab/nsp4244N244NaaCaaT2424AY.1180.001504
ORF1ab/nsp4244N244NaaCaaT2222AY.1060.007368
ORF1ab/nsp4244N244NaaCaaT1919AY.1190.000671
ORF1ab/nsp4244N244NaaCaaT1919B.1.6210.001682
ORF1ab/nsp4244N244DAacGac1818All0.000003
ORF1ab/nsp4244N244NaaCaaT1818AY.39.10.000713
ORF1ab/nsp4244N244NaaCaaT1717AY.1130.002421
ORF1ab/nsp4244N244NaaCaaT1717AY.390.00042
ORF1ab/nsp4244N244NaaCaaT1717B.1.2210.001208
ORF1ab/nsp4244N244SaAcaGc1717B.1.258.170.001768
ORF1ab/nsp4244N244NaaCaaT1616AY.290.000252
ORF1ab/nsp4244N244NaaCaaT1616AZ.10.013877
ORF1ab/nsp4244N244NaaCaaT1616B.1.258.170.001664
ORF1ab/nsp4244N244NaaCaaT1515AY.1160.004302
ORF1ab/nsp4244N244NaaCaaT1515AY.950.011416
ORF1ab/nsp4244N244delAAC---1515B.1.1.70.000013
ORF1ab/nsp4244N244NaaCaaT1414B.1.177.770.010167
ORF1ab/nsp4244N244NaaCaaT1313B.1.1.1130.090909
ORF1ab/nsp4244N244NaaCaaT1313B.1.1.2160.011576
ORF1ab/nsp4244N244NaaCaaT1313B.1.1.250.007391
ORF1ab/nsp4244N244NaaCaaT1313B.1.3510.000386
ORF1ab/nsp4244N244NaaCaaT1212B.1.1.3480.009554
ORF1ab/nsp4244N244NaaCaaT1212B.1.5820.005888
ORF1ab/nsp4244N244NaaCaaT1212C.370.001393
ORF1ab/nsp4244N244NaaCaaT1111B.1.2130.164179
ORF1ab/nsp4244N244NaaCaaT1111B.1.2580.000732
ORF1ab/nsp4244N244NaaCaaT1111B.1.617.10.001419
ORF1ab/nsp4244N244NaaCaaT1010A.290.053191
ORF1ab/nsp4244N244NaaCaaT1010AY.470.000311
ORF1ab/nsp4244N244NaaCaaT1010AY.610.001048
ORF1ab/nsp4244N244NaaCaaT1010B.1.1.3170.004117
ORF1ab/nsp4244N244NaaCaaT1010B.1.177.810.001893
ORF1ab/nsp4244N244NaaCaaT1010B.1.351.20.003026
ORF1ab/nsp4244N244NaaCaaT99AM.21
ORF1ab/nsp4244N244NaaCaaT99AY.1000.000414
ORF1ab/nsp4244N244NaaCaaT99B.1.1.1760.003954
ORF1ab/nsp4244N244NaaCaaT99B.1.1.330.003788
ORF1ab/nsp4244N244NaaCaaT99B.1.160.150.044554
ORF1ab/nsp4244N244NaaCaaT88AY.1170.000676
ORF1ab/nsp4244N244NaaCaaT88AY.1200.000297
ORF1ab/nsp4244N244NaaCaaT88AY.50.000165
ORF1ab/nsp4244N244NaaCaaT88AY.5.30.002699
ORF1ab/nsp4244N244NaaCaaT88B.1.1.3180.002414
ORF1ab/nsp4244N244NaaCaaT88B.1.6370.000585
ORF1ab/nsp4244N244NaaCaaT77AY.230.000488
ORF1ab/nsp4244N244NaaCaaT77AY.34.10.00357
ORF1ab/nsp4244N244NaaCaaT77AY.350.001631
ORF1ab/nsp4244N244NaaCaaT77AY.46.40.001152
ORF1ab/nsp4244N244NaaCaaT77AY.98.10.000339
ORF1ab/nsp4244N244NaaCaaT77B.1.1.2220.001428
ORF1ab/nsp4244N244DAacGac77B.1.1.70.000006
ORF1ab/nsp4244N244NaaCaaT77B.1.3110.001922
ORF1ab/nsp4244N244NaaCaaT77P.1.140.000335
ORF1ab/nsp4244N244NaaCaaT66AY.280.011342
ORF1ab/nsp4244N244NaaCaaT66AY.300.002374
ORF1ab/nsp4244N244NaaCaaT66AY.9.20.00022
ORF1ab/nsp4244N244DAacGac66AY.920.001724
