CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 186

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4186R186RR2949RsyncgCcgT454044600.9823799110-9112
ORF1ab/nsp4186R186RR2949RsyncgCcgA4540740.01629969110-9112
ORF1ab/nsp4186R186RR2949RsyncgCcgG454060.001321599110-9112
ORF1ab/nsp4186R186CR2949CnonsynCgcTgc46246219110-9112
ORF1ab/nsp4186R186HR2949HnonsyncGccAc35435419110-9112
ORF1ab/nsp4186R186delR2949deldelCGC---585819110-9112
ORF1ab/nsp4186R186LR2949LnonsyncGccTc30250.8333339110-9112
ORF1ab/nsp4186R186LR2949LnonsyncGCcTG3030.19110-9112
ORF1ab/nsp4186R186LR2949LnonsynCGCTTG3020.06666679110-9112
ORF1ab/nsp4186R186PR2949PnonsyncGccCc25200.89110-9112
ORF1ab/nsp4186R186PR2949PnonsyncGCcCG2550.29110-9112
ORF1ab/nsp4186R186GR2949GnonsynCgcGgc5519110-9112
ORF1ab/nsp4186R186SR2949SnonsynCgcAgc530.69110-9112
ORF1ab/nsp4186R186SR2949SnonsynCGCTCG520.49110-9112
ORF1ab/nsp4186R186del1R2949del1delcgCcg-420.59110-9112
ORF1ab/nsp4186R186del1R2949del1delCgc-gc410.259110-9112
ORF1ab/nsp4186R186del1R2949del1delcGcc-c410.259110-9112
ORF1ab/nsp4186R186del2R2949del2delcGCc--320.6666679110-9112
ORF1ab/nsp4186R186del2R2949del2delCGc--c310.3333339110-9112
ORF1ab/nsp4186R186QR2949QnonsyncGCcAG2219110-9112
ORF1ab/nsp4186R186WR2949WnonsynCgCTgG2219110-9112
ORF1ab/nsp4186R186FR2949FnonsynCGcTTc2219110-9112
ORF1ab/nsp4186R186VR2949VnonsynCGCGTG1119110-9112

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4186R186RcgCcgT44604540All0.000853
ORF1ab/nsp4186R186RcgCcgA744540All0.000014
ORF1ab/nsp4186R186RcgCcgG64540All0.000001
ORF1ab/nsp4186R186RcgCcgT26432643AY.40.004114
ORF1ab/nsp4186R186CCgcTgc462462All0.000088
ORF1ab/nsp4186R186HcGccAc354354All0.000068
ORF1ab/nsp4186R186RcgCcgT265282B.1.1.70.000237
ORF1ab/nsp4186R186RcgCcgA17282B.1.1.70.000015
ORF1ab/nsp4186R186RcgCcgT179179P.1.140.008556
ORF1ab/nsp4186R186RcgCcgT174174AY.9.10.014568
ORF1ab/nsp4186R186RcgCcgT168172AY.250.00101
ORF1ab/nsp4186R186RcgCcgA4172AY.250.000024
ORF1ab/nsp4186R186RcgCcgT145146AY.1030.0009
ORF1ab/nsp4186R186RcgCcgA1146AY.1030.000006
ORF1ab/nsp4186R186RcgCcgT106108AY.440.000645
ORF1ab/nsp4186R186RcgCcgA2108AY.440.000012
ORF1ab/nsp4186R186CCgcTgc9999AY.40.000154
ORF1ab/nsp4186R186HcGccAc9696AY.40.000149
ORF1ab/nsp4186R186RcgCcgT7376B.1.20.000643
