CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 189

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4189T189IT2952InonsynaCaaTa6503650319119-9121
ORF1ab/nsp4189T189TT2952TsynacAacG1971710.868029119-9121
ORF1ab/nsp4189T189TT2952TsynacAacC197230.1167519119-9121
ORF1ab/nsp4189T189TT2952TsynacAacT19730.01522849119-9121
ORF1ab/nsp4189T189delT2952deldelACA---636319119-9121
ORF1ab/nsp4189T189AT2952AnonsynAcaGca515119119-9121
ORF1ab/nsp4189T189KT2952KnonsynaCaaAa9919119-9121
ORF1ab/nsp4189T189XT2952XnonsynACaTAa530.69119-9121
ORF1ab/nsp4189T189XT2952XnonsynACaTGa520.49119-9121
ORF1ab/nsp4189T189LT2952LnonsynACaTTa4419119-9121
ORF1ab/nsp4189T189ST2952SnonsynAcaTca3319119-9121
ORF1ab/nsp4189T189RT2952RnonsynaCaaGa1119119-9121
ORF1ab/nsp4189T189NT2952NnonsynaCAaAC1119119-9121
ORF1ab/nsp4189T189del2T2952del2delaCAa--1119119-9121

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4189T189IaCaaTa65036503All0.001244
ORF1ab/nsp4189T189IaCaaTa19581958B.1.621.10.990389
ORF1ab/nsp4189T189IaCaaTa17091709B.1.6230.916845
ORF1ab/nsp4189T189IaCaaTa479479B.1.1.3020.993776
ORF1ab/nsp4189T189IaCaaTa459459B.1.5740.987097
ORF1ab/nsp4189T189IaCaaTa214214B.1.1.1591
ORF1ab/nsp4189T189TacAacG171197All0.000033
ORF1ab/nsp4189T189TacAacC23197All0.000004
ORF1ab/nsp4189T189TacAacT3197All0.000001
ORF1ab/nsp4189T189IaCaaTa152152B.1.1.70.000136
ORF1ab/nsp4189T189IaCaaTa145145B.1.1770.001909
ORF1ab/nsp4189T189IaCaaTa141141B.1.1.5190.005599
ORF1ab/nsp4189T189IaCaaTa138138AY.40.000215
ORF1ab/nsp4189T189IaCaaTa120120B.1.5960.010457
ORF1ab/nsp4189T189IaCaaTa115115B.10.001053
ORF1ab/nsp4189T189IaCaaTa8686B.1.6210.007613
ORF1ab/nsp4189T189IaCaaTa8383B.1.110.30.059626
ORF1ab/nsp4189T189IaCaaTa6868AY.30.000676
ORF1ab/nsp4189T189delACA---6363All0.000012
ORF1ab/nsp4189T189AAcaGca5151All0.00001
ORF1ab/nsp4189T189IaCaaTa4242AY.1030.000261
ORF1ab/nsp4189T189IaCaaTa4242B.1.617.20.000158
ORF1ab/nsp4189T189IaCaaTa4141AY.250.000247
ORF1ab/nsp4189T189IaCaaTa3636P.10.000567
ORF1ab/nsp4189T189IaCaaTa3434AY.430.000151
ORF1ab/nsp4189T189IaCaaTa3030AY.710.014252
ORF1ab/nsp4189T189TacAacG2329B.1.1.70.000021
ORF1ab/nsp4189T189TacAacC529B.1.1.70.000004
ORF1ab/nsp4189T189TacAacT129B.1.1.70.000001
ORF1ab/nsp4189T189IaCaaTa2929B.1.20.000255
ORF1ab/nsp4189T189TacAacG2828AY.440.00017
ORF1ab/nsp4189T189IaCaaTa2525AY.440.000152
ORF1ab/nsp4189T189TacAacG2525B.1.617.20.000094