ORF1ab/nsp4244N244SaAcaGc66B.1.1.70.000005
ORF1ab/nsp4244N244NaaCaaT66P.1.170.000971
ORF1ab/nsp4244N244NaaCaaT55A.2.50.002495
ORF1ab/nsp4244N244NaaCaaT55AE.80.002445
ORF1ab/nsp4244N244NaaCaaT55AY.4.40.002046
ORF1ab/nsp4244N244NaaCaaT55AY.460.00052
ORF1ab/nsp4244N244NaaCaaT55AY.9.10.000419
ORF1ab/nsp4244N244NaaCaaT55AY.99.20.000461
ORF1ab/nsp4244N244NaaCaaT55B.1.1.390.002548
ORF1ab/nsp4244N244KaaCaaA45B.1.1.70.000004
ORF1ab/nsp4244N244KaaCaaG15B.1.1.70.000001
ORF1ab/nsp4244N244NaaCaaT55B.1.177.570.001405
ORF1ab/nsp4244N244NaaCaaT55C.36.30.002836
ORF1ab/nsp4244N244NaaCaaT55D.20.000375
ORF1ab/nsp4244N244NaaCaaT44AY.1110.000733
ORF1ab/nsp4244N244NaaCaaT44AY.16.10.00188
ORF1ab/nsp4244N244NaaCaaT44AY.380.001997
ORF1ab/nsp4244N244NaaCaaT44AY.730.002661
ORF1ab/nsp4244N244NaaCaaT44AY.750.000224
ORF1ab/nsp4244N244NaaCaaT44AY.90.00027
ORF1ab/nsp4244N244NaaCaaT44B0.000511
ORF1ab/nsp4244N244NaaCaaT44B.1.1.3060.001754
ORF1ab/nsp4244N244NaaCaaT44B.1.1.370.000771
ORF1ab/nsp4244N244NaaCaaT44B.1.1.3970.009009
ORF1ab/nsp4244N244delAAC---44B.1.1770.000053
ORF1ab/nsp4244N244NaaCaaT44B.1.177.120.000607
ORF1ab/nsp4244N244NaaCaaT44B.1.438.10.000429
ORF1ab/nsp4244N244NaaCaaT33A0.001161
ORF1ab/nsp4244N244YAacTac33All0.000001
ORF1ab/nsp4244N244IaAcaTc33All0.000001
ORF1ab/nsp4244N244del1AAc-Gc23All0
ORF1ab/nsp4244N244del1Aac-ac13All0
ORF1ab/nsp4244N244NaaCaaT33AY.1090.002219
ORF1ab/nsp4244N244NaaCaaT33AY.116.10.000934
ORF1ab/nsp4244N244NaaCaaT33AY.3.10.000256
ORF1ab/nsp4244N244NaaCaaT33AY.500.002398
ORF1ab/nsp4244N244NaaCaaT33AY.70.000588
ORF1ab/nsp4244N244NaaCaaT33AY.980.000237
ORF1ab/nsp4244N244NaaCaaT33B.1.1.1700.003741
ORF1ab/nsp4244N244NaaCaaT33B.1.1.2530.007519
ORF1ab/nsp4244N244NaaCaaT33B.1.1.3260.005282
ORF1ab/nsp4244N244NaaCaaT33B.1.160.90.021583
ORF1ab/nsp4244N244NaaCaaT33B.1.177.210.000229
ORF1ab/nsp4244N244NaaCaaT33B.1.214.20.001799
ORF1ab/nsp4244N244NaaCaaT33B.1.243.20.043478
ORF1ab/nsp4244N244NaaCaaT33B.1.3960.002117
ORF1ab/nsp4244N244NaaCaaT33B.1.5990.010949
ORF1ab/nsp4244N244NaaCaaT33B.1.6090.001438
ORF1ab/nsp4244N244delAAC---33B.1.617.20.000011
ORF1ab/nsp4244N244NaaCaaT33B.1.930.002801
ORF1ab/nsp4244N244NaaCaaT33P.1.100.000808
ORF1ab/nsp4244N244NaaCaaT33P.20.00056
ORF1ab/nsp4244N244del2aACa--12All0
ORF1ab/nsp4244N244del2AAc--c12All0
ORF1ab/nsp4244N244NaaCaaT22AY.1040.003968
ORF1ab/nsp4244N244NaaCaaT22AY.1080.002205
ORF1ab/nsp4244N244NaaCaaT22AY.1140.000462
ORF1ab/nsp4244N244NaaCaaT22AY.130.000322
ORF1ab/nsp4244N244NaaCaaT22AY.270.000129
