CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 222

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4222R222RR2985RsynagGagA788277930.9887089218-9220
ORF1ab/nsp4222R222RR2985RsynAggCgg7882890.01129169218-9220
ORF1ab/nsp4222R222KR2985KnonsynaGgaAg1491470.9865779218-9220
ORF1ab/nsp4222R222KR2985KnonsynaGGaAA14920.01342289218-9220
ORF1ab/nsp4222R222delR2985deldelAGG---454519218-9220
ORF1ab/nsp4222R222SR2985SnonsynagGagT29220.7586219218-9220
ORF1ab/nsp4222R222SR2985SnonsynagGagC2970.2413799218-9220
ORF1ab/nsp4222R222WR2985WnonsynAggTgg131319218-9220
ORF1ab/nsp4222R222MR2985MnonsynaGgaTg8819218-9220
ORF1ab/nsp4222R222del1R2985del1delaGga-g840.59218-9220
ORF1ab/nsp4222R222del1R2985del1delAgg-gg830.3759218-9220
ORF1ab/nsp4222R222del1R2985del1delagGag-810.1259218-9220
ORF1ab/nsp4222R222TR2985TnonsynaGgaCg760.8571439218-9220
ORF1ab/nsp4222R222XR2985XnonsynAGgTAg750.7142869218-9220
ORF1ab/nsp4222R222TR2985TnonsynaGGaCA710.1428579218-9220
ORF1ab/nsp4222R222XR2985XnonsynAGGTAA710.1428579218-9220
ORF1ab/nsp4222R222XR2985XnonsynAgGTgA710.1428579218-9220
ORF1ab/nsp4222R222GR2985GnonsynAggGgg4419218-9220
ORF1ab/nsp4222R222VR2985VnonsynAGgGTg1119218-9220

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4222R222RagGagA77937882All0.001491
ORF1ab/nsp4222R222RAggCgg897882All0.000017
ORF1ab/nsp4222R222RagGagA25152515AY.410.739271
ORF1ab/nsp4222R222RagGagA24282429B.1.617.20.009142
ORF1ab/nsp4222R222RAggCgg12429B.1.617.20.000004
ORF1ab/nsp4222R222RagGagA12391239AY.1030.007693
ORF1ab/nsp4222R222RagGagA209297B.1.1.70.000187
ORF1ab/nsp4222R222RAggCgg88297B.1.1.70.000079
ORF1ab/nsp4222R222RagGagA281281AY.40.000437
ORF1ab/nsp4222R222RagGagA247247AY.420.009937
ORF1ab/nsp4222R222KaGgaAg147149All0.000028
ORF1ab/nsp4222R222KaGGaAA2149All0
ORF1ab/nsp4222R222RagGagA102102B.1.438.10.010941
ORF1ab/nsp4222R222RagGagA9191AY.250.000547
ORF1ab/nsp4222R222RagGagA9191B.1.20.000801
ORF1ab/nsp4222R222RagGagA8080AY.430.000354
ORF1ab/nsp4222R222RagGagA5050AY.1020.001326
ORF1ab/nsp4222R222delAGG---4545All0.000009
ORF1ab/nsp4222R222RagGagA3636B.1.5260.000846
ORF1ab/nsp4222R222SagGagT2229All0.000004
ORF1ab/nsp4222R222SagGagC729All0.000001
ORF1ab/nsp4222R222RagGagA2626AY.46.60.001877
ORF1ab/nsp4222R222KaGgaAg2424AY.250.000144
ORF1ab/nsp4222R222RagGagA2323AY.440.00014
ORF1ab/nsp4222R222RagGagA2222AY.1070.010252
ORF1ab/nsp4222R222KaGgaAg2021AY.40.000031
ORF1ab/nsp4222R222KaGGaAA121AY.40.000002