ORF1ab/nsp4189T189delACA---2121B.1.1.70.000019
ORF1ab/nsp4189T189IaCaaTa1919B.1.2940.612903
ORF1ab/nsp4189T189TacAacG1818AY.40.000028
ORF1ab/nsp4189T189IaCaaTa1818B.1.10.000327
ORF1ab/nsp4189T189IaCaaTa1818B.1.1.2220.003672
ORF1ab/nsp4189T189IaCaaTa1616B.1.3240.025682
ORF1ab/nsp4189T189IaCaaTa1515B.1.4040.019531
ORF1ab/nsp4189T189TacAacC1414AY.420.000563
ORF1ab/nsp4189T189IaCaaTa1313B.1.360.001897
ORF1ab/nsp4189T189IaCaaTa1313B.1.5260.000306
ORF1ab/nsp4189T189AAcaGca1212B.10.00011
ORF1ab/nsp4189T189IaCaaTa1212B.1.1.4060.077922
ORF1ab/nsp4189T189KaCaaAa99All0.000002
ORF1ab/nsp4189T189IaCaaTa99B.1.1600.000281
ORF1ab/nsp4189T189TacAacG88AY.1020.000212
ORF1ab/nsp4189T189IaCaaTa88AY.1020.000212
ORF1ab/nsp4189T189IaCaaTa88AY.4.20.000174
ORF1ab/nsp4189T189AAcaGca88B.1.1.70.000007
ORF1ab/nsp4189T189TacAacG88B.1.2650.010165
ORF1ab/nsp4189T189TacAacG88R.10.00072
ORF1ab/nsp4189T189delACA---77AY.4.50.000752
ORF1ab/nsp4189T189IaCaaTa77B.1.2210.000497
ORF1ab/nsp4189T189IaCaaTa77B.1.3510.000208
ORF1ab/nsp4189T189TacAacG66AY.1030.000037
ORF1ab/nsp4189T189TacAacG66AY.250.000036
ORF1ab/nsp4189T189IaCaaTa66AY.260.00017
ORF1ab/nsp4189T189delACA---66AY.430.000027
ORF1ab/nsp4189T189IaCaaTa66AY.470.000187
ORF1ab/nsp4189T189XACaTAa35All0.000001
ORF1ab/nsp4189T189XACaTGa25All0
ORF1ab/nsp4189T189AAcaGca55AY.1100.000563
ORF1ab/nsp4189T189IaCaaTa55AY.1170.000423
ORF1ab/nsp4189T189IaCaaTa55B.1.1.280.001556
ORF1ab/nsp4189T189delACA---55B.1.1770.000066
ORF1ab/nsp4189T189IaCaaTa55B.1.3670.003962
ORF1ab/nsp4189T189IaCaaTa55B.1.4270.000252
ORF1ab/nsp4189T189IaCaaTa55B.1.5250.000566
ORF1ab/nsp4189T189IaCaaTa55B.1.617.10.000645
ORF1ab/nsp4189T189IaCaaTa55B.1.6370.000365
ORF1ab/nsp4189T189IaCaaTa55D.20.000375
ORF1ab/nsp4189T189LACaTTa440.222222
ORF1ab/nsp4189T189XACaTAa240.111111
ORF1ab/nsp4189T189XACaTGa240.111111
ORF1ab/nsp4189T189LACaTTa44All0.000001
ORF1ab/nsp4189T189AAcaGca44AY.1030.000025
ORF1ab/nsp4189T189AAcaGca44AY.40.000006
ORF1ab/nsp4189T189IaCaaTa44AY.46.30.003735
ORF1ab/nsp4189T189IaCaaTa44AY.530.00115
ORF1ab/nsp4189T189TacAacG44B.1.4290.000094
ORF1ab/nsp4189T189IaCaaTa44B.1.4700.005618
ORF1ab/nsp4189T189SAcaTca33All0.000001
ORF1ab/nsp4189T189IaCaaTa33AY.1190.000106
ORF1ab/nsp4189T189IaCaaTa33AY.230.000209
ORF1ab/nsp4189T189TacAacG33AY.290.000047
ORF1ab/nsp4189T189TacAacG33AY.350.000699
ORF1ab/nsp4189T189IaCaaTa33AY.390.000074
