CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 163 & Codon = tTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4163S163FS2926FnonsyntCttTt181118100.9994489041-9043

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4163S163FtCttTt18101811All0.000346
ORF1ab/nsp4163S163FtCttTt356356B.1.20.003135
ORF1ab/nsp4163S163FtCttTt195195B.1.1.70.000175
ORF1ab/nsp4163S163FtCttTt149149B.1.6321
ORF1ab/nsp4163S163FtCttTt100100AY.40.000156
ORF1ab/nsp4163S163FtCttTt8888B.1.2430.006123
ORF1ab/nsp4163S163FtCttTt6969B.1.243.21
ORF1ab/nsp4163S163FtCttTt5454AY.260.001529
ORF1ab/nsp4163S163FtCttTt4646AY.140.004049
ORF1ab/nsp4163S163FtCttTt4646B.1.4290.001082
ORF1ab/nsp4163S163FtCttTt4343AY.230.002999
ORF1ab/nsp4163S163FtCttTt4040B.1.617.20.000151
ORF1ab/nsp4163S163FtCttTt3838AY.1190.001342
ORF1ab/nsp4163S163FtCttTt3838AY.30.000378
ORF1ab/nsp4163S163FtCttTt3636B.1.258.170.003743
ORF1ab/nsp4163S163FtCttTt3434B.1.6210.00301
ORF1ab/nsp4163S163FtCttTt3232AY.250.000192
ORF1ab/nsp4163S163FtCttTt3232B.10.000293
ORF1ab/nsp4163S163FtCttTt2424B.1.438.10.002574
ORF1ab/nsp4163S163FtCttTt2020AY.1030.000124
ORF1ab/nsp4163S163FtCttTt1919B.1.36.80.019
ORF1ab/nsp4163S163FtCttTt1919P.10.000299
ORF1ab/nsp4163S163FtCttTt1717B.1.1770.000224
ORF1ab/nsp4163S163FtCttTt1616B.1.177.810.003029
ORF1ab/nsp4163S163FtCttTt1616B.1.4710.043716
ORF1ab/nsp4163S163FtCttTt1515AY.60.000617
ORF1ab/nsp4163S163FtCttTt1414AY.430.000062
ORF1ab/nsp4163S163FtCttTt1212P.20.00224
ORF1ab/nsp4163S163FtCttTt1111AY.7.10.00124
ORF1ab/nsp4163S163FtCttTt1111B.1.10.0002
ORF1ab/nsp4163S163FtCttTt1111B.1.3510.000327
ORF1ab/nsp4163S163FtCttTt1010B.1.1600.000312
ORF1ab/nsp4163S163FtCttTt1010B.1.6370.000731
ORF1ab/nsp4163S163FtCttTt99AY.99.20.000829
ORF1ab/nsp4163S163FtCttTt88AY.440.000049
ORF1ab/nsp4163S163FtCttTt77AY.200.000272
ORF1ab/nsp4163S163FtCttTt66AY.50.000124
ORF1ab/nsp4163S163FtCttTt66B.1.1.1150.053571
ORF1ab/nsp4163S163FtCttTt55AY.390.000124
ORF1ab/nsp4163S163FtCttTt55AY.39.10.000198
ORF1ab/nsp4163S163FtCttTt55AY.470.000156
ORF1ab/nsp4163S163FtCttTt55B.1.4000.002145
ORF1ab/nsp4163S163FtCttTt55B.1.5260.000118
ORF1ab/nsp4163S163FtCttTt55P.50.068493
ORF1ab/nsp4163S163FtCttTt44AY.1200.000149
ORF1ab/nsp4163S163FtCttTt44AY.330.000267
ORF1ab/nsp4163S163FtCttTt44B.1.1.2140.000222
ORF1ab/nsp4163S163FtCttTt44B.1.6090.001918
ORF1ab/nsp4163S163FtCttTt230.111111
ORF1ab/nsp4163S163FtCttTt33A0.001161
ORF1ab/nsp4163S163FtCttTt33B.1.1.3330.003229
ORF1ab/nsp4163S163FtCttTt33B.1.2210.000213
ORF1ab/nsp4163S163FtCttTt33B.1.5870.005693
ORF1ab/nsp4163S163FtCttTt33B.1.5950.000783
ORF1ab/nsp4163S163FtCttTt33B.1.6230.001609
ORF1ab/nsp4163S163FtCttTt33P.1.150.000697
ORF1ab/nsp4163S163FtCttTt22AY.1010.000981
ORF1ab/nsp4163S163FtCttTt22AY.1020.000053
ORF1ab/nsp4163S163FtCttTt22AY.290.000032
ORF1ab/nsp4163S163FtCttTt22AY.4.20.000043
ORF1ab/nsp4163S163FtCttTt22AY.450.000243
