CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 172

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4172D172DD2935DsyngaTgaC2243224319068-9070
ORF1ab/nsp4172D172delD2935deldelGAT---686819068-9070
ORF1ab/nsp4172D172YD2935YnonsynGatTat16140.8759068-9070
ORF1ab/nsp4172D172YD2935YnonsynGaTTaC1620.1259068-9070
ORF1ab/nsp4172D172HD2935HnonsynGatCat1080.89068-9070
ORF1ab/nsp4172D172HD2935HnonsynGaTCaC1020.29068-9070
ORF1ab/nsp4172D172VD2935VnonsyngAtgTt9919068-9070
ORF1ab/nsp4172D172GD2935GnonsyngAtgGt7719068-9070
ORF1ab/nsp4172D172ND2935NnonsynGatAat7719068-9070
ORF1ab/nsp4172D172ED2935EnonsyngaTgaG3319068-9070
ORF1ab/nsp4172D172del1D2935del1delGat-at2219068-9070
ORF1ab/nsp4172D172AD2935AnonsyngAtgCt2219068-9070
ORF1ab/nsp4172D172KD2935KnonsynGaTAaA210.59068-9070
ORF1ab/nsp4172D172KD2935KnonsynGaTAaG210.59068-9070
ORF1ab/nsp4172D172del2D2935del2delgATg--1119068-9070

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4172D172DgaTgaC22432243All0.000429
ORF1ab/nsp4172D172DgaTgaC634634AY.40.000987
ORF1ab/nsp4172D172DgaTgaC178178AT.10.912821
ORF1ab/nsp4172D172DgaTgaC174174AY.1110.031868
ORF1ab/nsp4172D172DgaTgaC161161B.1.1.70.000144
ORF1ab/nsp4172D172DgaTgaC145145B.1.1.5190.005758
ORF1ab/nsp4172D172DgaTgaC138138AY.30.001373
ORF1ab/nsp4172D172DgaTgaC7777B.1.617.20.00029
ORF1ab/nsp4172D172DgaTgaC6969AY.430.000306
ORF1ab/nsp4172D172delGAT---6868All0.000013
ORF1ab/nsp4172D172DgaTgaC5656AY.440.000341
ORF1ab/nsp4172D172DgaTgaC4747B.1.3230.979167
ORF1ab/nsp4172D172DgaTgaC4545P.1.140.002151
ORF1ab/nsp4172D172DgaTgaC4343B.1.258.170.004471
ORF1ab/nsp4172D172DgaTgaC4242AY.1030.000261
ORF1ab/nsp4172D172DgaTgaC2929B.1.20.000255
ORF1ab/nsp4172D172delGAT---2828B.1.1.70.000025
ORF1ab/nsp4172D172DgaTgaC2828B.1.4290.000659
ORF1ab/nsp4172D172DgaTgaC2222AY.1210.002977
ORF1ab/nsp4172D172DgaTgaC1717AY.250.000102
ORF1ab/nsp4172D172YGatTat1416All0.000003
ORF1ab/nsp4172D172YGaTTaC216All0
ORF1ab/nsp4172D172DgaTgaC1616AY.390.000395
ORF1ab/nsp4172D172DgaTgaC1616B.1.4080.059041
ORF1ab/nsp4172D172DgaTgaC1313B.10.000119
ORF1ab/nsp4172D172DgaTgaC1212AY.50.000248
ORF1ab/nsp4172D172DgaTgaC1212P.1.160.004489
ORF1ab/nsp4172D172DgaTgaC1111B.1.10.0002
ORF1ab/nsp4172D172DgaTgaC1111B.1.1.3720.007576
ORF1ab/nsp4172D172DgaTgaC1111P.10.000173
ORF1ab/nsp4172D172HGatCat810All0.000002
ORF1ab/nsp4172D172HGaTCaC210All0
ORF1ab/nsp4172D172DgaTgaC1010B.1.1770.000132
ORF1ab/nsp4172D172DgaTgaC1010B.1.621.10.005058
ORF1ab/nsp4172D172VgAtgTt99All0.000002
ORF1ab/nsp4172D172DgaTgaC99B.1.5510.011613
ORF1ab/nsp4172D172DgaTgaC99Q.40.004093
