CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 173 & Codon = aTc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4173T173IT2936InonsynaCcaTc826482460.9978229071-9073

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4173T173IaCcaTc82468264All0.001577
ORF1ab/nsp4173T173IaCcaTc32813292B.1.1.3180.990042
ORF1ab/nsp4173T173IaCcaTc12001201AZ.20.985222
ORF1ab/nsp4173T173IaCcaTc11521152AZ.10.999133
ORF1ab/nsp4173T173IaCcaTc655655AZ.30.995441
ORF1ab/nsp4173T173IaCcaTc297297AZ.40.996644
ORF1ab/nsp4173T173IaCcaTc283283AZ.50.992982
ORF1ab/nsp4173T173IaCcaTc213213AY.40.000332
ORF1ab/nsp4173T173IaCcaTc115121AZ.2.10.934959
ORF1ab/nsp4173T173IaCcaTc119119AZ.61
ORF1ab/nsp4173T173IaCcaTc100100AY.440.000609
ORF1ab/nsp4173T173IaCcaTc9999AY.1110.018132
ORF1ab/nsp4173T173IaCcaTc7272B.1.1.100.080268
ORF1ab/nsp4173T173IaCcaTc6565AY.250.000391
ORF1ab/nsp4173T173IaCcaTc6262AY.1030.000385
ORF1ab/nsp4173T173IaCcaTc6262B.1.5250.007016
ORF1ab/nsp4173T173IaCcaTc4949B.1.617.20.000185
ORF1ab/nsp4173T173IaCcaTc4343B.1.1.390.021916
ORF1ab/nsp4173T173IaCcaTc3333B.1.1.70.00003
ORF1ab/nsp4173T173IaCcaTc2626B.10.000238
ORF1ab/nsp4173T173IaCcaTc2424AY.430.000106
ORF1ab/nsp4173T173IaCcaTc2121B.1.2430.001461
ORF1ab/nsp4173T173IaCcaTc1919AY.30.000189
ORF1ab/nsp4173T173IaCcaTc1515AY.50.00031
ORF1ab/nsp4173T173IaCcaTc1414B.1.10.000254
ORF1ab/nsp4173T173IaCcaTc1212AY.330.000801
ORF1ab/nsp4173T173IaCcaTc1010AY.290.000158
ORF1ab/nsp4173T173IaCcaTc1010AY.360.001482
ORF1ab/nsp4173T173IaCcaTc1010B.1.20.000088
ORF1ab/nsp4173T173IaCcaTc99AY.1020.000239
ORF1ab/nsp4173T173IaCcaTc99AY.850.003845
ORF1ab/nsp4173T173IaCcaTc88AY.4.50.00086
ORF1ab/nsp4173T173IaCcaTc77B.1.3110.001922
ORF1ab/nsp4173T173IaCcaTc66AY.1190.000212
ORF1ab/nsp4173T173IaCcaTc66AY.200.000233
ORF1ab/nsp4173T173IaCcaTc66AY.390.000148
ORF1ab/nsp4173T173IaCcaTc66B0.000767
ORF1ab/nsp4173T173IaCcaTc55AY.1100.000563
ORF1ab/nsp4173T173IaCcaTc55AY.1200.000186
ORF1ab/nsp4173T173IaCcaTc55AY.39.10.000198
ORF1ab/nsp4173T173IaCcaTc44AY.1060.00134
ORF1ab/nsp4173T173IaCcaTc44AY.3.10.000341
ORF1ab/nsp4173T173IaCcaTc44AY.470.000124
ORF1ab/nsp4173T173IaCcaTc44B.1.1.3170.001647
ORF1ab/nsp4173T173IaCcaTc33AT.10.015385
ORF1ab/nsp4173T173IaCcaTc33AY.1000.000138
ORF1ab/nsp4173T173IaCcaTc33AY.340.000291
ORF1ab/nsp4173T173IaCcaTc33AY.4.40.001227
ORF1ab/nsp4173T173IaCcaTc33AY.690.00056
ORF1ab/nsp4173T173IaCcaTc33AY.980.000237
ORF1ab/nsp4173T173IaCcaTc33B.1.1770.00004
ORF1ab/nsp4173T173IaCcaTc33B.1.3690.000856
