CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 163

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4163S163FS2926FnonsyntCttTt181118100.9994489041-9043
ORF1ab/nsp4163S163FS2926FnonsyntCTtTC181110.0005521819041-9043
ORF1ab/nsp4163S163SS2926SsyntcTtcC136870.6397069041-9043
ORF1ab/nsp4163S163SS2926SsyntcTtcA136440.3235299041-9043
ORF1ab/nsp4163S163SS2926SsyntcTtcG13650.03676479041-9043
ORF1ab/nsp4163S163AS2926AnonsynTctGct1211180.9752079041-9043
ORF1ab/nsp4163S163AS2926AnonsynTcTGcA12120.01652899041-9043
ORF1ab/nsp4163S163AS2926AnonsynTcTGcC12110.008264469041-9043
ORF1ab/nsp4163S163delS2926deldelTCT---888819041-9043
ORF1ab/nsp4163S163YS2926YnonsyntCttAt878719041-9043
ORF1ab/nsp4163S163PS2926PnonsynTctCct151519041-9043
ORF1ab/nsp4163S163TS2926TnonsynTctAct7719041-9043
ORF1ab/nsp4163S163RS2926RnonsynTCtCGt420.59041-9043
ORF1ab/nsp4163S163RS2926RnonsynTCTCGA420.59041-9043
ORF1ab/nsp4163S163del1S2926del1delTct-ct320.6666679041-9043
ORF1ab/nsp4163S163del1S2926del1deltCtt-t310.3333339041-9043
ORF1ab/nsp4163S163DS2926DnonsynTCtGAt2219041-9043
ORF1ab/nsp4163S163ES2926EnonsynTCTGAA2219041-9043
ORF1ab/nsp4163S163CS2926CnonsyntCttGt2219041-9043
ORF1ab/nsp4163S163XS2926XnonsyntCTtAA2219041-9043
ORF1ab/nsp4163S163LS2926LnonsynTCtCTt2219041-9043
ORF1ab/nsp4163S163del2S2926del2delTCt--t1119041-9043

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4163S163FtCttTt18101811All0.000346
ORF1ab/nsp4163S163FtCTtTC11811All0
ORF1ab/nsp4163S163FtCttTt356356B.1.20.003135
ORF1ab/nsp4163S163FtCttTt195195B.1.1.70.000175
ORF1ab/nsp4163S163FtCttTt149149B.1.6321
ORF1ab/nsp4163S163StcTtcC87136All0.000017
ORF1ab/nsp4163S163StcTtcA44136All0.000008
ORF1ab/nsp4163S163StcTtcG5136All0.000001
ORF1ab/nsp4163S163ATctGct118121All0.000023
ORF1ab/nsp4163S163ATcTGcA2121All0
ORF1ab/nsp4163S163ATcTGcC1121All0
ORF1ab/nsp4163S163FtCttTt100100AY.40.000156
ORF1ab/nsp4163S163delTCT---8888All0.000017
ORF1ab/nsp4163S163FtCttTt8888B.1.2430.006123
ORF1ab/nsp4163S163YtCttAt8787All0.000017
ORF1ab/nsp4163S163FtCttTt6969B.1.243.21
ORF1ab/nsp4163S163FtCttTt5454AY.260.001529
ORF1ab/nsp4163S163FtCttTt4646AY.140.004049
ORF1ab/nsp4163S163FtCttTt4646B.1.4290.001082
ORF1ab/nsp4163S163FtCttTt4343AY.230.002999
ORF1ab/nsp4163S163FtCttTt4040B.1.617.20.000151
ORF1ab/nsp4163S163FtCttTt3838AY.1190.001342
ORF1ab/nsp4163S163FtCttTt3838AY.30.000378
