CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 204 | T204I | T2967I | nonsyn | aCc | aTc | 15310 | 15304 | 0.999608 | 9164-9166 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 15304 | 15310 | All | 0.002927 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 6101 | 6102 | AY.113 | 0.868717 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1329 | 1329 | AY.4 | 0.002068 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1117 | 1117 | AY.39.1.1 | 0.80942 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 586 | 586 | B.1.1.7 | 0.000525 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 570 | 570 | AY.103 | 0.003539 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 466 | 468 | B.1.2 | 0.004103 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 380 | 380 | AY.44 | 0.002313 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 376 | 377 | B.1.617.2 | 0.001416 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 339 | 339 | AY.3.1 | 0.028903 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 306 | 306 | AY.25 | 0.001841 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 250 | 250 | AY.39 | 0.006178 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 244 | 244 | AY.43 | 0.001081 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 202 | 202 | AY.3 | 0.002009 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 144 | 144 | B.1.160 | 0.004491 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 144 | 144 | P.2 | 0.026876 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 131 | 131 | P.1 | 0.002064 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 118 | 118 | B.1 | 0.001081 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 114 | 114 | B.1.177 | 0.001501 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 76 | 76 | AY.4.2 | 0.001648 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 75 | 75 | AY.20 | 0.002915 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 73 | 73 | AY.26 | 0.002067 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 67 | 67 | R.1 | 0.006031 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 64 | 64 | B.1.351 | 0.001902 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 61 | 61 | AY.75 | 0.003417 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 60 | 60 | AY.5 | 0.001239 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 58 | 58 | B.1.429 | 0.001365 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 58 | 58 | B.1.526 | 0.001363 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 57 | 57 | AY.102 | 0.001511 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 57 | 57 | AY.29 | 0.000899 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 54 | 54 | AY.119 | 0.001907 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 52 | 53 | AY.47 | 0.001617 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 51 | 51 | B.1.637 | 0.003727 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 50 | 50 | AY.14 | 0.004401 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 49 | 49 | B.1.177.60 | 0.010703 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 43 | 43 | AY.23 | 0.002999 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 39 | 40 | AY.54 | 0.003719 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 40 | 40 | B.1.1 | 0.000726 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 38 | 38 | AY.117 | 0.003212 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 38 | 38 | B.1.596 | 0.003311 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 33 | 33 | AY.37 | 0.01043 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 30 | 30 | AY.100 | 0.00138 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 30 | 30 | B.1.149 | 0.10274 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 29 | 29 | AY.36 | 0.004298 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 29 | 29 | B.1.243 | 0.002018 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 28 | 28 | B.1.427 | 0.001414 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 25 | 25 | AY.46.6 | 0.001805 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 24 | 24 | AY.118 | 0.001504 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 24 | 24 | AY.99.2 | 0.002212 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 22 | 22 | B.1.497 | 0.006925 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 21 | 21 | AY.7.1 | 0.002367 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 21 | 21 | B.1.577 | 0.014433 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 20 | 20 | AY.34 | 0.001939 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 18 | 18 | AY.39.1 | 0.000713 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 18 | 18 | AY.42 | 0.000724 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 17 | 17 | AY.33 | 0.001135 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 17 | 17 | AY.9.2 | 0.000624 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 17 | 17 | B.1.396 | 0.011997 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 15 | 15 | AY.120 | 0.000558 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 15 | 15 | AY.46.4 | 0.002468 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 15 | 15 | C.36.3 | 0.008508 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 14 | 14 | AY.85 | 0.00598 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 14 | 14 | B.1.575 | 0.004248 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 13 | 13 | B.1.621 | 0.001151 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 11 | 11 | AY.2 | 0.003917 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 10 | 10 | AY.4.5 | 0.001075 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 10 | 10 | AY.46.5 | 0.001984 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 10 | 10 | AY.75.1 | 0.001803 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 10 | 10 | AY.84 | 0.004374 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 10 | 10 | B | 0.001278 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 10 | 10 | B.1.1.317 | 0.004117 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 10 | 10 | B.1.241 | 0.008117 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 10 | 10 | B.1.466.2 | 0.003912 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 9 | 9 | AY.98 | 0.000711 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 9 | 9 | B.1.1.298 | 0.007759 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 9 | 9 | B.1.1.318 | 0.002716 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 9 | 9 | P.1.17 | 0.001456 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 7 | 7 | AY.111 | 0.001282 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 7 | 7 | AY.35 | 0.001631 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 7 | 7 | B.1.1.28 | 0.002179 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 6 | 6 | AY.83 | 0.010345 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 6 | 6 | AY.86 | 0.004979 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 6 | 6 | B.1.369 | 0.001711 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 6 | 6 | B.1.93 | 0.005602 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | A.1 | 0.001409 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.32 | 0.002662 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.5.4 | 0.001384 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.63 | 0.001934 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.67 | 0.002321 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.69 | 0.000933 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.70 | 0.001043 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | AY.91 | 0.003652 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | B.1.1.70 | 0.001705 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | B.1.258.11 | 0.001982 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | B.1.36.31 | 0.008757 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | B.1.561 | 0.001985 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 5 | 5 | P.3 | 0.007974 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | AY.105 | 0.002572 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | AY.55 | 0.00367 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | AY.66 | 0.004278 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | AY.94 | 0.001771 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | B.1.1.420 | 0.004024 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | B.1.400 | 0.001716 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | B.1.409 | 0.003125 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | B.1.438.1 | 0.000429 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | B.1.470 | 0.005618 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.1.1.377 | 0.004144 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.1.1.412 | 0.022901 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.1.1.526 | 0.010638 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.1.258.14 | 0.002941 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.1.320 | 0.003736 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.1.39 | 0.011719 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.1.588 | 0.00273 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | B.6 | 0.00273 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 3 | 3 | C.8 | 0.013393 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.107 | 0.000932 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.29.1 | 0.000441 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.46.2 | 0.001271 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.56 | 0.00321 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.7.2 | 0.001119 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.8 | 0.001212 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.9.2.1 | 0.003953 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.96 | 0.004149 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.1.265 | 0.006309 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.177.8 | 0.001505 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.239 | 0.002442 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.243.1 | 0.044444 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.3 | 0.005236 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.36.28 | 0.011494 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.371 | 0.002245 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.413 | 0.008511 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.587 | 0.003795 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | Q.7 | 0.002222 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AA.7 | 0.009174 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.145 | 0.037037 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.269 | 0.001353 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.29 | 0.010309 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.319 | 0.017544 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.380 | 0.009804 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.426 | 0.035714 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.445 | 0.037037 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.14 | 0.006098 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.27 | 0.009434 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.180 | 0.05 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.243.2 | 0.014493 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.35 | 0.008475 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.36.20 | 0.016949 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.602 | 0.006536 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.1.84 | 0.020833 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp4 | 204 | T204I | aCc | aTc | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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