CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 167 | V167L | V2930L | nonsyn | Gta | Tta | 2417590 | 2417358 | 0.999904 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167L | V2930L | nonsyn | GtA | TtG | 2417590 | 166 | 0.0000686634 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167L | V2930L | nonsyn | Gta | Cta | 2417590 | 66 | 0.0000272999 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167del | V2930del | del | GTA | --- | 80 | 80 | 1 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167V | V2930V | syn | gtA | gtG | 77 | 74 | 0.961039 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167V | V2930V | syn | gtA | gtT | 77 | 2 | 0.025974 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167V | V2930V | syn | gtA | gtC | 77 | 1 | 0.012987 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167I | V2930I | nonsyn | Gta | Ata | 26 | 25 | 0.961538 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167I | V2930I | nonsyn | GtA | AtT | 26 | 1 | 0.0384615 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167A | V2930A | nonsyn | gTa | gCa | 22 | 22 | 1 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167S | V2930S | nonsyn | GTa | TCa | 19 | 18 | 0.947368 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167S | V2930S | nonsyn | GTA | AGT | 19 | 1 | 0.0526316 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167F | V2930F | nonsyn | GtA | TtT | 11 | 11 | 1 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167del1 | V2930del1 | del | Gta | -ta | 4 | 4 | 1 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167E | V2930E | nonsyn | gTa | gAa | 4 | 4 | 1 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167R | V2930R | nonsyn | GTa | AGa | 3 | 3 | 1 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167G | V2930G | nonsyn | gTa | gGa | 3 | 2 | 0.666667 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167G | V2930G | nonsyn | gTA | gGT | 3 | 1 | 0.333333 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167X | V2930X | nonsyn | GTa | TAa | 2 | 2 | 1 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167T | V2930T | nonsyn | GTa | ACa | 1 | 1 | 1 | 9053-9055 |
ORF1ab/nsp4 | 167 | V167del2 | V2930del2 | del | GTa | --a | 1 | 1 | 1 | 9053-9055 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2417358 | 2417590 | All | 0.462348 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 166 | 2417590 | All | 0.000032 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 66 | 2417590 | All | 0.000013 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 642433 | 642437 | AY.4 | 0.999897 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 4 | 642437 | AY.4 | 0.000006 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 223019 | 223060 | B.1.617.2 | 0.839759 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 22 | 223060 | B.1.617.2 | 0.000083 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 19 | 223060 | B.1.617.2 | 0.000072 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 220722 | 220762 | AY.43 | 0.977901 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 34 | 220762 | AY.43 | 0.000151 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 6 | 220762 | AY.43 | 0.000027 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 165375 | 165381 | AY.25 | 0.994701 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 5 | 165381 | AY.25 | 0.00003 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 1 | 165381 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 161632 | 161635 | AY.44 | 0.983815 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 2 | 161635 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 1 | 161635 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 160000 | 160009 | AY.103 | 0.993449 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 6 | 160009 | AY.103 | 0.000037 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 3 | 160009 | AY.103 | 0.000019 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 100063 | 100068 | AY.3 | 0.995266 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 4 | 100068 | AY.3 | 0.00004 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 1 | 100068 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 63357 | 63377 | AY.29 | 0.999369 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 19 | 63377 | AY.29 | 0.0003 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 1 | 63377 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 48243 | 48243 | AY.5 | 0.99618 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 46054 | 46055 | AY.4.2 | 0.99885 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 1 | 46055 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 39572 | 39575 | AY.39 | 0.977883 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 3 | 39575 | AY.39 | 0.000074 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 37670 | 37694 | AY.102 | 0.99878 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 24 | 37694 | AY.102 | 0.000636 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 28186 | 28186 | AY.119 | 0.995198 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 26839 | 26840 | AY.120 | 0.997844 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 1 | 26840 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 25401 | 25455 | AY.20 | 0.987213 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 54 | 25455 | AY.20 | 0.002099 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 25112 | 25114 | AY.39.1 | 0.994771 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 2 | 25114 | AY.39.1 | 0.000079 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 24533 | 24535 | AY.42 | 0.986965 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 1 | 24535 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 1 | 24535 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 24287 | 24287 | AY.6 | 0.99889 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 21575 | 21576 | AY.100 | 0.992593 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 1 | 21576 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 20360 | 20360 | AY.98.1 | 0.986052 