ORF1ab/nsp4173T173IaCcaTc220.111111
ORF1ab/nsp4173T173IaCcaTc22AY.230.000139
ORF1ab/nsp4173T173IaCcaTc22AY.260.000057
ORF1ab/nsp4173T173IaCcaTc22AY.4.20.000043
ORF1ab/nsp4173T173IaCcaTc22AY.420.00008
ORF1ab/nsp4173T173IaCcaTc22AY.860.00166
ORF1ab/nsp4173T173IaCcaTc22AY.9.10.000167
ORF1ab/nsp4173T173IaCcaTc22B.1.2580.000133
ORF1ab/nsp4173T173IaCcaTc22B.1.3510.000059
ORF1ab/nsp4173T173IaCcaTc22B.1.5750.000607
ORF1ab/nsp4173T173IaCcaTc22B.1.5760.001813
ORF1ab/nsp4173T173IaCcaTc22B.1.5960.000174
ORF1ab/nsp4173T173IaCcaTc22B.1.617.10.000258
ORF1ab/nsp4173T173IaCcaTc22B.1.6210.000177
ORF1ab/nsp4173T173IaCcaTc22D.20.00015
ORF1ab/nsp4173T173IaCcaTc22P.40.007605
ORF1ab/nsp4173T173IaCcaTc22Q.80.00033
ORF1ab/nsp4173T173IaCcaTc11AY.100.00053
ORF1ab/nsp4173T173IaCcaTc11AY.1010.00049
ORF1ab/nsp4173T173IaCcaTc11AY.1070.000466
ORF1ab/nsp4173T173IaCcaTc11AY.1090.00074
ORF1ab/nsp4173T173IaCcaTc11AY.1170.000085
ORF1ab/nsp4173T173IaCcaTc11AY.120.10.000321
ORF1ab/nsp4173T173IaCcaTc11AY.120.20.001285
ORF1ab/nsp4173T173IaCcaTc11AY.270.000065
ORF1ab/nsp4173T173IaCcaTc11AY.4.2.10.000149
ORF1ab/nsp4173T173IaCcaTc11AY.450.000122
ORF1ab/nsp4173T173IaCcaTc11AY.46.50.000198
ORF1ab/nsp4173T173IaCcaTc11AY.480.000465
ORF1ab/nsp4173T173IaCcaTc11AY.5.30.000337
ORF1ab/nsp4173T173IaCcaTc11AY.650.000533
ORF1ab/nsp4173T173IaCcaTc11AY.790.001211
ORF1ab/nsp4173T173IaCcaTc11AY.820.001357
ORF1ab/nsp4173T173IaCcaTc11AY.840.000437
ORF1ab/nsp4173T173IaCcaTc11AY.9.20.000037
ORF1ab/nsp4173T173IaCcaTc11AY.940.000443
ORF1ab/nsp4173T173IaCcaTc11AY.98.10.000048
ORF1ab/nsp4173T173IaCcaTc11B.1.1.2220.000204
ORF1ab/nsp4173T173IaCcaTc11B.1.1.280.000311
ORF1ab/nsp4173T173IaCcaTc11B.1.1.2840.000107
ORF1ab/nsp4173T173IaCcaTc11B.1.1.3060.000438
ORF1ab/nsp4173T173IaCcaTc11B.1.1.370.000193
ORF1ab/nsp4173T173IaCcaTc11B.1.177.690.001484
ORF1ab/nsp4173T173IaCcaTc11B.1.177.80.000752
ORF1ab/nsp4173T173IaCcaTc11B.1.360.000146
ORF1ab/nsp4173T173IaCcaTc11B.1.4080.00369
ORF1ab/nsp4173T173IaCcaTc11B.1.438.10.000107
ORF1ab/nsp4173T173IaCcaTc11B.1.466.20.000391
ORF1ab/nsp4173T173IaCcaTc11B.1.4700.001404
ORF1ab/nsp4173T173IaCcaTc11B.1.5260.000024
ORF1ab/nsp4173T173IaCcaTc11B.1.5880.00091
ORF1ab/nsp4173T173IaCcaTc11B.1.6250.002353
ORF1ab/nsp4173T173IaCcaTc11B.1.6280.000352
ORF1ab/nsp4173T173IaCcaTc11L.30.003546
ORF1ab/nsp4173T173IaCcaTc11P.1.170.000162
ORF1ab/nsp4173T173IaCcaTc11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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