ORF1ab/nsp4163S163delTCT---3737B.1.1.70.000033
ORF1ab/nsp4163S163FtCttTt3636B.1.258.170.003743
ORF1ab/nsp4163S163FtCttTt3434B.1.6210.00301
ORF1ab/nsp4163S163FtCttTt3232AY.250.000192
ORF1ab/nsp4163S163FtCttTt3232B.10.000293
ORF1ab/nsp4163S163ATctGct2929B.1.1.70.000026
ORF1ab/nsp4163S163StcTtcC2129B.1.1.70.000019
ORF1ab/nsp4163S163StcTtcA729B.1.1.70.000006
ORF1ab/nsp4163S163StcTtcG129B.1.1.70.000001
ORF1ab/nsp4163S163ATctGct2929B.1.617.20.000109
ORF1ab/nsp4163S163FtCttTt2424B.1.438.10.002574
ORF1ab/nsp4163S163YtCttAt2323B.1.1.70.000021
ORF1ab/nsp4163S163FtCttTt2020AY.1030.000124
ORF1ab/nsp4163S163FtCttTt1919B.1.36.80.019
ORF1ab/nsp4163S163FtCttTt1919P.10.000299
ORF1ab/nsp4163S163StcTtcA1518B.1.1600.000468
ORF1ab/nsp4163S163StcTtcC318B.1.1600.000094
ORF1ab/nsp4163S163FtCttTt1717B.1.1770.000224
ORF1ab/nsp4163S163FtCttTt1616B.1.177.810.003029
ORF1ab/nsp4163S163FtCttTt1616B.1.4710.043716
ORF1ab/nsp4163S163PTctCct1515All0.000003
ORF1ab/nsp4163S163FtCttTt1515AY.60.000617
ORF1ab/nsp4163S163ATctGct1515B.10.000137
ORF1ab/nsp4163S163FtCttTt1414AY.430.000062
ORF1ab/nsp4163S163YtCttAt1414AY.700.002919
ORF1ab/nsp4163S163FtCttTt1212P.20.00224
ORF1ab/nsp4163S163StcTtcC811AY.430.000035
ORF1ab/nsp4163S163StcTtcA311AY.430.000013
ORF1ab/nsp4163S163FtCttTt1111AY.7.10.00124
ORF1ab/nsp4163S163FtCttTt1111B.1.10.0002
ORF1ab/nsp4163S163FtCttTt1111B.1.3510.000327
ORF1ab/nsp4163S163FtCttTt1010B.1.1600.000312
ORF1ab/nsp4163S163StcTtcA1010B.1.6210.000885
ORF1ab/nsp4163S163FtCttTt1010B.1.6370.000731
ORF1ab/nsp4163S163FtCttTt99AY.99.20.000829
ORF1ab/nsp4163S163delTCT---88AY.430.000035
ORF1ab/nsp4163S163FtCttTt88AY.440.000049
ORF1ab/nsp4163S163TTctAct77All0.000001
ORF1ab/nsp4163S163FtCttTt77AY.200.000272
ORF1ab/nsp4163S163YtCttAt66AY.40.000009
ORF1ab/nsp4163S163FtCttTt66AY.50.000124
ORF1ab/nsp4163S163FtCttTt66B.1.1.1150.053571
ORF1ab/nsp4163S163ATctGct66B.1.20.000053
ORF1ab/nsp4163S163StcTtcC66B.1.5770.004124
ORF1ab/nsp4163S163StcTtcC66B.1.617.20.000023
ORF1ab/nsp4163S163YtCttAt66B.1.617.20.000023
ORF1ab/nsp4163S163StcTtcA450.222222
ORF1ab/nsp4163S163StcTtcC150.055556
ORF1ab/nsp4163S163FtCttTt55AY.390.000124
ORF1ab/nsp4163S163FtCttTt55AY.39.10.000198
ORF1ab/nsp4163S163StcTtcC55AY.40.000008
ORF1ab/nsp4163S163ATctGct45AY.430.000018
ORF1ab/nsp4163S163ATcTGcC15AY.430.000004
ORF1ab/nsp4163S163FtCttTt55AY.470.000156
ORF1ab/nsp4163S163YtCttAt55B.1.10.000091