ORF1ab/nsp4163S163FtCttTt22AY.630.000774
ORF1ab/nsp4163S163FtCttTt22AY.750.000112
ORF1ab/nsp4163S163FtCttTt22B.1.1.3060.000877
ORF1ab/nsp4163S163FtCttTt22B.1.3110.000549
ORF1ab/nsp4163S163FtCttTt22B.1.36.240.012346
ORF1ab/nsp4163S163FtCttTt22B.1.4270.000101
ORF1ab/nsp4163S163FtCttTt22B.1.5230.004902
ORF1ab/nsp4163S163FtCttTt22B.1.617.10.000258
ORF1ab/nsp4163S163FtCttTt22B.1.6200.001892
ORF1ab/nsp4163S163FtCttTt11AY.1060.000335
ORF1ab/nsp4163S163FtCttTt11AY.1110.000183
ORF1ab/nsp4163S163FtCttTt11AY.1130.000142
ORF1ab/nsp4163S163FtCttTt11AY.1140.000231
ORF1ab/nsp4163S163FtCttTt11AY.1180.000063
ORF1ab/nsp4163S163FtCttTt11AY.1210.000135
ORF1ab/nsp4163S163FtCttTt11AY.16.10.00047
ORF1ab/nsp4163S163FtCttTt11AY.270.000065
ORF1ab/nsp4163S163FtCttTt11AY.29.10.000221
ORF1ab/nsp4163S163FtCttTt11AY.300.000396
ORF1ab/nsp4163S163FtCttTt11AY.39.20.001541
ORF1ab/nsp4163S163FtCttTt11AY.4.2.10.000149
ORF1ab/nsp4163S163FtCttTt11AY.4.50.000107
ORF1ab/nsp4163S163FtCttTt11AY.410.000294
ORF1ab/nsp4163S163FtCttTt11AY.5.30.000337
ORF1ab/nsp4163S163FtCttTt11AY.720.001361
ORF1ab/nsp4163S163FtCttTt11AY.740.000116
ORF1ab/nsp4163S163FtCttTt11AY.9.20.000037
ORF1ab/nsp4163S163FtCttTt11AY.970.001701
ORF1ab/nsp4163S163FtCttTt11AY.98.10.000048
ORF1ab/nsp4163S163FtCttTt11B.1.1.1760.000439
ORF1ab/nsp4163S163FtCttTt11B.1.1.2160.00089
ORF1ab/nsp4163S163FtCttTt11B.1.1.2220.000204
ORF1ab/nsp4163S163FtCttTt11B.1.1.2410.00207
ORF1ab/nsp4163S163FtCttTt11B.1.1.280.000311
ORF1ab/nsp4163S163FtCttTt11B.1.1.2840.000107
ORF1ab/nsp4163S163FtCttTt11B.1.1.3170.000412
ORF1ab/nsp4163S163FtCttTt11B.1.1.3260.001761
ORF1ab/nsp4163S163FtCttTt11B.1.1.3480.000796
ORF1ab/nsp4163S163FtCttTt11B.1.1.440.00241
ORF1ab/nsp4163S163FtCttTt11B.1.160.160.000929
ORF1ab/nsp4163S163FtCttTt11B.1.177.460.000918
ORF1ab/nsp4163S163FtCttTt11B.1.177.570.000281
ORF1ab/nsp4163S163FtCttTt11B.1.2410.000812
ORF1ab/nsp4163S163FtCttTt11B.1.360.000146
ORF1ab/nsp4163S163FtCttTt11B.1.3670.000792
ORF1ab/nsp4163S163FtCttTt11B.1.3690.000285
ORF1ab/nsp4163S163FtCttTt11B.1.3960.000706
ORF1ab/nsp4163S163FtCttTt11B.1.3970.004854
ORF1ab/nsp4163S163FtCttTt11B.1.5480.035714
ORF1ab/nsp4163S163FtCttTt11B.1.5600.00463
ORF1ab/nsp4163S163FtCttTt11B.1.5760.000907
ORF1ab/nsp4163S163FtCttTt11B.1.5800.004065
ORF1ab/nsp4163S163FtCttTt11B.1.5880.00091
ORF1ab/nsp4163S163FtCttTt11B.1.596.10.009346
ORF1ab/nsp4163S163FtCttTt11B.1.6280.000352
ORF1ab/nsp4163S163FtCttTt11B.280.003279
ORF1ab/nsp4163S163FtCttTt11C.370.000116
ORF1ab/nsp4163S163FtCttTt11D.20.000075
ORF1ab/nsp4163S163FtCttTt11N.90.005952
ORF1ab/nsp4163S163FtCttTt11P.1.120.000484
ORF1ab/nsp4163S163FtCttTt11P.1.140.000048
ORF1ab/nsp4163S163FtCttTt11P.1.170.000162
ORF1ab/nsp4163S163FtCttTt11Q.80.000165
ORF1ab/nsp4163S163FtCttTt11R.10.00009
ORF1ab/nsp4163S163FtCttTt11W.20.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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