ORF1ab/nsp4244N244NaaCaaT22AY.29.10.000441
ORF1ab/nsp4244N244delAAC---22AY.350.000466
ORF1ab/nsp4244N244NaaCaaT22AY.39.1.10.001449
ORF1ab/nsp4244N244delAAC---22AY.40.000003
ORF1ab/nsp4244N244NaaCaaT22AY.4.50.000215
ORF1ab/nsp4244N244delAAC---22AY.4.50.000215
ORF1ab/nsp4244N244DAacGac22AY.46.60.000144
ORF1ab/nsp4244N244NaaCaaT22AY.540.000191
ORF1ab/nsp4244N244NaaCaaT22AY.590.001059
ORF1ab/nsp4244N244NaaCaaT22AY.720.002721
ORF1ab/nsp4244N244NaaCaaT22AY.740.000231
ORF1ab/nsp4244N244NaaCaaT22AY.75.10.000361
ORF1ab/nsp4244N244NaaCaaT22AY.830.003448
ORF1ab/nsp4244N244NaaCaaT22AY.990.002099
ORF1ab/nsp4244N244delAAC---22B.10.000018
ORF1ab/nsp4244N244NaaCaaT22B.1.1.10.000653
ORF1ab/nsp4244N244NaaCaaT22B.1.1.2610.017241
ORF1ab/nsp4244N244NaaCaaT22B.1.1.2940.002532
ORF1ab/nsp4244N244NaaCaaT22B.1.1.3110.000716
ORF1ab/nsp4244N244NaaCaaT22B.1.1.3120.003824
ORF1ab/nsp4244N244NaaCaaT22B.1.1.3770.002762
ORF1ab/nsp4244N244NaaCaaT22B.1.1.3780.014599
ORF1ab/nsp4244N244NaaCaaT22B.1.1.560.035714
ORF1ab/nsp4244N244NaaCaaT22B.1.1110.00235
ORF1ab/nsp4244N244NaaCaaT22B.1.1280.001271
ORF1ab/nsp4244N244NaaCaaT22B.1.160.280.005848
ORF1ab/nsp4244N244NaaCaaT22B.1.177.40.000422
ORF1ab/nsp4244N244NaaCaaT22B.1.177.50.002484
ORF1ab/nsp4244N244KaaCaaA22B.1.20.000018
ORF1ab/nsp4244N244del1Aac-ac12B.1.20.000009
ORF1ab/nsp4244N244del1AAc-Gc12B.1.20.000009
ORF1ab/nsp4244N244NaaCaaT22B.1.2340.000264
ORF1ab/nsp4244N244NaaCaaT22B.1.2360.004107
ORF1ab/nsp4244N244NaaCaaT22B.1.258.140.001961
ORF1ab/nsp4244N244NaaCaaT22B.1.2910.038462
ORF1ab/nsp4244N244NaaCaaT22B.1.36.10.002281
ORF1ab/nsp4244N244NaaCaaT22B.1.36.100.009569
ORF1ab/nsp4244N244NaaCaaT22B.1.36.290.001035
ORF1ab/nsp4244N244NaaCaaT22B.1.3910.002255
ORF1ab/nsp4244N244NaaCaaT22B.1.4590.008163
ORF1ab/nsp4244N244NaaCaaT22B.1.4990.002101
ORF1ab/nsp4244N244NaaCaaT22B.1.5100.052632
ORF1ab/nsp4244N244NaaCaaT22B.1.5350.057143
ORF1ab/nsp4244N244NaaCaaT22B.1.5650.001621
ORF1ab/nsp4244N244NaaCaaT22B.1.5750.000607
ORF1ab/nsp4244N244SaAcaGc22B.1.5950.000522
ORF1ab/nsp4244N244NaaCaaT22B.1.6270.00404
ORF1ab/nsp4244N244NaaCaaT22B.400.000729
ORF1ab/nsp4244N244NaaCaaT22C.320.046512
ORF1ab/nsp4244N244NaaCaaT22C.36.3.10.005435
ORF1ab/nsp4244N244NaaCaaT22Q.30.00029
ORF1ab/nsp4244N244SaAcaGc11A.20.000662
ORF1ab/nsp4244N244NaaCaaT11A.20.000662
ORF1ab/nsp4244N244NaaCaaT11A.280.002646
ORF1ab/nsp4244N244NaaCaaT11AD.20.000219
ORF1ab/nsp4244N244TaAcaCc11All0
ORF1ab/nsp4244N244NaaCaaT11AU.30.00211
ORF1ab/nsp4244N244NaaCaaT11AY.1050.000643