ORF1ab/nsp4163S163TTctAct55B.1.1.70.000004
ORF1ab/nsp4163S163FtCttTt55B.1.4000.002145
ORF1ab/nsp4163S163FtCttTt55B.1.5260.000118
ORF1ab/nsp4163S163ATctGct55B.1.6280.001762
ORF1ab/nsp4163S163FtCttTt55P.50.068493
ORF1ab/nsp4163S163ATctGct240.111111
ORF1ab/nsp4163S163ATcTGcA240.111111
ORF1ab/nsp4163S163RTCtCGt24All0
ORF1ab/nsp4163S163RTCTCGA24All0
ORF1ab/nsp4163S163FtCttTt44AY.1200.000149
ORF1ab/nsp4163S163FtCttTt44AY.330.000267
ORF1ab/nsp4163S163FtCttTt44B.1.1.2140.000222
ORF1ab/nsp4163S163StcTtcC44B.1.1.3170.001647
ORF1ab/nsp4163S163StcTtcC44B.1.1.3710.041667
ORF1ab/nsp4163S163ATctGct44B.1.4290.000094
ORF1ab/nsp4163S163FtCttTt44B.1.6090.001918
ORF1ab/nsp4163S163StcTtcC44P.10.000063
ORF1ab/nsp4163S163FtCttTt230.111111
ORF1ab/nsp4163S163FtCTtTC130.055556
ORF1ab/nsp4163S163FtCttTt33A0.001161
ORF1ab/nsp4163S163del1Tct-ct23All0
ORF1ab/nsp4163S163del1tCtt-t13All0
ORF1ab/nsp4163S163ATctGct33AY.160.001139
ORF1ab/nsp4163S163ATctGct33AY.230.000209
ORF1ab/nsp4163S163YtCttAt33AY.250.000018
ORF1ab/nsp4163S163StcTtcC33AY.320.001597
ORF1ab/nsp4163S163YtCttAt33AY.350.000699
ORF1ab/nsp4163S163delTCT---33AY.4.50.000322
ORF1ab/nsp4163S163PTctCct33B.10.000027
ORF1ab/nsp4163S163YtCttAt33B.10.000027
ORF1ab/nsp4163S163ATctGct33B.1.10.000054
ORF1ab/nsp4163S163FtCttTt33B.1.1.3330.003229
ORF1ab/nsp4163S163delTCT---33B.1.1770.00004
ORF1ab/nsp4163S163delTCT---33B.1.177.630.008108
ORF1ab/nsp4163S163FtCttTt33B.1.2210.000213
ORF1ab/nsp4163S163FtCttTt33B.1.5870.005693
ORF1ab/nsp4163S163FtCttTt33B.1.5950.000783
ORF1ab/nsp4163S163delTCT---33B.1.617.20.000011
ORF1ab/nsp4163S163FtCttTt33B.1.6230.001609
ORF1ab/nsp4163S163FtCttTt33P.1.150.000697
ORF1ab/nsp4163S163ETCTGAA220.111111
ORF1ab/nsp4163S163XtCTtAA220.111111
ORF1ab/nsp4163S163DTCtGAt220.111111
ORF1ab/nsp4163S163RTCTCGA220.111111
ORF1ab/nsp4163S163YtCttAt220.111111
ORF1ab/nsp4163S163DTCtGAt22All0
ORF1ab/nsp4163S163LTCtCTt22All0
ORF1ab/nsp4163S163XtCTtAA22All0
ORF1ab/nsp4163S163ETCTGAA22All0
ORF1ab/nsp4163S163CtCttGt22All0
ORF1ab/nsp4163S163StcTtcC22AY.1000.000092
ORF1ab/nsp4163S163FtCttTt22AY.1010.000981
ORF1ab/nsp4163S163ATctGct22AY.1020.000053
ORF1ab/nsp4163S163FtCttTt22AY.1020.000053
ORF1ab/nsp4163S163StcTtcC22AY.1020.000053
ORF1ab/nsp4163S163StcTtcG22AY.1030.000012
ORF1ab/nsp4163S163delTCT---22AY.1200.000074
ORF1ab/nsp4163S163StcTtcC22AY.130.000322
ORF1ab/nsp4163S163StcTtcC22AY.230.000139
