CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 199

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4199I199II2962IsynatTatC194412570.6466059149-9151
ORF1ab/nsp4199I199II2962IsynatTatA19446870.3533959149-9151
ORF1ab/nsp4199I199delI2962deldelATT---606019149-9151
ORF1ab/nsp4199I199VI2962VnonsynAttGtt464619149-9151
ORF1ab/nsp4199I199TI2962TnonsynaTtaCt1090.99149-9151
ORF1ab/nsp4199I199TI2962TnonsynaTTaCC1010.19149-9151
ORF1ab/nsp4199I199MI2962MnonsynatTatG8819149-9151
ORF1ab/nsp4199I199FI2962FnonsynAttTtt5519149-9151
ORF1ab/nsp4199I199SI2962SnonsynaTtaGt540.89149-9151
ORF1ab/nsp4199I199SI2962SnonsynATTTCA510.29149-9151
ORF1ab/nsp4199I199NI2962NnonsynaTtaAt4419149-9151
ORF1ab/nsp4199I199YI2962YnonsynATtTAt3319149-9151
ORF1ab/nsp4199I199LI2962LnonsynAttCtt2219149-9151
ORF1ab/nsp4199I199HI2962HnonsynATtCAt1119149-9151
ORF1ab/nsp4199I199del1I2962del1delAtt-tt1119149-9151

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4199I199IatTatC12571944All0.00024
ORF1ab/nsp4199I199IatTatA6871944All0.000131
ORF1ab/nsp4199I199IatTatC892892B.1.1.1530.976999
ORF1ab/nsp4199I199IatTatA615615B.1.177.580.818908
ORF1ab/nsp4199I199IatTatC72102B.1.1.70.000064
ORF1ab/nsp4199I199IatTatA30102B.1.1.70.000027
ORF1ab/nsp4199I199IatTatC8888B.1.1.1920.203233
ORF1ab/nsp4199I199delATT---6060All0.000011
ORF1ab/nsp4199I199VAttGtt4646All0.000009
ORF1ab/nsp4199I199IatTatC4446B.1.10.000798
ORF1ab/nsp4199I199IatTatA246B.1.10.000036
ORF1ab/nsp4199I199IatTatC1224B.10.00011
ORF1ab/nsp4199I199IatTatA1224B.10.00011
ORF1ab/nsp4199I199IatTatC2020AY.390.000494
ORF1ab/nsp4199I199delATT---1919B.1.1.70.000017
ORF1ab/nsp4199I199IatTatC814AY.40.000012
ORF1ab/nsp4199I199IatTatA614AY.40.000009
ORF1ab/nsp4199I199IatTatC1111P.10.000173
ORF1ab/nsp4199I199TaTtaCt910All0.000002
ORF1ab/nsp4199I199TaTTaCC110All0
ORF1ab/nsp4199I199IatTatC1010B.1.4740.019011
ORF1ab/nsp4199I199VAttGtt99AY.30.00009
ORF1ab/nsp4199I199IatTatC99B.1.20.000079
ORF1ab/nsp4199I199MatTatG88All0.000002
ORF1ab/nsp4199I199IatTatC88B.1.2340.001056
ORF1ab/nsp4199I199IatTatC77B.1.1.5190.000278
ORF1ab/nsp4199I199IatTatA47B.1.1770.000053
ORF1ab/nsp4199I199IatTatC37B.1.1770.00004
ORF1ab/nsp4199I199IatTatC57B.1.617.20.000019
ORF1ab/nsp4199I199IatTatA27B.1.617.20.000008
ORF1ab/nsp4199I199IatTatC77B.1.6370.000512
ORF1ab/nsp4199I199IatTatA66A.280.015873
ORF1ab/nsp4199I199VAttGtt66AY.440.000037
ORF1ab/nsp4199I199FAttTtt55All0.000001
ORF1ab/nsp4199I199SaTtaGt45All0.000001
ORF1ab/nsp4199I199SATTTCA15All0
ORF1ab/nsp4199I199VAttGtt55AY.40.000008
ORF1ab/nsp4199I199delATT---55AY.4.50.000537
ORF1ab/nsp4199I199MatTatG55B.1.1.70.000004
ORF1ab/nsp4199I199NaTtaAt44All0.000001
ORF1ab/nsp4199I199IatTatC44AY.1010.001962