ORF1ab/nsp4222R222RagGagA2121AY.470.000653
ORF1ab/nsp4222R222KaGgaAg1919B.1.617.20.000072
ORF1ab/nsp4222R222KaGgaAg1616B.1.1.70.000014
ORF1ab/nsp4222R222delAGG---1414B.1.1.70.000013
ORF1ab/nsp4222R222RagGagA1414B.1.3510.000416
ORF1ab/nsp4222R222WAggTgg1313All0.000002
ORF1ab/nsp4222R222RagGagA1313B.1.4270.000656
ORF1ab/nsp4222R222KaGgaAg1212B.10.00011
ORF1ab/nsp4222R222RagGagA1212B.1.10.000218
ORF1ab/nsp4222R222RagGagA1111AY.30.000109
ORF1ab/nsp4222R222RagGagA1111B.1.1390.008065
ORF1ab/nsp4222R222RagGagA99AY.1190.000318
ORF1ab/nsp4222R222KaGgaAg99AY.30.00009
ORF1ab/nsp4222R222RagGagA99B.1.4290.000212
ORF1ab/nsp4222R222MaGgaTg88All0.000002
ORF1ab/nsp4222R222del1aGga-g48All0.000001
ORF1ab/nsp4222R222del1Agg-gg38All0.000001
ORF1ab/nsp4222R222del1agGag-18All0
ORF1ab/nsp4222R222RagGagA88AY.1110.001465
ORF1ab/nsp4222R222RagGagA88AY.450.000973
ORF1ab/nsp4222R222RagGagA88AY.750.000448
ORF1ab/nsp4222R222RagGagA88B.1.2580.000532
ORF1ab/nsp4222R222RagGagA88B.1.258.170.000832
ORF1ab/nsp4222R222RagGagA88B.1.4040.010417
ORF1ab/nsp4222R222RagGagA88P.10.000126
ORF1ab/nsp4222R222TaGgaCg67All0.000001
ORF1ab/nsp4222R222XAGgTAg57All0.000001
ORF1ab/nsp4222R222TaGGaCA17All0
ORF1ab/nsp4222R222XAGGTAA17All0
ORF1ab/nsp4222R222XAgGTgA17All0
ORF1ab/nsp4222R222KaGgaAg77AY.440.000043
ORF1ab/nsp4222R222RagGagA77AY.50.000145
ORF1ab/nsp4222R222RagGagA77AY.740.00081
ORF1ab/nsp4222R222RagGagA77AY.980.000553
ORF1ab/nsp4222R222SagGagT57B.1.1.70.000004
ORF1ab/nsp4222R222SagGagC27B.1.1.70.000002
ORF1ab/nsp4222R222RagGagA77B.1.5510.009032
ORF1ab/nsp4222R222RagGagA66P.1.150.001394
ORF1ab/nsp4222R222XAGgTAg350.166667
ORF1ab/nsp4222R222XAgGTgA150.055556
ORF1ab/nsp4222R222XAGGTAA150.055556
ORF1ab/nsp4222R222delAGG---55AY.250.00003
ORF1ab/nsp4222R222RagGagA55AY.390.000124
ORF1ab/nsp4222R222RagGagA55AY.460.00052
ORF1ab/nsp4222R222RagGagA55AY.770.005637
ORF1ab/nsp4222R222RagGagA55AY.920.001436
ORF1ab/nsp4222R222RagGagA55B.10.000046
ORF1ab/nsp4222R222RagGagA55B.1.1770.000066
ORF1ab/nsp4222R222KaGgaAg340.166667
ORF1ab/nsp4222R222KaGGaAA140.055556
ORF1ab/nsp4222R222GAggGgg44All0.000001
ORF1ab/nsp4222R222KaGgaAg44AY.330.000267
ORF1ab/nsp4222R222RagGagA44AY.330.000267
ORF1ab/nsp4222R222delAGG---44AY.430.000018
ORF1ab/nsp4222R222RagGagA44AY.5.30.00135
ORF1ab/nsp4222R222MaGgaTg44B.10.000037
ORF1ab/nsp4222R222SagGagT34B.10.000027
ORF1ab/nsp4222R222SagGagC14B.10.000009
ORF1ab/nsp4222R222RagGagA44B.1.36.170.001976