ORF1ab/nsp4186R186RcgCcgA376B.1.20.000026
ORF1ab/nsp4186R186RcgCcgT7172B.1.617.20.000267
ORF1ab/nsp4186R186RcgCcgA172B.1.617.20.000004
ORF1ab/nsp4186R186RcgCcgT6262AY.840.027122
ORF1ab/nsp4186R186delCGC---5858All0.000011
ORF1ab/nsp4186R186CCgcTgc5454B.1.1.70.000048
ORF1ab/nsp4186R186RcgCcgT5151B.1.258.240.548387
ORF1ab/nsp4186R186HcGccAc4646B.1.1.70.000041
ORF1ab/nsp4186R186CCgcTgc3838B.1.617.20.000143
ORF1ab/nsp4186R186RcgCcgT2536AY.430.000111
ORF1ab/nsp4186R186RcgCcgA1136AY.430.000049
ORF1ab/nsp4186R186RcgCcgT3636P.10.000567
ORF1ab/nsp4186R186HcGccAc3434B.1.1770.000448
ORF1ab/nsp4186R186RcgCcgT3233B.1.3510.000951
ORF1ab/nsp4186R186RcgCcgA133B.1.3510.00003
ORF1ab/nsp4186R186LcGccTc2530All0.000005
ORF1ab/nsp4186R186LcGCcTG330All0.000001
ORF1ab/nsp4186R186LCGCTTG230All0
ORF1ab/nsp4186R186RcgCcgT2828AY.390.000692
ORF1ab/nsp4186R186RcgCcgT2626B.1.1.5190.001032
ORF1ab/nsp4186R186PcGccCc2025All0.000004
ORF1ab/nsp4186R186PcGCcCG525All0.000001
ORF1ab/nsp4186R186CCgcTgc2525AY.430.000111
ORF1ab/nsp4186R186RcgCcgT2424AY.1200.000892
ORF1ab/nsp4186R186RcgCcgT2224B.1.10.000399
ORF1ab/nsp4186R186RcgCcgA124B.1.10.000018
ORF1ab/nsp4186R186RcgCcgG124B.1.10.000018
ORF1ab/nsp4186R186CCgcTgc2222AY.1030.000137
ORF1ab/nsp4186R186RcgCcgT1822B.10.000165
ORF1ab/nsp4186R186RcgCcgA322B.10.000027
ORF1ab/nsp4186R186RcgCcgG122B.10.000009
ORF1ab/nsp4186R186CCgcTgc1919AY.440.000116
ORF1ab/nsp4186R186RcgCcgT1919B.1.5250.00215
ORF1ab/nsp4186R186RcgCcgT1818B.1.1.4320.022785
ORF1ab/nsp4186R186RcgCcgT1718C.370.001973
ORF1ab/nsp4186R186RcgCcgA118C.370.000116
ORF1ab/nsp4186R186RcgCcgT1616AY.30.000159
ORF1ab/nsp4186R186delCGC---1616B.1.1.70.000014
ORF1ab/nsp4186R186CCgcTgc1515D.20.001126
ORF1ab/nsp4186R186HcGccAc1212B.1.617.20.000045
ORF1ab/nsp4186R186RcgCcgT1111AY.1110.002015
ORF1ab/nsp4186R186RcgCcgA911AY.1190.000318
ORF1ab/nsp4186R186RcgCcgT211AY.1190.000071
ORF1ab/nsp4186R186CCgcTgc1111AY.30.000109
ORF1ab/nsp4186R186RcgCcgT1111B.1.1.3170.004529
ORF1ab/nsp4186R186RcgCcgT1111Q.10.00139
ORF1ab/nsp4186R186CCgcTgc1010B.1.20.000088
ORF1ab/nsp4186R186HcGccAc1010B.1.20.000088
ORF1ab/nsp4186R186HcGccAc99AY.1030.000056
ORF1ab/nsp4186R186CCgcTgc99AY.290.000142
ORF1ab/nsp4186R186RcgCcgT99AY.740.001041
ORF1ab/nsp4186R186CCgcTgc99B.10.000082
ORF1ab/nsp4186R186RcgCcgT99B.1.177.820.004296