ORF1ab/nsp4244N244delAAC---11AY.1110.000183
ORF1ab/nsp4244N244NaaCaaT11AY.120.000316
ORF1ab/nsp4244N244delAAC---11AY.1200.000037
ORF1ab/nsp4244N244KaaCaaA11AY.240.000431
ORF1ab/nsp4244N244SaAcaGc11AY.250.000006
ORF1ab/nsp4244N244KaaCaaG11AY.270.000065
ORF1ab/nsp4244N244SaAcaGc11AY.30.00001
ORF1ab/nsp4244N244NaaCaaT11AY.340.000097
ORF1ab/nsp4244N244delAAC---11AY.360.000148
ORF1ab/nsp4244N244KaaCaaA11AY.370.000316
ORF1ab/nsp4244N244delAAC---11AY.390.000025
ORF1ab/nsp4244N244del2aACa--11AY.40.000002
ORF1ab/nsp4244N244NaaCaaT11AY.4.30.000842
ORF1ab/nsp4244N244NaaCaaT11AY.410.000294
ORF1ab/nsp4244N244del1AAc-Gc11AY.440.000006
ORF1ab/nsp4244N244DAacGac11AY.440.000006
ORF1ab/nsp4244N244NaaCaaT11AY.450.000122
ORF1ab/nsp4244N244delAAC---11AY.460.000104
ORF1ab/nsp4244N244NaaCaaT11AY.46.30.000934
ORF1ab/nsp4244N244SaAcaGc11AY.550.000917
ORF1ab/nsp4244N244NaaCaaT11AY.550.000917
ORF1ab/nsp4244N244NaaCaaT11AY.580.000907
ORF1ab/nsp4244N244NaaCaaT11AY.630.000387
ORF1ab/nsp4244N244NaaCaaT11AY.690.000187
ORF1ab/nsp4244N244NaaCaaT11AY.710.000475
ORF1ab/nsp4244N244delAAC---11AY.75.10.00018
ORF1ab/nsp4244N244NaaCaaT11AY.770.001127
ORF1ab/nsp4244N244NaaCaaT11AY.780.001541
ORF1ab/nsp4244N244delAAC---11AY.810.001992
ORF1ab/nsp4244N244NaaCaaT11AY.840.000437
ORF1ab/nsp4244N244SaAcaGc11AY.850.000427
ORF1ab/nsp4244N244NaaCaaT11AY.880.000884
ORF1ab/nsp4244N244delAAC---11AY.90.000068
ORF1ab/nsp4244N244NaaCaaT11AY.9.2.10.001976
ORF1ab/nsp4244N244NaaCaaT11AY.910.00073
ORF1ab/nsp4244N244NaaCaaT11AY.920.000287
ORF1ab/nsp4244N244NaaCaaT11AY.970.001701
ORF1ab/nsp4244N244KaaCaaA11B0.000128
ORF1ab/nsp4244N244IaAcaTc11B.10.000009
ORF1ab/nsp4244N244DAacGac11B.10.000009
ORF1ab/nsp4244N244SaAcaGc11B.10.000009
ORF1ab/nsp4244N244YAacTac11B.1.10.000018
ORF1ab/nsp4244N244delAAC---11B.1.10.000018
ORF1ab/nsp4244N244SaAcaGc11B.1.1.1530.001095
ORF1ab/nsp4244N244NaaCaaT11B.1.1.1610.003534
ORF1ab/nsp4244N244NaaCaaT11B.1.1.1890.001513
ORF1ab/nsp4244N244NaaCaaT11B.1.1.1980.001468
ORF1ab/nsp4244N244NaaCaaT11B.1.1.2250.007194
ORF1ab/nsp4244N244NaaCaaT11B.1.1.2360.006897
ORF1ab/nsp4244N244NaaCaaT11B.1.1.2580.003257
ORF1ab/nsp4244N244NaaCaaT11B.1.1.2690.001353
ORF1ab/nsp4244N244NaaCaaT11B.1.1.2910.000742
ORF1ab/nsp4244N244NaaCaaT11B.1.1.3010.001179
ORF1ab/nsp4244N244NaaCaaT11B.1.1.3220.008772
ORF1ab/nsp4244N244TaAcaCc11B.1.1.330.000421
ORF1ab/nsp4244N244NaaCaaT11B.1.1.3690.000446
ORF1ab/nsp4244N244NaaCaaT11B.1.1.4870.005587
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