ORF1ab/nsp4172D172NGatAat77All0.000001
ORF1ab/nsp4172D172GgAtgGt77All0.000001
ORF1ab/nsp4172D172delGAT---77AY.430.000031
ORF1ab/nsp4172D172DgaTgaC66AY.1200.000223
ORF1ab/nsp4172D172DgaTgaC66AY.230.000418
ORF1ab/nsp4172D172DgaTgaC66AY.550.005505
ORF1ab/nsp4172D172DgaTgaC66B.1.6210.000531
ORF1ab/nsp4172D172HGatCat350.166667
ORF1ab/nsp4172D172HGaTCaC250.111111
ORF1ab/nsp4172D172DgaTgaC55AY.290.000079
ORF1ab/nsp4172D172DgaTgaC55AY.450.000608
ORF1ab/nsp4172D172DgaTgaC440.222222
ORF1ab/nsp4172D172YGatTat240.111111
ORF1ab/nsp4172D172YGaTTaC240.111111
ORF1ab/nsp4172D172DgaTgaC44AY.1160.001147
ORF1ab/nsp4172D172DgaTgaC44AY.4.20.000087
ORF1ab/nsp4172D172DgaTgaC44AY.700.000834
ORF1ab/nsp4172D172DgaTgaC44B.1.36.10.004561
ORF1ab/nsp4172D172YGatTat44B.1.617.20.000015
ORF1ab/nsp4172D172EgaTgaG33All0.000001
ORF1ab/nsp4172D172DgaTgaC33AY.1020.00008
ORF1ab/nsp4172D172DgaTgaC33AY.1170.000254
ORF1ab/nsp4172D172DgaTgaC33AY.260.000085
ORF1ab/nsp4172D172DgaTgaC33AY.39.10.000119
ORF1ab/nsp4172D172delGAT---33AY.4.50.000322
ORF1ab/nsp4172D172DgaTgaC33AY.470.000093
ORF1ab/nsp4172D172DgaTgaC33AY.60.000123
ORF1ab/nsp4172D172YGatTat33B.1.20.000026
ORF1ab/nsp4172D172DgaTgaC33B.1.2430.000209
ORF1ab/nsp4172D172DgaTgaC33B.1.3510.000089
ORF1ab/nsp4172D172DgaTgaC33B.1.466.20.001174
ORF1ab/nsp4172D172DgaTgaC33B.1.619.10.001924
ORF1ab/nsp4172D172NGatAat220.111111
ORF1ab/nsp4172D172AgAtgCt22All0
ORF1ab/nsp4172D172del1Gat-at22All0
ORF1ab/nsp4172D172KGaTAaA12All0
ORF1ab/nsp4172D172KGaTAaG12All0
ORF1ab/nsp4172D172DgaTgaC22AY.1000.000092
ORF1ab/nsp4172D172DgaTgaC22AY.1190.000071
ORF1ab/nsp4172D172DgaTgaC22AY.120.10.000642
ORF1ab/nsp4172D172DgaTgaC22AY.120.2.10.000997
ORF1ab/nsp4172D172DgaTgaC22AY.130.000322
ORF1ab/nsp4172D172DgaTgaC22AY.200.000078
ORF1ab/nsp4172D172DgaTgaC22AY.270.000129
ORF1ab/nsp4172D172GgAtgGt22AY.40.000003
ORF1ab/nsp4172D172DgaTgaC22AY.4.50.000215
ORF1ab/nsp4172D172DgaTgaC22AY.420.00008
ORF1ab/nsp4172D172delGAT---22AY.440.000012
ORF1ab/nsp4172D172DgaTgaC22AY.460.000208
ORF1ab/nsp4172D172DgaTgaC22AY.530.000575
ORF1ab/nsp4172D172DgaTgaC22AY.580.001815
ORF1ab/nsp4172D172DgaTgaC22AY.610.00021
ORF1ab/nsp4172D172DgaTgaC22AY.670.000929
ORF1ab/nsp4172D172DgaTgaC22AY.800.002257
ORF1ab/nsp4172D172DgaTgaC22AY.980.000158
ORF1ab/nsp4172D172DgaTgaC22AY.98.10.000097
ORF1ab/nsp4172D172DgaTgaC22AY.99.20.000184
ORF1ab/nsp4172D172delGAT---22B.10.000018
ORF1ab/nsp4172D172YGatTat22B.10.000018
ORF1ab/nsp4172D172delGAT---22B.1.10.000036
ORF1ab/nsp4172D172KGaTAaG12B.1.10.000018
ORF1ab/nsp4172D172KGaTAaA12B.1.10.000018