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 15889 | 15889 | AY.118 | 0.995427 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 14742 | 14742 | AY.33 | 0.984441 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 13966 | 13966 | AY.23 | 0.974123 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 13597 | 13597 | AY.46.6 | 0.981804 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 12348 | 12348 | AY.98 | 0.975432 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 11694 | 11694 | AY.3.1 | 0.997016 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 11538 | 11540 | AY.117 | 0.975152 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 2 | 11540 | AY.117 | 0.000169 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 10736 | 10737 | AY.99.2 | 0.989402 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 1 | 10737 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 10218 | 10218 | AY.34 | 0.990788 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 9304 | 9311 | AY.46 | 0.96836 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 7 | 9311 | AY.46 | 0.000729 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 8836 | 8836 | AY.7.1 | 0.99583 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 8510 | 8510 | AY.4.5 | 0.914759 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 8250 | 8250 | AY.110 | 0.929682 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 7975 | 7975 | AY.45 | 0.970431 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 7233 | 7233 | AY.121 | 0.978755 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 6884 | 6884 | AY.113 | 0.980208 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 6674 | 6674 | AY.4.2.1 | 0.994338 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 6660 | 6660 | AY.36 | 0.987105 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 6057 | 6057 | AY.46.4 | 0.996381 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 5449 | 5449 | AY.111 | 0.997985 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 5084 | 5084 | AY.7 | 0.996472 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 5038 | 5038 | AY.46.5 | 0.999603 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 4532 | 4532 | AY.29.1 | 0.999338 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 4296 | 4296 | AY.114 | 0.992836 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3617 | 3617 | AY.93 | 0.987712 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3494 | 3496 | AY.5.4 | 0.966796 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 2 | 3496 | AY.5.4 | 0.000553 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3327 | 3328 | AY.92 | 0.95576 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 1 | 3328 | AY.92 | 0.000287 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3267 | 3267 | AY.41 | 0.960317 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3195 | 3195 | AY.116.1 | 0.995017 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3127 | 3127 | AY.12 | 0.988306 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3104 | 3104 | AY.120.1 | 0.996469 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2923 | 2923 | AY.5.3 | 0.986167 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2906 | 2906 | AY.106 | 0.973208 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2503 | 2503 | AY.116 | 0.717809 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2498 | 2498 | AY.1 | 0.988524 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2403 | 2403 | AY.4.4 | 0.983224 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2396 | 2396 | AY.23.1 | 1 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2271 | 2271 | AY.85 | 0.970098 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2251 | 2251 | AY.94 | 0.996459 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2218 | 2218 | AY.84 | 0.970254 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2137 | 2137 | AY.107 | 0.995806 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2013 | 2013 | AY.101 | 0.987249 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2003 | 2003 | AY.120.2.1 | 0.998007 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1959 | 1959 | AY.34.1 | 0.99898 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1817 | 1817 | AY.32 | 0.967519 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1665 | 1665 | AY.7.2 | 0.931208 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1465 | 1465 | AY.105 | 0.942122 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1449 | 1450 | AY.46.2 | 0.920584 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 1 | 1450 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1380 | 1380 | AY.39.1.1 | 1 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1371 | 1371 | AY.90 | 0.938398 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1353 | 1353 | AY.4.1 | 0.997788 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1347 | 1347 | AY.91 | 0.98393 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1328 | 1328 | AY.109 | 0.982249 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1248 | 1248 | AY.95 | 0.949772 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1177 | 1177 | AY.87 | 0.980017 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1160 | 1160 | AY.86 | 0.962656 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1156 | 1156 | AY.4.3 | 0.973064 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1101 | 1102 | AY.88 | 0.973475 |