ORF1ab/nsp4163S163YtCttAt22AY.260.000057
ORF1ab/nsp4163S163FtCttTt22AY.290.000032
ORF1ab/nsp4163S163PTctCct22AY.40.000003
ORF1ab/nsp4163S163FtCttTt22AY.4.20.000043
ORF1ab/nsp4163S163ATctGct22AY.440.000012
ORF1ab/nsp4163S163YtCttAt22AY.440.000012
ORF1ab/nsp4163S163StcTtcA12AY.440.000006
ORF1ab/nsp4163S163StcTtcC12AY.440.000006
ORF1ab/nsp4163S163FtCttTt22AY.450.000243
ORF1ab/nsp4163S163FtCttTt22AY.630.000774
ORF1ab/nsp4163S163FtCttTt22AY.750.000112
ORF1ab/nsp4163S163delTCT---22B.10.000018
ORF1ab/nsp4163S163delTCT---22B.1.10.000036
ORF1ab/nsp4163S163FtCttTt22B.1.1.3060.000877
ORF1ab/nsp4163S163YtCttAt22B.1.110.30.001437
ORF1ab/nsp4163S163delTCT---22B.1.177.180.00232
ORF1ab/nsp4163S163delTCT---22B.1.20.000018
ORF1ab/nsp4163S163FtCttTt22B.1.3110.000549
ORF1ab/nsp4163S163FtCttTt22B.1.36.240.012346
ORF1ab/nsp4163S163YtCttAt22B.1.36.290.001035
ORF1ab/nsp4163S163FtCttTt22B.1.4270.000101
ORF1ab/nsp4163S163FtCttTt22B.1.5230.004902
ORF1ab/nsp4163S163FtCttTt22B.1.617.10.000258
ORF1ab/nsp4163S163FtCttTt22B.1.6200.001892
ORF1ab/nsp4163S163ATctGct22C.350.001548
ORF1ab/nsp4163S163YtCttAt22C.370.000232
ORF1ab/nsp4163S163delTCT---11A0.000387
ORF1ab/nsp4163S163StcTtcC11A.2.40.003367
ORF1ab/nsp4163S163del2TCt--t11All0
ORF1ab/nsp4163S163StcTtcC11AY.10.000396
ORF1ab/nsp4163S163YtCttAt11AY.1010.00049
ORF1ab/nsp4163S163YtCttAt11AY.1030.000006
ORF1ab/nsp4163S163ATctGct11AY.1030.000006
ORF1ab/nsp4163S163FtCttTt11AY.1060.000335
ORF1ab/nsp4163S163StcTtcC11AY.1100.000113
ORF1ab/nsp4163S163FtCttTt11AY.1110.000183
ORF1ab/nsp4163S163FtCttTt11AY.1130.000142
ORF1ab/nsp4163S163FtCttTt11AY.1140.000231
ORF1ab/nsp4163S163FtCttTt11AY.1180.000063
ORF1ab/nsp4163S163StcTtcC11AY.1190.000035
ORF1ab/nsp4163S163FtCttTt11AY.1210.000135
ORF1ab/nsp4163S163ATctGct11AY.130.000161
ORF1ab/nsp4163S163StcTtcC11AY.150.002222
ORF1ab/nsp4163S163FtCttTt11AY.16.10.00047
ORF1ab/nsp4163S163delTCT---11AY.250.000006
ORF1ab/nsp4163S163PTctCct11AY.250.000006
ORF1ab/nsp4163S163StcTtcA11AY.250.000006
ORF1ab/nsp4163S163PTctCct11AY.270.000065
ORF1ab/nsp4163S163FtCttTt11AY.270.000065
ORF1ab/nsp4163S163FtCttTt11AY.29.10.000221
ORF1ab/nsp4163S163YtCttAt11AY.30.00001
ORF1ab/nsp4163S163FtCttTt11AY.300.000396
ORF1ab/nsp4163S163ATctGct11AY.320.000532
ORF1ab/nsp4163S163StcTtcA11AY.340.000097
ORF1ab/nsp4163S163del2TCt--t11AY.390.000025
ORF1ab/nsp4163S163FtCttTt11AY.39.20.001541