ORF1ab/nsp4186R186RcgCcgT88AY.1020.000212
ORF1ab/nsp4186R186HcGccAc88AY.3.10.000682
ORF1ab/nsp4186R186CCgcTgc88AY.50.000165
ORF1ab/nsp4186R186RcgCcgT88B.1.1.1350.037559
ORF1ab/nsp4186R186RcgCcgT88B.1.1.4860.012618
ORF1ab/nsp4186R186HcGccAc88Q.20.004908
ORF1ab/nsp4186R186CCgcTgc77AY.1020.000186
ORF1ab/nsp4186R186RcgCcgT77AY.200.000272
ORF1ab/nsp4186R186CCgcTgc77AY.250.000042
ORF1ab/nsp4186R186HcGccAc77AY.30.00007
ORF1ab/nsp4186R186RcgCcgA77AY.340.000679
ORF1ab/nsp4186R186delCGC---77AY.4.50.000752
ORF1ab/nsp4186R186RcgCcgT77AY.4.50.000752
ORF1ab/nsp4186R186PcGccCc77B.1.1.70.000006
ORF1ab/nsp4186R186HcGccAc77B.1.258.110.002774
ORF1ab/nsp4186R186HcGccAc77B.400.00255
ORF1ab/nsp4186R186LcGccTc260.111111
ORF1ab/nsp4186R186LCGCTTG260.111111
ORF1ab/nsp4186R186LcGCcTG260.111111
ORF1ab/nsp4186R186HcGccAc66AY.16.10.00282
ORF1ab/nsp4186R186HcGccAc66AY.250.000036
ORF1ab/nsp4186R186delCGC---66AY.430.000027
ORF1ab/nsp4186R186HcGccAc66AY.440.000037
ORF1ab/nsp4186R186CCgcTgc66AY.470.000187
ORF1ab/nsp4186R186RcgCcgT66AY.480.002791
ORF1ab/nsp4186R186CCgcTgc66B.1.1770.000079
ORF1ab/nsp4186R186GCgcGgc55All0.000001
ORF1ab/nsp4186R186SCgcAgc35All0.000001
ORF1ab/nsp4186R186SCGCTCG25All0
ORF1ab/nsp4186R186LcGccTc55AY.250.00003
ORF1ab/nsp4186R186RcgCcgT35AY.290.000047
ORF1ab/nsp4186R186RcgCcgA25AY.290.000032
ORF1ab/nsp4186R186CCgcTgc55AY.390.000124
ORF1ab/nsp4186R186RcgCcgT55B.1.1.2140.000277
ORF1ab/nsp4186R186delCGC---55B.1.1770.000066
ORF1ab/nsp4186R186RcgCcgT55B.1.5260.000118
ORF1ab/nsp4186R186PcGCcCG440.222222
ORF1ab/nsp4186R186RcgCcgG340.166667
ORF1ab/nsp4186R186RcgCcgA140.055556
ORF1ab/nsp4186R186del1cgCcg-24All0
ORF1ab/nsp4186R186del1Cgc-gc14All0
ORF1ab/nsp4186R186del1cGcc-c14All0
ORF1ab/nsp4186R186RcgCcgT34AY.1000.000138
ORF1ab/nsp4186R186RcgCcgA14AY.1000.000046
ORF1ab/nsp4186R186CCgcTgc44AY.360.000593
ORF1ab/nsp4186R186RcgCcgT44AY.39.10.000158
ORF1ab/nsp4186R186HcGccAc44AY.430.000018
ORF1ab/nsp4186R186CCgcTgc44B.1.10.000073
ORF1ab/nsp4186R186PcGccCc34B.1.10.000054
ORF1ab/nsp4186R186PcGCcCG14B.1.10.000018
ORF1ab/nsp4186R186CCgcTgc44B.1.1.5190.000159
ORF1ab/nsp4186R186RcgCcgT44B.1.1770.000053
ORF1ab/nsp4186R186RcgCcgT44B.1.2580.000266
ORF1ab/nsp4186R186HcGccAc44B.1.3510.000119
ORF1ab/nsp4186R186HcGccAc44B.1.4270.000202
ORF1ab/nsp4186R186RcgCcgT44B.1.6280.001409