ORF1ab/nsp4189T189AAcaGca33AY.4.2.10.000447
ORF1ab/nsp4189T189IaCaaTa33AY.610.000314
ORF1ab/nsp4189T189IaCaaTa33AY.730.001996
ORF1ab/nsp4189T189TacAacG33B.1.10.000054
ORF1ab/nsp4189T189IaCaaTa33B.1.1.3120.005736
ORF1ab/nsp4189T189TacAacG33B.1.1.4320.003797
ORF1ab/nsp4189T189IaCaaTa33B.1.1.4340.001046
ORF1ab/nsp4189T189TacAacG33B.1.1.5190.000119
ORF1ab/nsp4189T189IaCaaTa33B.1.2320.001612
ORF1ab/nsp4189T189AAcaGca33B.1.2320.001612
ORF1ab/nsp4189T189AAcaGca33B.1.3510.000089
ORF1ab/nsp4189T189IaCaaTa33B.1.3610.003866
ORF1ab/nsp4189T189IaCaaTa33B.1.466.20.001174
ORF1ab/nsp4189T189IaCaaTa33P.20.00056
ORF1ab/nsp4189T189SAcaTca220.111111
ORF1ab/nsp4189T189IaCaaTa22AY.140.000176
ORF1ab/nsp4189T189IaCaaTa22AY.16.10.00094
ORF1ab/nsp4189T189IaCaaTa22AY.290.000032
ORF1ab/nsp4189T189IaCaaTa22AY.46.40.000329
ORF1ab/nsp4189T189IaCaaTa22AY.46.60.000144
ORF1ab/nsp4189T189TacAacG22AY.50.000041
ORF1ab/nsp4189T189IaCaaTa22AY.75.10.000361
ORF1ab/nsp4189T189IaCaaTa22AY.90.000135
ORF1ab/nsp4189T189TacAacT12AY.99.20.000092
ORF1ab/nsp4189T189TacAacG12AY.99.20.000092
ORF1ab/nsp4189T189IaCaaTa22B.1.1.2200.003717
ORF1ab/nsp4189T189IaCaaTa22B.1.1.2410.004141
ORF1ab/nsp4189T189IaCaaTa22B.1.1.3260.003521
ORF1ab/nsp4189T189IaCaaTa22B.1.1.4850.033333
ORF1ab/nsp4189T189TacAacG12B.1.1600.000031
ORF1ab/nsp4189T189TacAacC12B.1.1600.000031
ORF1ab/nsp4189T189delACA---22B.1.177.180.00232
ORF1ab/nsp4189T189delACA---22B.1.177.40.000422
ORF1ab/nsp4189T189IaCaaTa22B.1.2430.000139
ORF1ab/nsp4189T189IaCaaTa22B.1.2580.000133
ORF1ab/nsp4189T189IaCaaTa22B.1.36.170.000988
ORF1ab/nsp4189T189IaCaaTa22B.1.36.240.012346
ORF1ab/nsp4189T189IaCaaTa22B.1.4290.000047
ORF1ab/nsp4189T189IaCaaTa22B.1.6090.000959
ORF1ab/nsp4189T189KaCaaAa22B.1.617.20.000008
ORF1ab/nsp4189T189AAcaGca22B.1.617.20.000008
ORF1ab/nsp4189T189IaCaaTa22P.1.120.000968
ORF1ab/nsp4189T189TacAacC110.055556
ORF1ab/nsp4189T189NaCAaAC110.055556
ORF1ab/nsp4189T189KaCaaAa110.055556
ORF1ab/nsp4189T189KaCaaAa11A.20.000662
ORF1ab/nsp4189T189IaCaaTa11A.23.10.000704
ORF1ab/nsp4189T189del2aCAa--11All0
ORF1ab/nsp4189T189RaCaaGa11All0
ORF1ab/nsp4189T189NaCAaAC11All0
ORF1ab/nsp4189T189IaCaaTa11AY.1050.000643
ORF1ab/nsp4189T189AAcaGca11AY.1130.000142
ORF1ab/nsp4189T189IaCaaTa11AY.1180.000063
ORF1ab/nsp4189T189TacAacG11AY.1190.000035
ORF1ab/nsp4189T189IaCaaTa11AY.120.000316
ORF1ab/nsp4189T189delACA---11AY.1200.000037