ORF1ab/nsp4163S163TTctAct11AY.40.000002
ORF1ab/nsp4163S163delTCT---11AY.40.000002
ORF1ab/nsp4163S163FtCttTt11AY.4.2.10.000149
ORF1ab/nsp4163S163FtCttTt11AY.4.50.000107
ORF1ab/nsp4163S163FtCttTt11AY.410.000294
ORF1ab/nsp4163S163YtCttAt11AY.430.000004
ORF1ab/nsp4163S163RTCtCGt11AY.430.000004
ORF1ab/nsp4163S163PTctCct11AY.430.000004
ORF1ab/nsp4163S163YtCttAt11AY.450.000122
ORF1ab/nsp4163S163PTctCct11AY.50.000021
ORF1ab/nsp4163S163FtCttTt11AY.5.30.000337
ORF1ab/nsp4163S163StcTtcC11AY.590.00053
ORF1ab/nsp4163S163delTCT---11AY.60.000041
ORF1ab/nsp4163S163RTCtCGt11AY.670.000464
ORF1ab/nsp4163S163LTCtCTt11AY.670.000464
ORF1ab/nsp4163S163StcTtcC11AY.710.000475
ORF1ab/nsp4163S163FtCttTt11AY.720.001361
ORF1ab/nsp4163S163delTCT---11AY.720.001361
ORF1ab/nsp4163S163FtCttTt11AY.740.000116
ORF1ab/nsp4163S163StcTtcC11AY.750.000056
ORF1ab/nsp4163S163CtCttGt11AY.880.000884
ORF1ab/nsp4163S163delTCT---11AY.90.000068
ORF1ab/nsp4163S163FtCttTt11AY.9.20.000037
ORF1ab/nsp4163S163delTCT---11AY.950.000761
ORF1ab/nsp4163S163FtCttTt11AY.970.001701
ORF1ab/nsp4163S163FtCttTt11AY.98.10.000048
ORF1ab/nsp4163S163delTCT---11AY.990.001049
ORF1ab/nsp4163S163PTctCct11B0.000128
ORF1ab/nsp4163S163TTctAct11B.10.000009
ORF1ab/nsp4163S163del1tCtt-t11B.10.000009
ORF1ab/nsp4163S163StcTtcC11B.1.10.000018
ORF1ab/nsp4163S163FtCttTt11B.1.1.1760.000439
ORF1ab/nsp4163S163FtCttTt11B.1.1.2160.00089
ORF1ab/nsp4163S163FtCttTt11B.1.1.2220.000204
ORF1ab/nsp4163S163FtCttTt11B.1.1.2410.00207
ORF1ab/nsp4163S163PTctCct11B.1.1.250.000569
ORF1ab/nsp4163S163ATctGct11B.1.1.250.000569
ORF1ab/nsp4163S163delTCT---11B.1.1.280.000311
ORF1ab/nsp4163S163FtCttTt11B.1.1.280.000311
ORF1ab/nsp4163S163FtCttTt11B.1.1.2840.000107
ORF1ab/nsp4163S163YtCttAt11B.1.1.2840.000107
ORF1ab/nsp4163S163FtCttTt11B.1.1.3170.000412
ORF1ab/nsp4163S163FtCttTt11B.1.1.3260.001761
ORF1ab/nsp4163S163FtCttTt11B.1.1.3480.000796
ORF1ab/nsp4163S163YtCttAt11B.1.1.3980.003226
ORF1ab/nsp4163S163YtCttAt11B.1.1.4320.001266
ORF1ab/nsp4163S163FtCttTt11B.1.1.440.00241
ORF1ab/nsp4163S163ATctGct11B.1.1.460.004367
ORF1ab/nsp4163S163StcTtcA11B.1.1.4850.016667
ORF1ab/nsp4163S163del1Tct-ct11B.1.1.70.000001
ORF1ab/nsp4163S163YtCttAt11B.1.1470.000756
ORF1ab/nsp4163S163PTctCct11B.1.1600.000031
ORF1ab/nsp4163S163FtCttTt11B.1.160.160.000929
ORF1ab/nsp4163S163PTctCct11B.1.1770.000013
ORF1ab/nsp4163S163ATctGct11B.1.1770.000013