ORF1ab/nsp4172D172DgaTgaC22B.1.1.1590.009346
ORF1ab/nsp4172D172DgaTgaC22B.1.1.2140.000111
ORF1ab/nsp4172D172DgaTgaC22B.1.1.3260.003521
ORF1ab/nsp4172D172DgaTgaC22B.1.1.3480.001592
ORF1ab/nsp4172D172DgaTgaC22B.1.1.370.000386
ORF1ab/nsp4172D172DgaTgaC22B.1.1.630.000772
ORF1ab/nsp4172D172VgAtgTt22B.1.1.70.000002
ORF1ab/nsp4172D172DgaTgaC22B.1.1600.000062
ORF1ab/nsp4172D172delGAT---22B.1.1770.000026
ORF1ab/nsp4172D172delGAT---22B.1.177.180.00232
ORF1ab/nsp4172D172delGAT---22B.1.20.000018
ORF1ab/nsp4172D172DgaTgaC22B.1.36.100.009569
ORF1ab/nsp4172D172VgAtgTt22B.1.3620.003082
ORF1ab/nsp4172D172DgaTgaC22B.1.617.10.000258
ORF1ab/nsp4172D172delGAT---22B.1.617.20.000008
ORF1ab/nsp4172D172DgaTgaC22C.370.000232
ORF1ab/nsp4172D172HGatCat22D.20.00015
ORF1ab/nsp4172D172DgaTgaC22P.1.170.000324
ORF1ab/nsp4172D172DgaTgaC22P.1.60.003891
ORF1ab/nsp4172D172DgaTgaC22Q.30.00029
ORF1ab/nsp4172D172DgaTgaC11A0.000387
ORF1ab/nsp4172D172YGatTat11A.2.20.001689
ORF1ab/nsp4172D172DgaTgaC11A.23.10.000704
ORF1ab/nsp4172D172del2gATg--11All0
ORF1ab/nsp4172D172DgaTgaC11AU.20.002421
ORF1ab/nsp4172D172DgaTgaC11AY.1060.000335
ORF1ab/nsp4172D172DgaTgaC11AY.1070.000466
ORF1ab/nsp4172D172DgaTgaC11AY.1080.001103
ORF1ab/nsp4172D172DgaTgaC11AY.1130.000142
ORF1ab/nsp4172D172DgaTgaC11AY.1180.000063
ORF1ab/nsp4172D172AgAtgCt11AY.1190.000035
ORF1ab/nsp4172D172DgaTgaC11AY.120.000316
ORF1ab/nsp4172D172delGAT---11AY.1200.000037
ORF1ab/nsp4172D172DgaTgaC11AY.170.008197
ORF1ab/nsp4172D172DgaTgaC11AY.210.001898
ORF1ab/nsp4172D172delGAT---11AY.250.000006
ORF1ab/nsp4172D172GgAtgGt11AY.30.00001
ORF1ab/nsp4172D172AgAtgCt11AY.30.00001
ORF1ab/nsp4172D172DgaTgaC11AY.300.000396
ORF1ab/nsp4172D172DgaTgaC11AY.360.000148
ORF1ab/nsp4172D172EgaTgaG11AY.40.000002
ORF1ab/nsp4172D172VgAtgTt11AY.40.000002
ORF1ab/nsp4172D172NGatAat11AY.4.20.000022
ORF1ab/nsp4172D172NGatAat11AY.430.000004
ORF1ab/nsp4172D172EgaTgaG11AY.440.000006
ORF1ab/nsp4172D172GgAtgGt11AY.440.000006
ORF1ab/nsp4172D172delGAT---11AY.46.50.000198
ORF1ab/nsp4172D172DgaTgaC11AY.46.50.000198
ORF1ab/nsp4172D172DgaTgaC11AY.7.20.000559
ORF1ab/nsp4172D172delGAT---11AY.720.001361
ORF1ab/nsp4172D172DgaTgaC11AY.750.000056
ORF1ab/nsp4172D172DgaTgaC11AY.75.10.00018
ORF1ab/nsp4172D172DgaTgaC11AY.880.000884
ORF1ab/nsp4172D172delGAT---11AY.90.000068
ORF1ab/nsp4172D172DgaTgaC11AY.9.20.000037
ORF1ab/nsp4172D172DgaTgaC11AY.930.000273
ORF1ab/nsp4172D172delGAT---11AY.950.000761
ORF1ab/nsp4172D172delGAT---11B0.000128
ORF1ab/nsp4172D172DgaTgaC11B0.000128
ORF1ab/nsp4172D172del1Gat-at11B.10.000009