ORF1ab/nsp4186R186HcGccAc44C.370.000464
ORF1ab/nsp4186R186del2cGCc--23All0
ORF1ab/nsp4186R186del2CGc--c13All0
ORF1ab/nsp4186R186RcgCcgA23AY.1170.000169
ORF1ab/nsp4186R186RcgCcgT13AY.1170.000085
ORF1ab/nsp4186R186RcgCcgT33AY.1180.000188
ORF1ab/nsp4186R186HcGccAc33AY.1190.000106
ORF1ab/nsp4186R186RcgCcgT33AY.29.10.000662
ORF1ab/nsp4186R186CCgcTgc33AY.300.001187
ORF1ab/nsp4186R186RcgCcgT33AY.330.0002
ORF1ab/nsp4186R186HcGccAc33AY.4.20.000065
ORF1ab/nsp4186R186RcgCcgT33AY.5.30.001012
ORF1ab/nsp4186R186RcgCcgT33AY.60.000123
ORF1ab/nsp4186R186HcGccAc33AY.730.001996
ORF1ab/nsp4186R186CCgcTgc33AY.9.10.000251
ORF1ab/nsp4186R186LcGccTc33B.10.000027
ORF1ab/nsp4186R186HcGccAc33B.1.10.000054
ORF1ab/nsp4186R186RcgCcgT33B.1.1.1330.025424
ORF1ab/nsp4186R186CCgcTgc33B.1.1.2430.012245
ORF1ab/nsp4186R186RcgCcgT33B.1.1.2840.000322
ORF1ab/nsp4186R186RcgCcgT33B.1.1.3180.000905
ORF1ab/nsp4186R186HcGccAc33B.1.177.210.000229
ORF1ab/nsp4186R186HcGccAc33B.1.177.230.009709
ORF1ab/nsp4186R186HcGccAc33B.1.2210.000213
ORF1ab/nsp4186R186RcgCcgT33B.1.36.290.001552
ORF1ab/nsp4186R186RcgCcgT33B.1.4270.000151
ORF1ab/nsp4186R186CCgcTgc33B.1.4290.000071
ORF1ab/nsp4186R186HcGccAc33B.1.5250.000339
ORF1ab/nsp4186R186RcgCcgT33B.1.5950.000783
ORF1ab/nsp4186R186RcgCcgT33Q.60.019868
ORF1ab/nsp4186R186HcGccAc33R.10.00027
ORF1ab/nsp4186R186FCGcTTc220.111111
ORF1ab/nsp4186R186CCgcTgc220.111111
ORF1ab/nsp4186R186SCGCTCG220.111111
ORF1ab/nsp4186R186WCgCTgG220.111111
ORF1ab/nsp4186R186WCgCTgG22All0
ORF1ab/nsp4186R186FCGcTTc22All0
ORF1ab/nsp4186R186QcGCcAG22All0
ORF1ab/nsp4186R186HcGccAc22AY.1020.000053
ORF1ab/nsp4186R186CCgcTgc22AY.1180.000125
ORF1ab/nsp4186R186CCgcTgc22AY.1190.000071
ORF1ab/nsp4186R186LcGccTc22AY.120.000632
ORF1ab/nsp4186R186HcGccAc22AY.120.10.000642
ORF1ab/nsp4186R186CCgcTgc22AY.1210.000271
ORF1ab/nsp4186R186HcGccAc22AY.140.000176
ORF1ab/nsp4186R186CCgcTgc22AY.230.000139
ORF1ab/nsp4186R186CCgcTgc22AY.23.10.000835
ORF1ab/nsp4186R186CCgcTgc22AY.29.10.000441
ORF1ab/nsp4186R186CCgcTgc22AY.330.000134
ORF1ab/nsp4186R186RcgCcgT22AY.370.000632
ORF1ab/nsp4186R186HcGccAc22AY.390.000049
ORF1ab/nsp4186R186CCgcTgc22AY.39.10.000079
ORF1ab/nsp4186R186RcgCcgT22AY.39.20.003082
ORF1ab/nsp4186R186LcGccTc22AY.40.000003
ORF1ab/nsp4186R186PcGccCc22AY.40.000003