ORF1ab/nsp4163S163delTCT---11B.1.177.100.000878
ORF1ab/nsp4163S163delTCT---11B.1.177.40.000211
ORF1ab/nsp4163S163FtCttTt11B.1.177.460.000918
ORF1ab/nsp4163S163delTCT---11B.1.177.480.003125
ORF1ab/nsp4163S163FtCttTt11B.1.177.570.000281
ORF1ab/nsp4163S163YtCttAt11B.1.177.730.000566
ORF1ab/nsp4163S163delTCT---11B.1.177.810.000189
ORF1ab/nsp4163S163del1Tct-ct11B.1.177.870.000728
ORF1ab/nsp4163S163delTCT---11B.1.177.870.000728
ORF1ab/nsp4163S163StcTtcG11B.1.20.000009
ORF1ab/nsp4163S163LTCtCTt11B.1.20.000009
ORF1ab/nsp4163S163YtCttAt11B.1.20.000009
ORF1ab/nsp4163S163StcTtcC11B.1.2010.005682
ORF1ab/nsp4163S163FtCttTt11B.1.2410.000812
ORF1ab/nsp4163S163delTCT---11B.1.2420.018868
ORF1ab/nsp4163S163YtCttAt11B.1.2580.000067
ORF1ab/nsp4163S163delTCT---11B.1.258.30.001675
ORF1ab/nsp4163S163FtCttTt11B.1.360.000146
ORF1ab/nsp4163S163delTCT---11B.1.36.180.00042
ORF1ab/nsp4163S163StcTtcA11B.1.36.190.009259
ORF1ab/nsp4163S163delTCT---11B.1.36.380.001642
ORF1ab/nsp4163S163FtCttTt11B.1.3670.000792
ORF1ab/nsp4163S163FtCttTt11B.1.3690.000285
ORF1ab/nsp4163S163FtCttTt11B.1.3960.000706
ORF1ab/nsp4163S163FtCttTt11B.1.3970.004854
ORF1ab/nsp4163S163StcTtcG11B.1.4970.000315
ORF1ab/nsp4163S163CtCttGt11B.1.5260.000024
ORF1ab/nsp4163S163FtCttTt11B.1.5480.035714
ORF1ab/nsp4163S163FtCttTt11B.1.5600.00463
ORF1ab/nsp4163S163FtCttTt11B.1.5760.000907
ORF1ab/nsp4163S163delTCT---11B.1.5770.000687
ORF1ab/nsp4163S163FtCttTt11B.1.5800.004065
ORF1ab/nsp4163S163FtCttTt11B.1.5880.00091
ORF1ab/nsp4163S163FtCttTt11B.1.596.10.009346
ORF1ab/nsp4163S163StcTtcC11B.1.617.10.000129
ORF1ab/nsp4163S163FtCttTt11B.1.6280.000352
ORF1ab/nsp4163S163PTctCct11B.1.6370.000073
ORF1ab/nsp4163S163StcTtcC11B.1.780.008547
ORF1ab/nsp4163S163PTctCct11B.1.88.10.004808
ORF1ab/nsp4163S163delTCT---11B.150.017544
ORF1ab/nsp4163S163FtCttTt11B.280.003279
ORF1ab/nsp4163S163ATctGct11B.390.002331
ORF1ab/nsp4163S163FtCttTt11C.370.000116
ORF1ab/nsp4163S163FtCttTt11D.20.000075
ORF1ab/nsp4163S163FtCttTt11N.90.005952
ORF1ab/nsp4163S163FtCttTt11P.1.120.000484
ORF1ab/nsp4163S163FtCttTt11P.1.140.000048
ORF1ab/nsp4163S163FtCttTt11P.1.170.000162
ORF1ab/nsp4163S163StcTtcC11P.1.20.001156
ORF1ab/nsp4163S163ATctGct11P.20.000187
ORF1ab/nsp4163S163delTCT---11Q.10.000126
ORF1ab/nsp4163S163ATctGct11Q.20.000613
ORF1ab/nsp4163S163FtCttTt11Q.80.000165
ORF1ab/nsp4163S163FtCttTt11R.10.00009
ORF1ab/nsp4163S163FtCttTt11W.20.004831