ORF1ab/nsp4189T189IaCaaTa11AY.1200.000037
ORF1ab/nsp4189T189IaCaaTa11AY.160.00038
ORF1ab/nsp4189T189TacAacG11AY.190.00114
ORF1ab/nsp4189T189IaCaaTa11AY.200.000039
ORF1ab/nsp4189T189TacAacG11AY.30.00001
ORF1ab/nsp4189T189delACA---11AY.30.00001
ORF1ab/nsp4189T189IaCaaTa11AY.320.000532
ORF1ab/nsp4189T189delACA---11AY.330.000067
ORF1ab/nsp4189T189IaCaaTa11AY.330.000067
ORF1ab/nsp4189T189TacAacG11AY.390.000025
ORF1ab/nsp4189T189KaCaaAa11AY.40.000002
ORF1ab/nsp4189T189delACA---11AY.40.000002
ORF1ab/nsp4189T189TacAacG11AY.4.20.000022
ORF1ab/nsp4189T189IaCaaTa11AY.4.50.000107
ORF1ab/nsp4189T189IaCaaTa11AY.420.00004
ORF1ab/nsp4189T189KaCaaAa11AY.430.000004
ORF1ab/nsp4189T189TacAacG11AY.430.000004
ORF1ab/nsp4189T189del2aCAa--11AY.440.000006
ORF1ab/nsp4189T189AAcaGca11AY.440.000006
ORF1ab/nsp4189T189IaCaaTa11AY.450.000122
ORF1ab/nsp4189T189TacAacG11AY.470.000031
ORF1ab/nsp4189T189IaCaaTa11AY.50.000021
ORF1ab/nsp4189T189IaCaaTa11AY.520.000814
ORF1ab/nsp4189T189IaCaaTa11AY.540.000095
ORF1ab/nsp4189T189AAcaGca11AY.60.000041
ORF1ab/nsp4189T189AAcaGca11AY.610.000105
ORF1ab/nsp4189T189IaCaaTa11AY.660.00107
ORF1ab/nsp4189T189TacAacG11AY.690.000187
ORF1ab/nsp4189T189TacAacG11AY.7.10.000113
ORF1ab/nsp4189T189TacAacG11AY.710.000475
ORF1ab/nsp4189T189IaCaaTa11AY.750.000056
ORF1ab/nsp4189T189IaCaaTa11AY.770.001127
ORF1ab/nsp4189T189IaCaaTa11AY.790.001211
ORF1ab/nsp4189T189IaCaaTa11AY.830.001724
ORF1ab/nsp4189T189IaCaaTa11AY.870.000833
ORF1ab/nsp4189T189IaCaaTa11AY.880.000884
ORF1ab/nsp4189T189delACA---11AY.90.000068
ORF1ab/nsp4189T189IaCaaTa11AY.9.10.000084
ORF1ab/nsp4189T189IaCaaTa11AY.9.20.000037
ORF1ab/nsp4189T189delACA---11AY.950.000761
ORF1ab/nsp4189T189IaCaaTa11AY.980.000079
ORF1ab/nsp4189T189IaCaaTa11AY.98.10.000048
ORF1ab/nsp4189T189delACA---11B.10.000009
ORF1ab/nsp4189T189XACaTAa11B.1.10.000018
ORF1ab/nsp4189T189KaCaaAa11B.1.10.000018
ORF1ab/nsp4189T189delACA---11B.1.10.000018
ORF1ab/nsp4189T189IaCaaTa11B.1.1.10.000327
ORF1ab/nsp4189T189IaCaaTa11B.1.1.1280.007092
ORF1ab/nsp4189T189TacAacG11B.1.1.1570.000913
ORF1ab/nsp4189T189IaCaaTa11B.1.1.1890.001513
ORF1ab/nsp4189T189IaCaaTa11B.1.1.2140.000055
ORF1ab/nsp4189T189IaCaaTa11B.1.1.250.000569
ORF1ab/nsp4189T189IaCaaTa11B.1.1.2530.002506
ORF1ab/nsp4189T189IaCaaTa11B.1.1.3060.000438
ORF1ab/nsp4189T189delACA---11B.1.1.3060.000438
ORF1ab/nsp4189T189delACA---11B.1.1.390.00051
ORF1ab/nsp4189T189delACA---11B.1.1.4090.002833