ORF1ab/nsp4186R186RcgCcgT22AY.4.20.000043
ORF1ab/nsp4186R186RcgCcgT22AY.420.00008
ORF1ab/nsp4186R186CCgcTgc22AY.420.00008
ORF1ab/nsp4186R186GCgcGgc22AY.440.000012
ORF1ab/nsp4186R186CCgcTgc22AY.460.000208
ORF1ab/nsp4186R186RcgCcgT22AY.460.000208
ORF1ab/nsp4186R186CCgcTgc22AY.46.60.000144
ORF1ab/nsp4186R186RcgCcgT22AY.470.000062
ORF1ab/nsp4186R186HcGccAc22AY.50.000041
ORF1ab/nsp4186R186RcgCcgT22AY.50.000041
ORF1ab/nsp4186R186HcGccAc22AY.5.30.000675
ORF1ab/nsp4186R186CCgcTgc22AY.60.000082
ORF1ab/nsp4186R186HcGccAc22AY.630.000774
ORF1ab/nsp4186R186RcgCcgA12AY.750.000056
ORF1ab/nsp4186R186RcgCcgT12AY.750.000056
ORF1ab/nsp4186R186RcgCcgT22AY.780.003082
ORF1ab/nsp4186R186PcGccCc22AY.900.001369
ORF1ab/nsp4186R186RcgCcgT22AY.920.000575
ORF1ab/nsp4186R186RcgCcgT22AY.980.000158
ORF1ab/nsp4186R186CCgcTgc22AY.980.000158
ORF1ab/nsp4186R186HcGccAc22AY.99.10.003106
ORF1ab/nsp4186R186HcGccAc22B.10.000018
ORF1ab/nsp4186R186RcgCcgT22B.1.1.10.000653
ORF1ab/nsp4186R186CCgcTgc22B.1.1.2140.000111
ORF1ab/nsp4186R186HcGccAc22B.1.1.390.001019
ORF1ab/nsp4186R186del2cGCc--22B.1.1.70.000002
ORF1ab/nsp4186R186LcGccTc22B.1.1.70.000002
ORF1ab/nsp4186R186delCGC---22B.1.177.180.00232
ORF1ab/nsp4186R186delCGC---22B.1.177.40.000422
ORF1ab/nsp4186R186RcgCcgT22B.1.177.810.000379
ORF1ab/nsp4186R186CCgcTgc22B.1.177.810.000379
ORF1ab/nsp4186R186CCgcTgc22B.1.2210.000142
ORF1ab/nsp4186R186RcgCcgT22B.1.2340.000264
ORF1ab/nsp4186R186CCgcTgc22B.1.3510.000059
ORF1ab/nsp4186R186HcGccAc22B.1.351.20.000605
ORF1ab/nsp4186R186CCgcTgc22B.1.36.180.00084
ORF1ab/nsp4186R186RcgCcgT22B.1.438.10.000215
ORF1ab/nsp4186R186RcgCcgT12B.1.4990.00105
ORF1ab/nsp4186R186RcgCcgA12B.1.4990.00105
ORF1ab/nsp4186R186RcgCcgT22B.1.5960.000174
ORF1ab/nsp4186R186CCgcTgc22B.1.6090.000959
ORF1ab/nsp4186R186LcGccTc12B.1.617.20.000004
ORF1ab/nsp4186R186LcGCcTG12B.1.617.20.000004
ORF1ab/nsp4186R186RcgCcgT22B.1.80.003945
ORF1ab/nsp4186R186RcgCcgT22D.20.00015
ORF1ab/nsp4186R186HcGccAc22P.10.000032
ORF1ab/nsp4186R186HcGccAc22P.1.120.000968
ORF1ab/nsp4186R186CCgcTgc22R.10.00018
ORF1ab/nsp4186R186CCgcTgc11A.270.001656
ORF1ab/nsp4186R186RcgCcgT11AD.20.000219
ORF1ab/nsp4186R186CCgcTgc11AE.80.000489
ORF1ab/nsp4186R186VCGCGTG11All0
ORF1ab/nsp4186R186CCgcTgc11AT.10.005128
ORF1ab/nsp4186R186RcgCcgT11AY.10.000396