ORF1ab/nsp4172D172NGatAat11B.10.000009
ORF1ab/nsp4172D172NGatAat11B.1.10.000018
ORF1ab/nsp4172D172VgAtgTt11B.1.10.000018
ORF1ab/nsp4172D172del1Gat-at11B.1.10.000018
ORF1ab/nsp4172D172DgaTgaC11B.1.1.1530.001095
ORF1ab/nsp4172D172YGatTat11B.1.1.1680.026316
ORF1ab/nsp4172D172DgaTgaC11B.1.1.1980.001468
ORF1ab/nsp4172D172DgaTgaC11B.1.1.2550.00303
ORF1ab/nsp4172D172DgaTgaC11B.1.1.280.000311
ORF1ab/nsp4172D172delGAT---11B.1.1.280.000311
ORF1ab/nsp4172D172DgaTgaC11B.1.1.3540.004386
ORF1ab/nsp4172D172DgaTgaC11B.1.1.3680.003086
ORF1ab/nsp4172D172DgaTgaC11B.1.1.3700.012658
ORF1ab/nsp4172D172DgaTgaC11B.1.1.390.00051
ORF1ab/nsp4172D172DgaTgaC11B.1.1.3970.002252
ORF1ab/nsp4172D172DgaTgaC11B.1.1.4340.000349
ORF1ab/nsp4172D172DgaTgaC11B.1.1.5210.005348
ORF1ab/nsp4172D172del2gATg--11B.1.1.70.000001
ORF1ab/nsp4172D172DgaTgaC11B.1.1.980.018519
ORF1ab/nsp4172D172NGatAat11B.1.1130.015625
ORF1ab/nsp4172D172HGatCat11B.1.1470.000756
ORF1ab/nsp4172D172DgaTgaC11B.1.1570.002985
ORF1ab/nsp4172D172VgAtgTt11B.1.177.200.001517
ORF1ab/nsp4172D172delGAT---11B.1.177.40.000211
ORF1ab/nsp4172D172delGAT---11B.1.177.480.003125
ORF1ab/nsp4172D172DgaTgaC11B.1.177.50.001242
ORF1ab/nsp4172D172delGAT---11B.1.177.630.002703
ORF1ab/nsp4172D172delGAT---11B.1.177.870.000728
ORF1ab/nsp4172D172DgaTgaC11B.1.1820.007246
ORF1ab/nsp4172D172HGatCat11B.1.2210.000071
ORF1ab/nsp4172D172delGAT---11B.1.2420.018868
ORF1ab/nsp4172D172DgaTgaC11B.1.2580.000067
ORF1ab/nsp4172D172DgaTgaC11B.1.2640.012346
ORF1ab/nsp4172D172DgaTgaC11B.1.2810.021739
ORF1ab/nsp4172D172DgaTgaC11B.1.3330.010526
ORF1ab/nsp4172D172YGatTat11B.1.351.50.0006
ORF1ab/nsp4172D172DgaTgaC11B.1.360.000146
ORF1ab/nsp4172D172delGAT---11B.1.36.180.00042
ORF1ab/nsp4172D172delGAT---11B.1.36.380.001642
ORF1ab/nsp4172D172GgAtgGt11B.1.4000.000429
ORF1ab/nsp4172D172GgAtgGt11B.1.4150.014286
ORF1ab/nsp4172D172DgaTgaC11B.1.4220.000812
ORF1ab/nsp4172D172DgaTgaC11B.1.5240.001406
ORF1ab/nsp4172D172VgAtgTt11B.1.5250.000113
ORF1ab/nsp4172D172EgaTgaG11B.1.5250.000113
ORF1ab/nsp4172D172HGatCat11B.1.5260.000024
ORF1ab/nsp4172D172DgaTgaC11B.1.5860.010989
ORF1ab/nsp4172D172DgaTgaC11B.1.5950.000261
ORF1ab/nsp4172D172VgAtgTt11B.1.617.20.000004
ORF1ab/nsp4172D172GgAtgGt11B.1.617.20.000004
ORF1ab/nsp4172D172DgaTgaC11B.1.6190.000871
ORF1ab/nsp4172D172delGAT---11B.150.017544
ORF1ab/nsp4172D172DgaTgaC11C.350.000774
ORF1ab/nsp4172D172DgaTgaC11D.20.000075
ORF1ab/nsp4172D172DgaTgaC11P.1.100.000269
ORF1ab/nsp4172D172DgaTgaC11P.1.150.000232
ORF1ab/nsp4172D172DgaTgaC11P.1.70.000319
ORF1ab/nsp4172D172DgaTgaC11R.10.00009