CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 217 & Codon = Aat

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4217D217ND2980NnonsynGatAat19905199030.99999203-9205

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4217D217NGatAat1990319905All0.003807
ORF1ab/nsp4217D217NGatAat89278927B.1.617.20.033614
ORF1ab/nsp4217D217NGatAat41714171AY.350.972034
ORF1ab/nsp4217D217NGatAat17601760AY.480.818605
ORF1ab/nsp4217D217NGatAat17451745C.36.30.98979
ORF1ab/nsp4217D217NGatAat604605P.30.963317
ORF1ab/nsp4217D217NGatAat587587AY.16.10.275846
ORF1ab/nsp4217D217NGatAat327327C.36.3.10.888587
ORF1ab/nsp4217D217NGatAat204204AY.440.001242
ORF1ab/nsp4217D217NGatAat174174AY.130.02801
ORF1ab/nsp4217D217NGatAat127127AY.1080.140022
ORF1ab/nsp4217D217NGatAat112112AY.230.007812
ORF1ab/nsp4217D217NGatAat104104B.1.1.70.000093
ORF1ab/nsp4217D217NGatAat6060AY.590.03178
ORF1ab/nsp4217D217NGatAat5959B.10.00054
ORF1ab/nsp4217D217NGatAat5858AY.920.016662
ORF1ab/nsp4217D217NGatAat5050AY.680.013687
ORF1ab/nsp4217D217NGatAat5050AY.980.00395
ORF1ab/nsp4217D217NGatAat4646B.1.20.000405
ORF1ab/nsp4217D217NGatAat4545B.1.4290.001059
ORF1ab/nsp4217D217NGatAat4040AY.660.042781
ORF1ab/nsp4217D217NGatAat3939AY.540.003719
ORF1ab/nsp4217D217NGatAat3535AY.190.039909
ORF1ab/nsp4217D217NGatAat3030B.1.4270.001515
ORF1ab/nsp4217D217NGatAat2929C.360.026412
ORF1ab/nsp4217D217NGatAat2828AY.370.00885
ORF1ab/nsp4217D217NGatAat2626AY.520.021173
ORF1ab/nsp4217D217NGatAat2323AY.1030.000143
ORF1ab/nsp4217D217NGatAat2020AY.5.40.005534
ORF1ab/nsp4217D217NGatAat1919AY.430.000084
ORF1ab/nsp4217D217NGatAat1818AY.1160.005162
ORF1ab/nsp4217D217NGatAat1515AY.40.000023
ORF1ab/nsp4217D217NGatAat1414AY.150.031111
ORF1ab/nsp4217D217NGatAat1212AY.470.000373
ORF1ab/nsp4217D217NGatAat1111P.10.000173
ORF1ab/nsp4217D217NGatAat1010B.1.10.000181
ORF1ab/nsp4217D217NGatAat1010B.1.1.2220.00204
ORF1ab/nsp4217D217NGatAat99AY.1210.001218
ORF1ab/nsp4217D217NGatAat99AY.550.008257
ORF1ab/nsp4217D217NGatAat99AY.900.00616
ORF1ab/nsp4217D217NGatAat99B.1.5640.003833
ORF1ab/nsp4217D217NGatAat88AY.240.003448
ORF1ab/nsp4217D217NGatAat88AY.250.000048
ORF1ab/nsp4217D217NGatAat88AY.770.009019
ORF1ab/nsp4217D217NGatAat88B.1.1.630.003086
ORF1ab/nsp4217D217NGatAat77AY.620.00305
ORF1ab/nsp4217D217NGatAat77AY.750.000392
ORF1ab/nsp4217D217NGatAat77AY.870.005828
ORF1ab/nsp4217D217NGatAat77AY.98.10.000339
ORF1ab/nsp4217D217NGatAat77B.1.1.2940.008861
ORF1ab/nsp4217D217NGatAat77B.1.3510.000208
ORF1ab/nsp4217D217NGatAat77B.1.617.10.000903
ORF1ab/nsp4217D217NGatAat66AY.640.003571
ORF1ab/nsp4217D217NGatAat55AY.1180.000313
ORF1ab/nsp4217D217NGatAat55AY.200.000194
ORF1ab/nsp4217D217NGatAat55AY.560.008026
ORF1ab/nsp4217D217NGatAat55AY.610.000524
ORF1ab/nsp4217D217NGatAat55B.1.6370.000365
ORF1ab/nsp4217D217NGatAat55C.350.00387
ORF1ab/nsp4217D217NGatAat44AY.1000.000184
ORF1ab/nsp4217D217NGatAat44AY.1200.000149
ORF1ab/nsp4217D217NGatAat44AY.30.00004
ORF1ab/nsp4217D217NGatAat44AY.450.000487
ORF1ab/nsp4217D217NGatAat44AY.780.006163
ORF1ab/nsp4217D217NGatAat44AY.880.003537
ORF1ab/nsp4217D217NGatAat44AY.9.20.000147
ORF1ab/nsp4217D217NGatAat44B.1.1.390.002039
ORF1ab/nsp4217D217NGatAat44B.1.2580.000266
ORF1ab/nsp4217D217NGatAat33AY.1170.000254
ORF1ab/nsp4217D217NGatAat33AY.220.006276
ORF1ab/nsp4217D217NGatAat33AY.390.000074