ORF1ab/nsp4186R186CCgcTgc11AY.1000.000046
ORF1ab/nsp4186R186CCgcTgc11AY.1100.000113
ORF1ab/nsp4186R186RcgCcgT11AY.1140.000231
ORF1ab/nsp4186R186HcGccAc11AY.1140.000231
ORF1ab/nsp4186R186RcgCcgA11AY.1160.000287
ORF1ab/nsp4186R186HcGccAc11AY.1180.000063
ORF1ab/nsp4186R186delCGC---11AY.1200.000037
ORF1ab/nsp4186R186CCgcTgc11AY.1200.000037
ORF1ab/nsp4186R186CCgcTgc11AY.120.10.000321
ORF1ab/nsp4186R186RcgCcgT11AY.160.00038
ORF1ab/nsp4186R186CCgcTgc11AY.200.000039
ORF1ab/nsp4186R186CCgcTgc11AY.240.000431
ORF1ab/nsp4186R186HcGccAc11AY.260.000028
ORF1ab/nsp4186R186RcgCcgT11AY.260.000028
ORF1ab/nsp4186R186SCgcAgc11AY.290.000016
ORF1ab/nsp4186R186QcGCcAG11AY.30.00001
ORF1ab/nsp4186R186delCGC---11AY.30.00001
ORF1ab/nsp4186R186RcgCcgT11AY.3.10.000085
ORF1ab/nsp4186R186delCGC---11AY.330.000067
ORF1ab/nsp4186R186CCgcTgc11AY.340.000097
ORF1ab/nsp4186R186RcgCcgT11AY.34.10.00051
ORF1ab/nsp4186R186HcGccAc11AY.350.000233
ORF1ab/nsp4186R186CCgcTgc11AY.350.000233
ORF1ab/nsp4186R186LcGccTc11AY.390.000025
ORF1ab/nsp4186R186PcGccCc11AY.39.10.00004
ORF1ab/nsp4186R186HcGccAc11AY.39.10.00004
ORF1ab/nsp4186R186delCGC---11AY.40.000002
ORF1ab/nsp4186R186LcGccTc11AY.4.20.000022
ORF1ab/nsp4186R186CCgcTgc11AY.4.50.000107
ORF1ab/nsp4186R186LcGccTc11AY.440.000006
ORF1ab/nsp4186R186RcgCcgT11AY.450.000122
ORF1ab/nsp4186R186CCgcTgc11AY.450.000122
ORF1ab/nsp4186R186RcgCcgT11AY.46.30.000934
ORF1ab/nsp4186R186LcGccTc11AY.50.000021
ORF1ab/nsp4186R186LcGccTc11AY.5.30.000337
ORF1ab/nsp4186R186RcgCcgT11AY.520.000814
ORF1ab/nsp4186R186RcgCcgT11AY.540.000095
ORF1ab/nsp4186R186HcGccAc11AY.590.00053
ORF1ab/nsp4186R186RcgCcgT11AY.590.00053
ORF1ab/nsp4186R186RcgCcgT11AY.610.000105
ORF1ab/nsp4186R186HcGccAc11AY.610.000105
ORF1ab/nsp4186R186RcgCcgT11AY.680.000274
ORF1ab/nsp4186R186CCgcTgc11AY.7.10.000113
ORF1ab/nsp4186R186CCgcTgc11AY.860.00083
ORF1ab/nsp4186R186RcgCcgT11AY.880.000884
ORF1ab/nsp4186R186delCGC---11AY.90.000068
ORF1ab/nsp4186R186HcGccAc11AY.9.20.000037
ORF1ab/nsp4186R186CCgcTgc11AY.930.000273
ORF1ab/nsp4186R186CCgcTgc11AY.940.000443
ORF1ab/nsp4186R186CCgcTgc11AY.950.000761
ORF1ab/nsp4186R186delCGC---11AY.950.000761
ORF1ab/nsp4186R186CCgcTgc11AY.960.002075
ORF1ab/nsp4186R186PcGccCc11AY.980.000079
ORF1ab/nsp4186R186RcgCcgA11AY.98.10.000048