ORF1ab/nsp4199I199YATtTAt330.166667
ORF1ab/nsp4199I199NaTtaAt330.166667
ORF1ab/nsp4199I199YATtTAt33All0.000001
ORF1ab/nsp4199I199IatTatA33AY.1030.000019
ORF1ab/nsp4199I199IatTatA23AY.30.00002
ORF1ab/nsp4199I199IatTatC13AY.30.00001
ORF1ab/nsp4199I199delATT---33AY.430.000013
ORF1ab/nsp4199I199delATT---33B.1.1770.00004
ORF1ab/nsp4199I199IatTatC33B.1.3510.000089
ORF1ab/nsp4199I199IatTatC33B.1.4290.000071
ORF1ab/nsp4199I199delATT---33B.1.617.20.000011
ORF1ab/nsp4199I199IatTatC33R.10.00027
ORF1ab/nsp4199I199LAttCtt220.111111
ORF1ab/nsp4199I199VAttGtt220.111111
ORF1ab/nsp4199I199LAttCtt22All0
ORF1ab/nsp4199I199IatTatC22AY.1020.000053
ORF1ab/nsp4199I199IatTatC22AY.120.10.000642
ORF1ab/nsp4199I199VAttGtt22AY.250.000012
ORF1ab/nsp4199I199IatTatC12AY.250.000006
ORF1ab/nsp4199I199IatTatA12AY.250.000006
ORF1ab/nsp4199I199VAttGtt22AY.290.000032
ORF1ab/nsp4199I199IatTatC22AY.290.000032
ORF1ab/nsp4199I199MatTatG22AY.40.000003
ORF1ab/nsp4199I199IatTatC22AY.460.000208
ORF1ab/nsp4199I199IatTatC22AY.470.000062
ORF1ab/nsp4199I199FAttTtt22B.10.000018
ORF1ab/nsp4199I199TaTtaCt22B.1.1.70.000002
ORF1ab/nsp4199I199VAttGtt22B.1.1.70.000002
ORF1ab/nsp4199I199VAttGtt22B.1.1770.000026
ORF1ab/nsp4199I199delATT---22B.1.177.40.000422
ORF1ab/nsp4199I199VAttGtt22B.1.2210.000142
ORF1ab/nsp4199I199TaTtaCt22B.1.2360.004107
ORF1ab/nsp4199I199IatTatC22B.1.2430.000139
ORF1ab/nsp4199I199IatTatC22B.1.5260.000047
ORF1ab/nsp4199I199VAttGtt22B.1.617.20.000008
ORF1ab/nsp4199I199IatTatC22B.1.6200.001892
ORF1ab/nsp4199I199IatTatC22P.1.140.000096
ORF1ab/nsp4199I199FAttTtt110.055556
ORF1ab/nsp4199I199IatTatC11AA.10.007246
ORF1ab/nsp4199I199HATtCAt11All0
ORF1ab/nsp4199I199del1Att-tt11All0
ORF1ab/nsp4199I199IatTatC11AY.1000.000046
ORF1ab/nsp4199I199VAttGtt11AY.1030.000006
ORF1ab/nsp4199I199TaTtaCt11AY.1030.000006
ORF1ab/nsp4199I199VAttGtt11AY.1130.000142
ORF1ab/nsp4199I199VAttGtt11AY.1180.000063
ORF1ab/nsp4199I199IatTatC11AY.1200.000037
ORF1ab/nsp4199I199delATT---11AY.1200.000037
ORF1ab/nsp4199I199VAttGtt11AY.120.10.000321
ORF1ab/nsp4199I199VAttGtt11AY.200.000039
ORF1ab/nsp4199I199delATT---11AY.30.00001
ORF1ab/nsp4199I199delATT---11AY.330.000067
ORF1ab/nsp4199I199IatTatC11AY.39.10.00004
ORF1ab/nsp4199I199delATT---11AY.40.000002
ORF1ab/nsp4199I199TaTtaCt11AY.4.20.000022
ORF1ab/nsp4199I199IatTatC11AY.430.000004
ORF1ab/nsp4199I199IatTatA11AY.440.000006
ORF1ab/nsp4199I199VAttGtt11AY.450.000122
ORF1ab/nsp4199I199VAttGtt11AY.50.000021
ORF1ab/nsp4199I199IatTatC11AY.50.000021
ORF1ab/nsp4199I199SaTtaGt11AY.690.000187
ORF1ab/nsp4199I199delATT---11AY.780.001541
ORF1ab/nsp4199I199HATtCAt11AY.850.000427
ORF1ab/nsp4199I199SATTTCA11AY.850.000427
ORF1ab/nsp4199I199delATT---11AY.950.000761