ORF1ab/nsp4 | 167 | V167L | GtA | TtG | 1 | 1102 | AY.88 | 0.000884 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1067 | 1067 | AY.46.3 | 0.996265 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 944 | 944 | AY.99 | 0.990556 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 921 | 921 | AY.47 | 0.028648 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 882 | 882 | AY.80 | 0.995485 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 842 | 842 | AY.46.1 | 0.864476 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 838 | 838 | AY.77 | 0.944758 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 826 | 826 | AY.75 | 0.046275 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 822 | 822 | AY.79 | 0.995157 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 758 | 758 | AY.108 | 0.835722 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 725 | 725 | AY.120.2 | 0.931877 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 709 | 709 | AY.82 | 0.962008 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 707 | 707 | AY.9.2 | 0.025968 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 663 | 663 | B.1 | 0.006073 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 649 | 649 | AY.39.2 | 1 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 623 | 623 | AY.99.1 | 0.967391 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 613 | 613 | AY.73 | 0.407851 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 583 | 583 | AY.97 | 0.991497 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 577 | 577 | AY.78 | 0.88906 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 575 | 575 | AY.83 | 0.991379 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 497 | 497 | AY.104 | 0.986111 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 487 | 487 | AY.81 | 0.97012 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 471 | 471 | AY.21 | 0.893738 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 471 | 471 | AY.22 | 0.985356 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 465 | 465 | AY.96 | 0.96473 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 449 | 449 | AY.55 | 0.411927 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 441 | 441 | AY.68 | 0.120723 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 402 | 402 | AY.5.2 | 0.990148 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 383 | 383 | AY.74 | 0.044293 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 315 | 315 | AY.54 | 0.030034 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 290 | 290 | AY.59 | 0.153602 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 281 | 281 | AY.19 | 0.32041 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 267 | 267 | AY.58 | 0.242287 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 266 | 266 | AY.5.1 | 1 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 239 | 239 | AY.91.1 | 0.971545 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 234 | 234 | AY.75.1 | 0.042193 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 223 | 223 | AY.53 | 0.064117 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 213 | 213 | B | 0.027224 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 203 | 203 | AY.89 | 0.995098 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 201 | 201 | AY.76 | 0.971014 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 200 | 200 | AY.38 | 0.09985 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 181 | 181 | AY.69 | 0.033788 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 172 | 172 | AY.115 | 0.895833 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 172 | 172 | AY.52 | 0.140065 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 167 | 167 | AY.64 | 0.099405 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 159 | 159 | AY.67 | 0.073816 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 147 | 147 | AY.37 | 0.04646 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 143 | 143 | AY.56 | 0.229535 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 135 | 135 | AY.10 | 0.071542 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 132 | 132 | AY.16 | 0.050114 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 127 | 127 | AY.63 | 0.04913 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 108 | 108 | AY.57 | 0.070866 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 107 | 107 | AY.40 | 0.103182 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 99 | 99 | AY.26 | 0.002803 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 99 | 99 | B.1.1.7 | 0.000089 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 98 | 98 | AY.13 | 0.015776 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 98 | 98 | AY.14 | 0.008625 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 93 | 93 | AY.70 | 0.019391 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 85 | 85 | AY.48 | 0.039535 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 81 | 81 | AY.35 | 0.018877 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 80 | 80 | All | 0.000015 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 74 | 77 | All | 0.000014 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtT | 2 | 77 | All | 0 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtC | 1 | 77 | All | 0 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 76 | 76 | AY.62 | 0.033115 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 73 | 73 | AY.30 | 0.028888 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 69 | 69 | AY.65 | 0.03678 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 63 | 63 | AY.60 | 0.059099 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 63 | 63 | AY.71 | 0.029929 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 59 | 60 | B.1.1.7 | 0.000053 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtT | 1 | 60 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 52 | 52 | AY.11 | 0.069612 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 43 | 43 | B.1.1 | 0.00078 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 39 | 39 | AY.50 | 0.031175 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 36 | 36 | AY.49 | 0.115016 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 35 | 35 | B.1.596 | 0.00305 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 34 | 34 | B.1.1.7 | 0.00003 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 31 | 31 | AY.24 | 0.013362 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 31 | 31 | AY.61 | 0.003248 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 30 | 30 | AY.16.1 | 0.014098 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 30 | 30 | AY.17 | 0.245902 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 25 | 26 | All | 0.000005 |
