CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 17 | F17L | F2780L | nonsyn | Ttc | Ctc | 45068 | 44980 | 0.998047 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17L | F2780L | nonsyn | TtC | CtT | 45068 | 44 | 0.000976302 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17L | F2780L | nonsyn | ttC | ttA | 45068 | 39 | 0.000865359 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17L | F2780L | nonsyn | ttC | ttG | 45068 | 4 | 0.0000887548 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17L | F2780L | nonsyn | TtC | CtA | 45068 | 1 | 0.0000221887 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17S | F2780S | nonsyn | tTc | tCc | 2892 | 2885 | 0.99758 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17S | F2780S | nonsyn | TTc | AGc | 2892 | 5 | 0.00172891 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17S | F2780S | nonsyn | tTC | tCT | 2892 | 1 | 0.000345781 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17S | F2780S | nonsyn | TTC | AGT | 2892 | 1 | 0.000345781 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17F | F2780F | syn | ttC | ttT | 1954 | 1954 | 1 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17del | F2780del | del | TTC | --- | 173 | 173 | 1 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17I | F2780I | nonsyn | Ttc | Atc | 39 | 31 | 0.794872 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17I | F2780I | nonsyn | TtC | AtA | 39 | 5 | 0.128205 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17I | F2780I | nonsyn | TtC | AtT | 39 | 3 | 0.0769231 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17C | F2780C | nonsyn | tTc | tGc | 22 | 21 | 0.954545 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17C | F2780C | nonsyn | tTC | tGT | 22 | 1 | 0.0454545 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17Y | F2780Y | nonsyn | tTc | tAc | 12 | 10 | 0.833333 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17Y | F2780Y | nonsyn | tTC | tAT | 12 | 2 | 0.166667 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17V | F2780V | nonsyn | Ttc | Gtc | 11 | 8 | 0.727273 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17V | F2780V | nonsyn | TtC | GtT | 11 | 1 | 0.0909091 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17V | F2780V | nonsyn | TtC | GtA | 11 | 1 | 0.0909091 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17V | F2780V | nonsyn | TtC | GtG | 11 | 1 | 0.0909091 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17N | F2780N | nonsyn | TTC | AAT | 4 | 2 | 0.5 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17N | F2780N | nonsyn | TTc | AAc | 4 | 2 | 0.5 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17del1 | F2780del1 | del | TtC | -tN | 3 | 1 | 0.333333 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17del1 | F2780del1 | del | Ttc | -tc | 3 | 1 | 0.333333 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17del1 | F2780del1 | del | ttC | tt- | 3 | 1 | 0.333333 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17del2 | F2780del2 | del | TTC | --N | 2 | 1 | 0.5 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17del2 | F2780del2 | del | TTc | --c | 2 | 1 | 0.5 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17T | F2780T | nonsyn | TTC | ACA | 2 | 1 | 0.5 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17T | F2780T | nonsyn | TTC | ACT | 2 | 1 | 0.5 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17D | F2780D | nonsyn | TTc | GAc | 2 | 1 | 0.5 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17D | F2780D | nonsyn | TTC | GAT | 2 | 1 | 0.5 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17K | F2780K | nonsyn | TTC | AAA | 1 | 1 | 1 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17E | F2780E | nonsyn | TTC | GAA | 1 | 1 | 1 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17P | F2780P | nonsyn | TTc | CCc | 1 | 1 | 1 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17H | F2780H | nonsyn | TTc | CAc | 1 | 1 | 1 | 8603-8605 |
ORF1ab/nsp4 | 17 | F17X | F2780X | nonsyn | tTC | tAA | 1 | 1 | 1 | 8603-8605 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 44980 | 45068 | All | 0.008603 |
ORF1ab/nsp4 | 17 | F17L | TtC | CtT | 44 | 45068 | All | 0.000008 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 39 | 45068 | All | 0.000007 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttG | 4 | 45068 | All | 0.000001 |
ORF1ab/nsp4 | 17 | F17L | TtC | CtA | 1 | 45068 | All | 0 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 44259 | 44299 | B.1.1.7 | 0.039622 |
ORF1ab/nsp4 | 17 | F17L | TtC | CtT | 39 | 44299 | B.1.1.7 | 0.000035 |
ORF1ab/nsp4 | 17 | F17L | TtC | CtA | 1 | 44299 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 2885 | 2892 | All | 0.000552 |
ORF1ab/nsp4 | 17 | F17S | TTc | AGc | 5 | 2892 | All | 0.000001 |
ORF1ab/nsp4 | 17 | F17S | TTC | AGT | 1 | 2892 | All | 0 |
ORF1ab/nsp4 | 17 | F17S | tTC | tCT | 1 | 2892 | All | 0 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 2614 | 2615 | AY.4 | 0.004068 |
ORF1ab/nsp4 | 17 | F17S | tTC | tCT | 1 | 2615 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1954 | 1954 | All | 0.000374 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 404 | 404 | B.1.1.7 | 0.000362 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 392 | 397 | Q.8 | 0.064644 |