ORF1ab/nsp4222R222WAggTgg330.166667
ORF1ab/nsp4222R222KaGgaAg33AY.1030.000019
ORF1ab/nsp4222R222RagGagA33AY.220.006276
ORF1ab/nsp4222R222RagGagA33AY.610.000314
ORF1ab/nsp4222R222RagGagA33AY.640.001786
ORF1ab/nsp4222R222RagGagA33AY.840.001312
ORF1ab/nsp4222R222RagGagA33B.1.1.2410.006211
ORF1ab/nsp4222R222RagGagA33B.1.1.2840.000322
ORF1ab/nsp4222R222RagGagA33B.1.1.4340.001046
ORF1ab/nsp4222R222TaGgaCg33B.1.1.70.000003
ORF1ab/nsp4222R222KaGgaAg33B.1.2430.000209
ORF1ab/nsp4222R222RagGagA33B.1.5950.000783
ORF1ab/nsp4222R222delAGG---33B.1.617.20.000011
ORF1ab/nsp4222R222RagGagA33C.20.048387
ORF1ab/nsp4222R222RagGagA220.111111
ORF1ab/nsp4222R222RagGagA22AY.1000.000092
ORF1ab/nsp4222R222RagGagA22AY.1170.000169
ORF1ab/nsp4222R222RagGagA22AY.260.000057
ORF1ab/nsp4222R222SagGagC22AY.260.000057
ORF1ab/nsp4222R222KaGgaAg22AY.290.000032
ORF1ab/nsp4222R222RagGagA22AY.320.001065
ORF1ab/nsp4222R222delAGG---22AY.4.50.000215
ORF1ab/nsp4222R222SagGagT22AY.430.000009
ORF1ab/nsp4222R222RagGagA22AY.46.40.000329
ORF1ab/nsp4222R222KaGgaAg22AY.50.000041
ORF1ab/nsp4222R222RagGagA22AY.550.001835
ORF1ab/nsp4222R222RagGagA22AY.580.001815
ORF1ab/nsp4222R222RagGagA22AY.90.000135
ORF1ab/nsp4222R222RagGagA22AY.98.10.000097
ORF1ab/nsp4222R222WAggTgg22B.10.000018
ORF1ab/nsp4222R222KaGgaAg22B.1.10.000036
ORF1ab/nsp4222R222MaGgaTg22B.1.10.000036
ORF1ab/nsp4222R222RagGagA22B.1.1.1530.002191
ORF1ab/nsp4222R222RagGagA22B.1.1.280.000622
ORF1ab/nsp4222R222RagGagA22B.1.1.2980.001724
ORF1ab/nsp4222R222WAggTgg22B.1.1.70.000002
ORF1ab/nsp4222R222del1aGga-g22B.1.177.210.000153
ORF1ab/nsp4222R222SagGagT22B.1.20.000018
ORF1ab/nsp4222R222KaGgaAg22B.1.2210.000142
ORF1ab/nsp4222R222WAggTgg22B.1.2210.000142
ORF1ab/nsp4222R222RagGagA22B.1.36.10.002281
ORF1ab/nsp4222R222RagGagA22B.1.4160.002538
ORF1ab/nsp4222R222RagGagA22B.1.5090.001732
ORF1ab/nsp4222R222del1Agg-gg22B.1.6270.00404
ORF1ab/nsp4222R222RagGagA22C.370.000232
ORF1ab/nsp4222R222SagGagT12D.20.000075
ORF1ab/nsp4222R222SagGagC12D.20.000075
ORF1ab/nsp4222R222SagGagT22P.1.140.000096
ORF1ab/nsp4222R222RagGagA22Q.10.000253
ORF1ab/nsp4222R222RagGagA22R.10.00018
ORF1ab/nsp4222R222SagGagT110.055556
ORF1ab/nsp4222R222GAggGgg11A0.000387
ORF1ab/nsp4222R222RagGagA11A.10.000282
ORF1ab/nsp4222R222VAGgGTg11All0
ORF1ab/nsp4222R222RagGagA11AP.10.001502
ORF1ab/nsp4222R222KaGgaAg11AY.1010.00049
ORF1ab/nsp4222R222KaGgaAg11AY.1020.000027
ORF1ab/nsp4222R222RagGagA11AY.1050.000643