ORF1ab/nsp4186R186CCgcTgc11AY.98.10.000048
ORF1ab/nsp4186R186CCgcTgc11B0.000128
ORF1ab/nsp4186R186RcgCcgT11B0.000128
ORF1ab/nsp4186R186PcGccCc11B.10.000009
ORF1ab/nsp4186R186delCGC---11B.10.000009
ORF1ab/nsp4186R186QcGCcAG11B.1.10.000018
ORF1ab/nsp4186R186delCGC---11B.1.10.000018
ORF1ab/nsp4186R186LcGccTc11B.1.1.10.000327
ORF1ab/nsp4186R186RcgCcgT11B.1.1.1130.006993
ORF1ab/nsp4186R186HcGccAc11B.1.1.1590.004673
ORF1ab/nsp4186R186RcgCcgT11B.1.1.1980.001468
ORF1ab/nsp4186R186RcgCcgT11B.1.1.2220.000204
ORF1ab/nsp4186R186del2CGc--c11B.1.1.2320.001815
ORF1ab/nsp4186R186SCgcAgc11B.1.1.2360.006897
ORF1ab/nsp4186R186CCgcTgc11B.1.1.2630.001558
ORF1ab/nsp4186R186HcGccAc11B.1.1.280.000311
ORF1ab/nsp4186R186CCgcTgc11B.1.1.2890.002083
ORF1ab/nsp4186R186RcgCcgT11B.1.1.3060.000438
ORF1ab/nsp4186R186delCGC---11B.1.1.3060.000438
ORF1ab/nsp4186R186GCgcGgc11B.1.1.3690.000446
ORF1ab/nsp4186R186RcgCcgT11B.1.1.370.000193
ORF1ab/nsp4186R186CCgcTgc11B.1.1.390.00051
ORF1ab/nsp4186R186delCGC---11B.1.1.4090.002833
ORF1ab/nsp4186R186RcgCcgT11B.1.1.4340.000349
ORF1ab/nsp4186R186RcgCcgT11B.1.1.540.003021
ORF1ab/nsp4186R186SCgcAgc11B.1.1.70.000001
ORF1ab/nsp4186R186del1cGcc-c11B.1.1.70.000001
ORF1ab/nsp4186R186RcgCcgT11B.1.1390.000733
ORF1ab/nsp4186R186HcGccAc11B.1.1470.000756
ORF1ab/nsp4186R186HcGccAc11B.1.1600.000031
ORF1ab/nsp4186R186RcgCcgT11B.1.160.320.004292
ORF1ab/nsp4186R186RcgCcgT11B.1.1640.014925
ORF1ab/nsp4186R186GCgcGgc11B.1.1770.000013
ORF1ab/nsp4186R186CCgcTgc11B.1.177.100.000878
ORF1ab/nsp4186R186CCgcTgc11B.1.177.330.001645
ORF1ab/nsp4186R186HcGccAc11B.1.177.330.001645
ORF1ab/nsp4186R186CCgcTgc11B.1.177.40.000211
ORF1ab/nsp4186R186delCGC---11B.1.177.480.003125
ORF1ab/nsp4186R186CCgcTgc11B.1.177.570.000281
ORF1ab/nsp4186R186delCGC---11B.1.177.630.002703
ORF1ab/nsp4186R186CCgcTgc11B.1.177.820.000477
ORF1ab/nsp4186R186PcGccCc11B.1.177.830.001481
ORF1ab/nsp4186R186delCGC---11B.1.20.000009
ORF1ab/nsp4186R186del1cgCcg-11B.1.20.000009
ORF1ab/nsp4186R186GCgcGgc11B.1.20.000009
ORF1ab/nsp4186R186RcgCcgT11B.1.2210.000071
ORF1ab/nsp4186R186CCgcTgc11B.1.2340.000132
ORF1ab/nsp4186R186CCgcTgc11B.1.2360.002053
ORF1ab/nsp4186R186PcGccCc11B.1.2360.002053
ORF1ab/nsp4186R186RcgCcgT11B.1.2370.004975
ORF1ab/nsp4186R186RcgCcgT11B.1.2390.001221
ORF1ab/nsp4186R186CCgcTgc11B.1.2410.000812