ORF1ab/nsp4 | 17 | F17L | TtC | CtT | 5 | 397 | Q.8 | 0.000825 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 259 | 259 | B.1.617.2 | 0.000975 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 182 | 182 | A.29 | 0.968085 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 173 | 173 | All | 0.000033 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 138 | 138 | AY.4 | 0.000215 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 92 | 92 | B.1.1.7 | 0.000082 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 88 | 88 | B.1.36.2 | 0.946237 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 86 | 86 | AY.35 | 0.020042 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 78 | 83 | AY.44 | 0.000475 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 5 | 83 | AY.44 | 0.00003 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 75 | 75 | B.1.2 | 0.00066 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 63 | 63 | B.1.1.7 | 0.000056 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 62 | 62 | B.1.160 | 0.001934 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 47 | 48 | B.1.1 | 0.000853 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 48 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 47 | 47 | B.1.298 | 0.099366 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 38 | 43 | B.1 | 0.000348 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 3 | 43 | B.1 | 0.000027 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttG | 2 | 43 | B.1 | 0.000018 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 31 | 39 | All | 0.000006 |
ORF1ab/nsp4 | 17 | F17I | TtC | AtA | 5 | 39 | All | 0.000001 |
ORF1ab/nsp4 | 17 | F17I | TtC | AtT | 3 | 39 | All | 0.000001 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 38 | 38 | P.1 | 0.000599 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 35 | 35 | AY.9.1 | 0.00293 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 34 | 34 | AY.44 | 0.000207 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 32 | 32 | AY.43 | 0.000142 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 30 | 30 | AY.103 | 0.000186 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 29 | 29 | B.1.1.519 | 0.001152 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 26 | 28 | AY.43 | 0.000115 |
ORF1ab/nsp4 | 17 | F17S | TTc | AGc | 2 | 28 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 26 | 26 | B.1.617.2 | 0.000098 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 21 | 22 | All | 0.000004 |
ORF1ab/nsp4 | 17 | F17C | tTC | tGT | 1 | 22 | All | 0 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 22 | 22 | AY.5 | 0.000454 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 22 | 22 | AY.9.2 | 0.000808 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 21 | 21 | AY.99.2 | 0.001935 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 20 | 20 | AY.101 | 0.009809 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 20 | 20 | AY.36 | 0.002964 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 20 | 20 | AY.46 | 0.002082 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 20 | 20 | B.1.1 | 0.000363 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 19 | 19 | AY.25 | 0.000114 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 17 | 17 | B.1 | 0.000156 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 16 | 16 | AY.117 | 0.001352 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 14 | 14 | AY.42 | 0.000563 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 14 | 14 | B.1.1.523 | 0.021875 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 13 | 13 | AD.2 | 0.002847 |
ORF1ab/nsp4 | 17 | F17Y | tTc | tAc | 10 | 12 | All | 0.000002 |
ORF1ab/nsp4 | 17 | F17Y | tTC | tAT | 2 | 12 | All | 0 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 12 | 12 | AY.16.1 | 0.005639 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 12 | 12 | B.1.1.420 | 0.012072 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp4 | 17 | F17V | Ttc | Gtc | 8 | 11 | All | 0.000002 |
ORF1ab/nsp4 | 17 | F17V | TtC | GtA | 1 | 11 | All | 0 |
ORF1ab/nsp4 | 17 | F17V | TtC | GtG | 1 | 11 | All | 0 |
ORF1ab/nsp4 | 17 | F17V | TtC | GtT | 1 | 11 | All | 0 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 7 | 11 | AY.4 | 0.000011 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 4 | 11 | AY.4 | 0.000006 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 7 | 11 | B.1.221 | 0.000497 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 4 | 11 | B.1.221 | 0.000284 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 11 | 11 | B.1.36.29 | 0.005691 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 11 | 11 | C.36 | 0.010018 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 10 | 10 | A | 0.00387 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 7 | 7 | B | 0.000895 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 2 | 5 | 0.111111 | |
ORF1ab/nsp4 | 17 | F17I | TtC | AtT | 2 | 5 | 0.111111 | |
ORF1ab/nsp4 | 17 | F17I | TtC | AtA | 1 | 5 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | AY.48 | 0.002326 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 5 | 5 | B.1.1.277 | 0.003794 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | B.1.362 | 0.007704 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 5 | 5 | B.1.595 | 0.001305 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 3 | 5 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 2 | 5 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | 0.222222 | |
ORF1ab/nsp4 | 17 | F17Y | tTC | tAT | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 17 | F17Y | tTc | tAc | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 17 | F17N | TTC | AAT | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 17 | F17N | TTc | AAc | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 17 | F17N | TTC | AAT | 2 | 4 | All | 0 |
ORF1ab/nsp4 | 17 | F17N | TTc | AAc | 2 | 4 | All | 0 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | AY.5.4 | 0.001107 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 4 | 4 | B.1.1.157 | 0.003653 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 4 | 4 | B.1.621 | 0.000354 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 4 | 4 | Q.5 | 0.067797 |