ORF1ab/nsp4222R222RagGagA11AY.1060.000335
ORF1ab/nsp4222R222RagGagA11AY.1080.001103
ORF1ab/nsp4222R222KaGgaAg11AY.1100.000113
ORF1ab/nsp4222R222RagGagA11AY.1130.000142
ORF1ab/nsp4222R222RagGagA11AY.1160.000287
ORF1ab/nsp4222R222KaGgaAg11AY.1180.000063
ORF1ab/nsp4222R222RagGagA11AY.1180.000063
ORF1ab/nsp4222R222RagGagA11AY.1200.000037
ORF1ab/nsp4222R222KaGgaAg11AY.1200.000037
ORF1ab/nsp4222R222delAGG---11AY.1200.000037
ORF1ab/nsp4222R222RagGagA11AY.120.10.000321
ORF1ab/nsp4222R222RagGagA11AY.1210.000135
ORF1ab/nsp4222R222RagGagA11AY.160.00038
ORF1ab/nsp4222R222RagGagA11AY.200.000039
ORF1ab/nsp4222R222KaGgaAg11AY.200.000039
ORF1ab/nsp4222R222RagGagA11AY.230.00007
ORF1ab/nsp4222R222RagGagA11AY.240.000431
ORF1ab/nsp4222R222RagGagA11AY.270.000065
ORF1ab/nsp4222R222RagGagA11AY.290.000016
ORF1ab/nsp4222R222RagGagA11AY.300.000396
ORF1ab/nsp4222R222del1agGag-11AY.360.000148
ORF1ab/nsp4222R222RagGagA11AY.4.20.000022
ORF1ab/nsp4222R222delAGG---11AY.4.20.000022
ORF1ab/nsp4222R222KaGgaAg11AY.430.000004
ORF1ab/nsp4222R222RagGagA11AY.46.20.000635
ORF1ab/nsp4222R222KaGgaAg11AY.470.000031
ORF1ab/nsp4222R222WAggTgg11AY.50.000021
ORF1ab/nsp4222R222del1Agg-gg11AY.50.000021
ORF1ab/nsp4222R222RagGagA11AY.520.000814
ORF1ab/nsp4222R222RagGagA11AY.540.000095
ORF1ab/nsp4222R222RagGagA11AY.570.000656
ORF1ab/nsp4222R222KaGgaAg11AY.610.000105
ORF1ab/nsp4222R222delAGG---11AY.740.000116
ORF1ab/nsp4222R222delAGG---11AY.780.001541
ORF1ab/nsp4222R222RagGagA11AY.820.001357
ORF1ab/nsp4222R222RagGagA11AY.870.000833
ORF1ab/nsp4222R222KaGgaAg11AY.880.000884
ORF1ab/nsp4222R222RagGagA11AY.910.00073
ORF1ab/nsp4222R222SagGagT11AY.930.000273
ORF1ab/nsp4222R222RagGagA11AY.930.000273
ORF1ab/nsp4222R222delAGG---11AY.990.001049
ORF1ab/nsp4222R222RagGagA11B0.000128
ORF1ab/nsp4222R222KaGgaAg11B0.000128
ORF1ab/nsp4222R222XAGgTAg11B.10.000009
ORF1ab/nsp4222R222del1aGga-g11B.10.000009
ORF1ab/nsp4222R222delAGG---11B.10.000009
ORF1ab/nsp4222R222GAggGgg11B.10.000009
ORF1ab/nsp4222R222SagGagT11B.1.10.000018
ORF1ab/nsp4222R222delAGG---11B.1.10.000018
ORF1ab/nsp4222R222RagGagA11B.1.1.100.001115
ORF1ab/nsp4222R222RagGagA11B.1.1.1350.004695
ORF1ab/nsp4222R222delAGG---11B.1.1.1370.0125
ORF1ab/nsp4222R222RagGagA11B.1.1.1800.010753
ORF1ab/nsp4222R222TaGgaCg11B.1.1.250.000569
ORF1ab/nsp4222R222KaGgaAg11B.1.1.3170.000412
ORF1ab/nsp4222R222RagGagA11B.1.1.3180.000302
ORF1ab/nsp4222R222RagGagA11B.1.1.330.000421
ORF1ab/nsp4222R222RagGagA11B.1.1.3540.004386