ORF1ab/nsp4199I199IatTatC11AY.98.10.000048
ORF1ab/nsp4199I199delATT---11AY.990.001049
ORF1ab/nsp4199I199IatTatC11B0.000128
ORF1ab/nsp4199I199delATT---11B.10.000009
ORF1ab/nsp4199I199delATT---11B.1.10.000018
ORF1ab/nsp4199I199VAttGtt11B.1.10.000018
ORF1ab/nsp4199I199IatTatA11B.1.1.140.017241
ORF1ab/nsp4199I199IatTatC11B.1.1.2220.000204
ORF1ab/nsp4199I199VAttGtt11B.1.1.2220.000204
ORF1ab/nsp4199I199delATT---11B.1.1.250.000569
ORF1ab/nsp4199I199IatTatC11B.1.1.280.000311
ORF1ab/nsp4199I199delATT---11B.1.1.3060.000438
ORF1ab/nsp4199I199IatTatC11B.1.1.330.000421
ORF1ab/nsp4199I199IatTatC11B.1.1.3720.000689
ORF1ab/nsp4199I199delATT---11B.1.1.390.00051
ORF1ab/nsp4199I199delATT---11B.1.1.4090.002833
ORF1ab/nsp4199I199IatTatC11B.1.1.5230.001563
ORF1ab/nsp4199I199IatTatC11B.1.1.560.017857
ORF1ab/nsp4199I199NaTtaAt11B.1.1.70.000001
ORF1ab/nsp4199I199FAttTtt11B.1.1.70.000001
ORF1ab/nsp4199I199IatTatC11B.1.1470.000756
ORF1ab/nsp4199I199delATT---11B.1.1600.000031
ORF1ab/nsp4199I199delATT---11B.1.1610.017241
ORF1ab/nsp4199I199IatTatC11B.1.177.160.000664
ORF1ab/nsp4199I199delATT---11B.1.177.180.00116
ORF1ab/nsp4199I199IatTatC11B.1.177.210.000076
ORF1ab/nsp4199I199delATT---11B.1.177.630.002703
ORF1ab/nsp4199I199IatTatC11B.1.177.860.000183
ORF1ab/nsp4199I199delATT---11B.1.20.000009
ORF1ab/nsp4199I199IatTatC11B.1.214.20.0006
ORF1ab/nsp4199I199FAttTtt11B.1.2210.000071
ORF1ab/nsp4199I199IatTatC11B.1.2400.000216
ORF1ab/nsp4199I199delATT---11B.1.2420.018868
ORF1ab/nsp4199I199del1Att-tt11B.1.2430.00007
ORF1ab/nsp4199I199IatTatA11B.1.258.160.001637
ORF1ab/nsp4199I199IatTatC11B.1.3110.000275
ORF1ab/nsp4199I199VAttGtt11B.1.36.10.00114
ORF1ab/nsp4199I199delATT---11B.1.36.180.00042
ORF1ab/nsp4199I199delATT---11B.1.3670.000792
ORF1ab/nsp4199I199IatTatC11B.1.4040.001302
ORF1ab/nsp4199I199IatTatC11B.1.4080.00369
ORF1ab/nsp4199I199delATT---11B.1.4150.014286
ORF1ab/nsp4199I199IatTatC11B.1.4280.00102
ORF1ab/nsp4199I199SaTtaGt11B.1.4560.003268
ORF1ab/nsp4199I199TaTtaCt11B.1.5760.000907
ORF1ab/nsp4199I199IatTatC11B.1.6090.000479
ORF1ab/nsp4199I199SaTtaGt11B.1.617.20.000004
ORF1ab/nsp4199I199TaTTaCC11B.1.617.20.000004
ORF1ab/nsp4199I199VAttGtt11B.1.6210.000089
ORF1ab/nsp4199I199delATT---11B.150.017544
ORF1ab/nsp4199I199IatTatA11C.160.00106
ORF1ab/nsp4199I199SaTtaGt11C.350.000774
ORF1ab/nsp4199I199delATT---11C.36.30.000567
ORF1ab/nsp4199I199TaTtaCt11D.20.000075
ORF1ab/nsp4199I199IatTatC11D.20.000075
ORF1ab/nsp4199I199TaTtaCt11P.10.000016
ORF1ab/nsp4199I199MatTatG11P.1.10.000318
ORF1ab/nsp4199I199IatTatC11P.1.10.000318
ORF1ab/nsp4199I199delATT---11P.1.100.000269
ORF1ab/nsp4199I199IatTatC11P.1.120.000484
ORF1ab/nsp4199I199VAttGtt11P.1.140.000048