ORF1ab/nsp4217D217NGatAat33AY.530.000863
ORF1ab/nsp4217D217NGatAat33AY.710.001425
ORF1ab/nsp4217D217NGatAat33AY.930.000819
ORF1ab/nsp4217D217NGatAat33AY.950.002283
ORF1ab/nsp4217D217NGatAat33B.1.2430.000209
ORF1ab/nsp4217D217NGatAat33B.1.6210.000266
ORF1ab/nsp4217D217NGatAat33P.50.041096
ORF1ab/nsp4217D217NGatAat22A0.000774
ORF1ab/nsp4217D217NGatAat22AY.100.00106
ORF1ab/nsp4217D217NGatAat22AY.1010.000981
ORF1ab/nsp4217D217NGatAat22AY.110.002677
ORF1ab/nsp4217D217NGatAat22AY.120.000632
ORF1ab/nsp4217D217NGatAat22AY.260.000057
ORF1ab/nsp4217D217NGatAat22AY.290.000032
ORF1ab/nsp4217D217NGatAat22AY.330.000134
ORF1ab/nsp4217D217NGatAat22AY.400.001929
ORF1ab/nsp4217D217NGatAat22AY.670.000929
ORF1ab/nsp4217D217NGatAat22AY.700.000417
ORF1ab/nsp4217D217NGatAat22AY.75.10.000361
ORF1ab/nsp4217D217NGatAat12AY.990.001049
ORF1ab/nsp4217D217NGatAat22AY.99.20.000184
ORF1ab/nsp4217D217NGatAat22B0.000256
ORF1ab/nsp4217D217NGatAat22B.1.1.10.000653
ORF1ab/nsp4217D217NGatAat22B.1.1.3720.001377
ORF1ab/nsp4217D217NGatAat22B.1.1.5240.041667
ORF1ab/nsp4217D217NGatAat22B.1.1770.000026
ORF1ab/nsp4217D217NGatAat22B.1.5950.000522
ORF1ab/nsp4217D217NGatAat22B.1.5960.000174
ORF1ab/nsp4217D217NGatAat22B.1.810.042553
ORF1ab/nsp4217D217NGatAat22B.30.001661
ORF1ab/nsp4217D217NGatAat22D.20.00015
ORF1ab/nsp4217D217NGatAat22P.1.140.000096
ORF1ab/nsp4217D217NGatAat22P.20.000373
ORF1ab/nsp4217D217NGatAat11A.50.001923
ORF1ab/nsp4217D217NGatAat11AY.1060.000335
ORF1ab/nsp4217D217NGatAat11AY.1100.000113
ORF1ab/nsp4217D217NGatAat11AY.1140.000231
ORF1ab/nsp4217D217NGatAat11AY.160.00038
ORF1ab/nsp4217D217NGatAat11AY.270.000065
ORF1ab/nsp4217D217NGatAat11AY.280.00189
ORF1ab/nsp4217D217NGatAat11AY.300.000396
ORF1ab/nsp4217D217NGatAat11AY.320.000532
ORF1ab/nsp4217D217NGatAat11AY.360.000148
ORF1ab/nsp4217D217NGatAat11AY.380.000499
ORF1ab/nsp4217D217NGatAat11AY.39.1.10.000725
ORF1ab/nsp4217D217NGatAat11AY.4.40.000409
ORF1ab/nsp4217D217NGatAat11AY.410.000294
ORF1ab/nsp4217D217NGatAat11AY.420.00004
ORF1ab/nsp4217D217NGatAat11AY.460.000104
ORF1ab/nsp4217D217NGatAat11AY.50.000021
ORF1ab/nsp4217D217NGatAat11AY.5.30.000337
ORF1ab/nsp4217D217NGatAat11AY.510.000909
ORF1ab/nsp4217D217NGatAat11AY.580.000907
ORF1ab/nsp4217D217NGatAat11AY.820.001357
ORF1ab/nsp4217D217NGatAat11AY.910.00073
ORF1ab/nsp4217D217NGatAat11AY.960.002075
ORF1ab/nsp4217D217NGatAat11B.1.1.2100.005714
ORF1ab/nsp4217D217NGatAat11B.1.1.2140.000055
ORF1ab/nsp4217D217NGatAat11B.1.1.330.000421
ORF1ab/nsp4217D217NGatAat11B.1.1.3540.004386
ORF1ab/nsp4217D217NGatAat11B.1.1.3690.000446
ORF1ab/nsp4217D217NGatAat11B.1.1.4320.001266
ORF1ab/nsp4217D217NGatAat11B.1.160.290.004219
ORF1ab/nsp4217D217NGatAat11B.1.160.310.008065
ORF1ab/nsp4217D217NGatAat11B.1.2140.003663
ORF1ab/nsp4217D217NGatAat11B.1.258.170.000104
ORF1ab/nsp4217D217NGatAat11B.1.360.000146
ORF1ab/nsp4217D217NGatAat11B.1.3750.00082
ORF1ab/nsp4217D217NGatAat11B.1.466.20.000391
ORF1ab/nsp4217D217NGatAat11B.1.4990.00105
ORF1ab/nsp4217D217NGatAat11B.1.5010.007353
ORF1ab/nsp4217D217NGatAat11B.1.5260.000024
ORF1ab/nsp4217D217NGatAat11B.1.5440.006024
ORF1ab/nsp4217D217NGatAat11C.160.00106
ORF1ab/nsp4217D217NGatAat11C.370.000116
ORF1ab/nsp4217D217NGatAat11C.390.018868
ORF1ab/nsp4217D217NGatAat11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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