ORF1ab/nsp4186R186delCGC---11B.1.2420.018868
ORF1ab/nsp4186R186PcGccCc11B.1.2580.000067
ORF1ab/nsp4186R186HcGccAc11B.1.2580.000067
ORF1ab/nsp4186R186CCgcTgc11B.1.2580.000067
ORF1ab/nsp4186R186RcgCcgT11B.1.2790.000514
ORF1ab/nsp4186R186HcGccAc11B.1.3050.002151
ORF1ab/nsp4186R186HcGccAc11B.1.3110.000275
ORF1ab/nsp4186R186RcgCcgA11B.1.351.50.0006
ORF1ab/nsp4186R186delCGC---11B.1.36.170.000494
ORF1ab/nsp4186R186delCGC---11B.1.36.180.00042
ORF1ab/nsp4186R186RcgCcgT11B.1.36.70.004
ORF1ab/nsp4186R186RcgCcgT11B.1.3670.000792
ORF1ab/nsp4186R186delCGC---11B.1.3670.000792
ORF1ab/nsp4186R186CCgcTgc11B.1.3690.000285
ORF1ab/nsp4186R186CCgcTgc11B.1.3990.001934
ORF1ab/nsp4186R186HcGccAc11B.1.4030.003268
ORF1ab/nsp4186R186delCGC---11B.1.4150.014286
ORF1ab/nsp4186R186HcGccAc11B.1.4290.000024
ORF1ab/nsp4186R186RcgCcgG11B.1.4290.000024
ORF1ab/nsp4186R186HcGccAc11B.1.438.10.000107
ORF1ab/nsp4186R186CCgcTgc11B.1.438.10.000107
ORF1ab/nsp4186R186RcgCcgT11B.1.4700.001404
ORF1ab/nsp4186R186HcGccAc11B.1.4990.00105
ORF1ab/nsp4186R186CCgcTgc11B.1.5090.000866
ORF1ab/nsp4186R186CCgcTgc11B.1.5260.000024
ORF1ab/nsp4186R186CCgcTgc11B.1.5570.05
ORF1ab/nsp4186R186CCgcTgc11B.1.5640.000426
ORF1ab/nsp4186R186del1cgCcg-11B.1.5960.000087
ORF1ab/nsp4186R186del1Cgc-gc11B.1.6090.000479
ORF1ab/nsp4186R186CCgcTgc11B.1.6120.002653
ORF1ab/nsp4186R186RcgCcgT11B.1.617.10.000129
ORF1ab/nsp4186R186CCgcTgc11B.1.617.10.000129
ORF1ab/nsp4186R186delCGC---11B.1.617.20.000004
ORF1ab/nsp4186R186RcgCcgT11B.1.6210.000089
ORF1ab/nsp4186R186CCgcTgc11B.1.6210.000089
ORF1ab/nsp4186R186RcgCcgA11B.1.930.000934
ORF1ab/nsp4186R186delCGC---11B.150.017544
ORF1ab/nsp4186R186CCgcTgc11B.230.002924
ORF1ab/nsp4186R186HcGccAc11B.280.003279
ORF1ab/nsp4186R186CCgcTgc11B.40.002208
ORF1ab/nsp4186R186RcgCcgT11B.60.00091
ORF1ab/nsp4186R186VCGCGTG11C.350.000774
ORF1ab/nsp4186R186LcGccTc11C.37.10.002618
ORF1ab/nsp4186R186HcGccAc11D.20.000075
ORF1ab/nsp4186R186RcgCcgT11L.10.001905
ORF1ab/nsp4186R186LcGccTc11P.10.000016
ORF1ab/nsp4186R186CCgcTgc11P.1.100.000269
ORF1ab/nsp4186R186RcgCcgT11P.1.120.000484
ORF1ab/nsp4186R186RcgCcgT11P.1.150.000232
ORF1ab/nsp4186R186HcGccAc11P.1.70.000319
ORF1ab/nsp4186R186RcgCcgT11P.1.70.000319
ORF1ab/nsp4186R186RcgCcgA11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.