ORF1ab/nsp4 | 167 | V167I | GtA | AtT | 1 | 26 | All | 0 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 23 | 23 | AY.51 | 0.020909 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 23 | 23 | AY.9 | 0.001555 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 22 | 22 | All | 0.000004 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 20 | 20 | AY.28 | 0.037807 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 18 | 19 | All | 0.000003 |
ORF1ab/nsp4 | 167 | V167S | GTA | AGT | 1 | 19 | All | 0 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 18 | 18 | P.1 | 0.000284 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 17 | 17 | AY.9.1 | 0.001423 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 17 | 17 | B.1.617.1 | 0.002192 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 15 | 15 | AY.8 | 0.009091 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 14 | 14 | AY.66 | 0.014973 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 13 | 13 | B.1.1.526 | 0.046099 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 13 | 13 | B.1.623 | 0.006974 |
ORF1ab/nsp4 | 167 | V167F | GtA | TtT | 11 | 11 | All | 0.000002 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 10 | 10 | AY.72 | 0.013605 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 8 | 8 | A | 0.003096 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 8 | 8 | AY.27 | 0.000518 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 6 | 6 | B.1.375 | 0.004918 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 5 | 5 | B.1.214 | 0.018315 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 5 | 5 | P.1.1 | 0.001588 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 4 | 4 | 0.222222 | |
ORF1ab/nsp4 | 167 | V167E | gTa | gAa | 4 | 4 | All | 0.000001 |
ORF1ab/nsp4 | 167 | V167del1 | Gta | -ta | 4 | 4 | All | 0.000001 |
ORF1ab/nsp4 | 167 | V167F | GtA | TtT | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 4 | 4 | B.1.474 | 0.007605 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 2 | 3 | 0.111111 | |
ORF1ab/nsp4 | 167 | V167I | GtA | AtT | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 167 | V167R | GTa | AGa | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 167 | V167G | gTa | gGa | 2 | 3 | All | 0 |
ORF1ab/nsp4 | 167 | V167G | gTA | gGT | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3 | 3 | B.1.335 | 0.030928 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3 | 3 | B.1.576 | 0.00272 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3 | 3 | B.1.628 | 0.001057 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 2 | 3 | P.1 | 0.000032 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtC | 1 | 3 | P.1 | 0.000016 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp4 | 167 | V167E | gTa | gAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 167 | V167X | GTa | TAa | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 167 | V167G | gTa | gGa | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 167 | V167G | gTA | gGT | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | A.3 | 0.004193 |
ORF1ab/nsp4 | 167 | V167X | GTa | TAa | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 167 | V167del1 | Gta | -ta | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.1.53 | 0.027397 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp4 | 167 | V167L | Gta | Cta | 1 | 2 | B.1.378 | 0.006849 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 2 | B.1.378 | 0.006849 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.395 | 0.014085 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp4 | 167 | V167F | GtA | TtT | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 2 | 2 | B.1.629 | 0.026667 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp4 | 167 | V167S | GTA | AGT | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 167 | V167R | GTa | AGa | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 167 | V167V | gtA | gtT | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | AH.2 | 0.012048 |
ORF1ab/nsp4 | 167 | V167T | GTa | ACa | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 167 | V167del2 | GTa | --a | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 167 | V167F | GtA | TtT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 167 | V167F | GtA | TtT | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 167 | V167F | GtA | TtT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 167 | V167F | GtA | TtT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 167 | V167del1 | Gta | -ta | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp4 | 167 | V167F | GtA | TtT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 167 | V167R | GTa | AGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 167 | V167G | gTa | gGa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 167 | V167T | GTa | ACa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 167 | V167E | gTa | gAa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | B.1.1.377 | 0.001381 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 167 | V167E | gTa | gAa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 167 | V167del2 | GTa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.208 | 0.04 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.485 | 0.014925 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.604 | 0.017241 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 167 | V167del1 | Gta | -ta | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 167 | V167V | gtA | gtG | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 167 | V167S | GTa | TCa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp4 | 167 | V167A | gTa | gCa | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.1.94 | 0.027027 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp4 | 167 | V167del | GTA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp4 | 167 | V167R | GTa | AGa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 167 | V167I | Gta | Ata | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp4 | 167 | V167L | Gta | Tta | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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