ORF1ab/nsp4 | 17 | F17V | TtC | GtT | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17V | TtC | GtA | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17V | Ttc | Gtc | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17del1 | TtC | -tN | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 17 | F17del1 | ttC | tt- | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 17 | F17del1 | Ttc | -tc | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 2 | 3 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 3 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp4 | 17 | F17V | Ttc | Gtc | 2 | 3 | B.1 | 0.000018 |
ORF1ab/nsp4 | 17 | F17V | TtC | GtG | 1 | 3 | B.1 | 0.000009 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | B.1.160.28 | 0.008772 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp4 | 17 | F17Y | tTc | tAc | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 3 | 3 | Q.6 | 0.019868 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 17 | F17S | TTc | AGc | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17D | TTc | GAc | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17C | tTC | tGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17S | TTC | AGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17D | TTC | GAT | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17del2 | TTc | --c | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 17 | F17D | TTc | GAc | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 17 | F17del2 | TTC | --N | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 17 | F17D | TTC | GAT | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 17 | F17T | TTC | ACT | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 17 | F17T | TTC | ACA | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttG | 1 | 2 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 17 | F17I | TtC | AtT | 1 | 2 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | B.1.346 | 0.002621 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | B.1.468 | 0.011429 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | B.1.623 | 0.001073 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp4 | 17 | F17I | TtC | AtA | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp4 | 17 | F17K | TTC | AAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17E | TTC | GAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17X | tTC | tAA | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 17 | F17V | Ttc | Gtc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp4 | 17 | F17E | TTC | GAA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 17 | F17X | tTC | tAA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 17 | F17K | TTC | AAA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 17 | F17H | TTc | CAc | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 17 | F17P | TTc | CCc | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AS.1 | 0.009524 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp4 | 17 | F17Y | tTc | tAc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 17 | F17V | Ttc | Gtc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 17 | F17del1 | ttC | tt- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 17 | F17I | TtC | AtA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp4 | 17 | F17S | TTc | AGc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 17 | F17del1 | Ttc | -tc | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 17 | F17S | TTc | AGc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 17 | F17Y | tTc | tAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.115 | 0.008929 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.1.181 | 0.004545 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | B.1.1.48 | 0.002874 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 17 | F17Y | tTc | tAc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp4 | 17 | F17H | TTc | CAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 17 | F17V | Ttc | Gtc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 17 | F17P | TTc | CCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 17 | F17Y | tTc | tAc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 17 | F17T | TTC | ACT | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.113 | 0.015625 |
ORF1ab/nsp4 | 17 | F17V | Ttc | Gtc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp4 | 17 | F17Y | tTc | tAc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 17 | F17del1 | TtC | -tN | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 17 | F17I | TtC | AtA | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 17 | F17V | Ttc | Gtc | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 17 | F17S | tTc | tCc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 17 | F17del2 | TTc | --c | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 17 | F17I | Ttc | Atc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp4 | 17 | F17del2 | TTC | --N | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp4 | 17 | F17T | TTC | ACA | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 17 | F17L | ttC | ttG | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 17 | F17L | Ttc | Ctc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 17 | F17C | tTc | tGc | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp4 | 17 | F17F | ttC | ttT | 1 | 1 | Q.5 | 0.016949 |
ORF1ab/nsp4 | 17 | F17del | TTC | --- | 1 | 1 | U.3 | 0.003861 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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