ORF1ab/nsp4189T189AAcaGca11B.1.1.5260.003546
ORF1ab/nsp4189T189IaCaaTa11B.1.1.630.000386
ORF1ab/nsp4189T189IaCaaTa11B.1.1110.001175
ORF1ab/nsp4189T189KaCaaAa11B.1.1600.000031
ORF1ab/nsp4189T189IaCaaTa11B.1.177.210.000076
ORF1ab/nsp4189T189TacAacG11B.1.177.210.000076
ORF1ab/nsp4189T189delACA---11B.1.177.630.002703
ORF1ab/nsp4189T189IaCaaTa11B.1.177.730.000566
ORF1ab/nsp4189T189IaCaaTa11B.1.177.810.000189
ORF1ab/nsp4189T189delACA---11B.1.20.000009
ORF1ab/nsp4189T189TacAacC11B.1.20.000009
ORF1ab/nsp4189T189IaCaaTa11B.1.2340.000132
ORF1ab/nsp4189T189AAcaGca11B.1.2340.000132
ORF1ab/nsp4189T189IaCaaTa11B.1.2370.004975
ORF1ab/nsp4189T189IaCaaTa11B.1.2400.000216
ORF1ab/nsp4189T189delACA---11B.1.2420.018868
ORF1ab/nsp4189T189TacAacG11B.1.2430.00007
ORF1ab/nsp4189T189IaCaaTa11B.1.30.002618
ORF1ab/nsp4189T189TacAacG11B.1.3510.00003
ORF1ab/nsp4189T189IaCaaTa11B.1.351.50.0006
ORF1ab/nsp4189T189delACA---11B.1.36.170.000494
ORF1ab/nsp4189T189delACA---11B.1.36.180.00042
ORF1ab/nsp4189T189IaCaaTa11B.1.36.220.001208
ORF1ab/nsp4189T189IaCaaTa11B.1.36.290.000517
ORF1ab/nsp4189T189IaCaaTa11B.1.36.380.001642
ORF1ab/nsp4189T189IaCaaTa11B.1.3660.004878
ORF1ab/nsp4189T189delACA---11B.1.3670.000792
ORF1ab/nsp4189T189IaCaaTa11B.1.3690.000285
ORF1ab/nsp4189T189IaCaaTa11B.1.3750.00082
ORF1ab/nsp4189T189IaCaaTa11B.1.3890.001002
ORF1ab/nsp4189T189IaCaaTa11B.1.3950.007042
ORF1ab/nsp4189T189IaCaaTa11B.1.3990.001934
ORF1ab/nsp4189T189delACA---11B.1.4150.014286
ORF1ab/nsp4189T189TacAacG11B.1.466.20.000391
ORF1ab/nsp4189T189IaCaaTa11B.1.4850.014925
ORF1ab/nsp4189T189IaCaaTa11B.1.5060.02381
ORF1ab/nsp4189T189SAcaTca11B.1.5640.000426
ORF1ab/nsp4189T189IaCaaTa11B.1.5760.000907
ORF1ab/nsp4189T189IaCaaTa11B.1.5790.011236
ORF1ab/nsp4189T189TacAacG11B.1.5900.004545
ORF1ab/nsp4189T189TacAacC11B.1.5960.000087
ORF1ab/nsp4189T189AAcaGca11B.1.5960.000087
ORF1ab/nsp4189T189TacAacG11B.1.6050.005952
ORF1ab/nsp4189T189delACA---11B.1.617.20.000004
ORF1ab/nsp4189T189KaCaaAa11B.1.6230.000536
ORF1ab/nsp4189T189IaCaaTa11B.1.810.021277
ORF1ab/nsp4189T189delACA---11B.150.017544
ORF1ab/nsp4189T189IaCaaTa11B.4.20.066667
ORF1ab/nsp4189T189RaCaaGa11C.350.000774
ORF1ab/nsp4189T189IaCaaTa11C.370.000116
ORF1ab/nsp4189T189TacAacT11C.370.000116
ORF1ab/nsp4189T189TacAacG11P.10.000016
ORF1ab/nsp4189T189IaCaaTa11P.1.140.000048
ORF1ab/nsp4189T189IaCaaTa11P.1.150.000232