ORF1ab/nsp4222R222RagGagA11B.1.1.3690.000446
ORF1ab/nsp4222R222RagGagA11B.1.1.4400.011765
ORF1ab/nsp4222R222delAGG---11B.1.1.4480.002033
ORF1ab/nsp4222R222RagGagA11B.1.1260.001276
ORF1ab/nsp4222R222WAggTgg11B.1.1600.000031
ORF1ab/nsp4222R222delAGG---11B.1.1770.000013
ORF1ab/nsp4222R222GAggGgg11B.1.1770.000013
ORF1ab/nsp4222R222RagGagA11B.1.177.320.00135
ORF1ab/nsp4222R222SagGagC11B.1.177.60.000977
ORF1ab/nsp4222R222RagGagA11B.1.177.70.000165
ORF1ab/nsp4222R222GAggGgg11B.1.20.000009
ORF1ab/nsp4222R222KaGgaAg11B.1.20.000009
ORF1ab/nsp4222R222RagGagA11B.1.2210.000071
ORF1ab/nsp4222R222XAGgTAg11B.1.2210.000071
ORF1ab/nsp4222R222RagGagA11B.1.2410.000812
ORF1ab/nsp4222R222KaGgaAg11B.1.2580.000067
ORF1ab/nsp4222R222KaGgaAg11B.1.258.170.000104
ORF1ab/nsp4222R222WAggTgg11B.1.3060.005714
ORF1ab/nsp4222R222RagGagA11B.1.3500.002933
ORF1ab/nsp4222R222RagGagA11B.1.351.20.000303
ORF1ab/nsp4222R222RagGagA11B.1.36.100.004785
ORF1ab/nsp4222R222delAGG---11B.1.36.290.000517
ORF1ab/nsp4222R222RagGagA11B.1.3610.001289
ORF1ab/nsp4222R222TaGgaCg11B.1.3960.000706
ORF1ab/nsp4222R222TaGGaCA11B.1.4150.014286
ORF1ab/nsp4222R222MaGgaTg11B.1.4270.00005
ORF1ab/nsp4222R222SagGagT11B.1.4290.000024
ORF1ab/nsp4222R222KaGgaAg11B.1.4290.000024
ORF1ab/nsp4222R222SagGagT11B.1.4520.013699
ORF1ab/nsp4222R222RagGagA11B.1.5610.000397
ORF1ab/nsp4222R222RagGagA11B.1.5630.016949
ORF1ab/nsp4222R222SagGagT11B.1.5820.000491
ORF1ab/nsp4222R222KaGgaAg11B.1.5960.000087
ORF1ab/nsp4222R222RagGagA11B.1.6090.000479
ORF1ab/nsp4222R222SagGagT11B.1.617.20.000004
ORF1ab/nsp4222R222TaGgaCg11B.1.617.20.000004
ORF1ab/nsp4222R222del1aGga-g11B.1.617.30.002985
ORF1ab/nsp4222R222delAGG---11B.1.6210.000089
ORF1ab/nsp4222R222KaGgaAg11B.1.6210.000089
ORF1ab/nsp4222R222RagGagA11B.1.670.043478
ORF1ab/nsp4222R222delAGG---11B.150.017544
ORF1ab/nsp4222R222delAGG---11B.4.40.018868
ORF1ab/nsp4222R222RagGagA11C.10.002392
ORF1ab/nsp4222R222VAGgGTg11C.350.000774
ORF1ab/nsp4222R222WAggTgg11D.20.000075
ORF1ab/nsp4222R222MaGgaTg11D.20.000075
ORF1ab/nsp4222R222delAGG---11P.10.000016
ORF1ab/nsp4222R222RagGagA11P.1.10.000318
ORF1ab/nsp4222R222delAGG---11P.1.10.000318
ORF1ab/nsp4222R222RagGagA11P.1.100.000269
ORF1ab/nsp4222R222RagGagA11P.1.120.000484
ORF1ab/nsp4222R222RagGagA11P.1.140.000048
ORF1ab/nsp4222R222RagGagA11P.30.001595
ORF1ab/nsp4222R222delAGG---11Q.20.000613
ORF1ab/nsp4222R222KaGgaAg11Q.80.000165
ORF1ab/nsp4222R222RagGagA11Y.10.012821