CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 163 | S163F | S2926F | nonsyn | tCt | tTt | 1811 | 1810 | 0.999448 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163F | S2926F | nonsyn | tCT | tTC | 1811 | 1 | 0.000552181 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163S | S2926S | syn | tcT | tcC | 136 | 87 | 0.639706 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163S | S2926S | syn | tcT | tcA | 136 | 44 | 0.323529 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163S | S2926S | syn | tcT | tcG | 136 | 5 | 0.0367647 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163A | S2926A | nonsyn | Tct | Gct | 121 | 118 | 0.975207 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163A | S2926A | nonsyn | TcT | GcA | 121 | 2 | 0.0165289 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163A | S2926A | nonsyn | TcT | GcC | 121 | 1 | 0.00826446 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163del | S2926del | del | TCT | --- | 88 | 88 | 1 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163Y | S2926Y | nonsyn | tCt | tAt | 87 | 87 | 1 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163P | S2926P | nonsyn | Tct | Cct | 15 | 15 | 1 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163T | S2926T | nonsyn | Tct | Act | 7 | 7 | 1 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163R | S2926R | nonsyn | TCt | CGt | 4 | 2 | 0.5 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163R | S2926R | nonsyn | TCT | CGA | 4 | 2 | 0.5 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163del1 | S2926del1 | del | Tct | -ct | 3 | 2 | 0.666667 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163del1 | S2926del1 | del | tCt | t-t | 3 | 1 | 0.333333 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163D | S2926D | nonsyn | TCt | GAt | 2 | 2 | 1 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163E | S2926E | nonsyn | TCT | GAA | 2 | 2 | 1 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163C | S2926C | nonsyn | tCt | tGt | 2 | 2 | 1 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163X | S2926X | nonsyn | tCT | tAA | 2 | 2 | 1 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163L | S2926L | nonsyn | TCt | CTt | 2 | 2 | 1 | 9041-9043 |
ORF1ab/nsp4 | 163 | S163del2 | S2926del2 | del | TCt | --t | 1 | 1 | 1 | 9041-9043 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1810 | 1811 | All | 0.000346 |
ORF1ab/nsp4 | 163 | S163F | tCT | tTC | 1 | 1811 | All | 0 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 356 | 356 | B.1.2 | 0.003135 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 195 | 195 | B.1.1.7 | 0.000175 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 149 | 149 | B.1.632 | 1 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 87 | 136 | All | 0.000017 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 44 | 136 | All | 0.000008 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcG | 5 | 136 | All | 0.000001 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 118 | 121 | All | 0.000023 |
ORF1ab/nsp4 | 163 | S163A | TcT | GcA | 2 | 121 | All | 0 |
ORF1ab/nsp4 | 163 | S163A | TcT | GcC | 1 | 121 | All | 0 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 100 | 100 | AY.4 | 0.000156 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 88 | 88 | All | 0.000017 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 88 | 88 | B.1.243 | 0.006123 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 87 | 87 | All | 0.000017 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 69 | 69 | B.1.243.2 | 1 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 54 | 54 | AY.26 | 0.001529 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 46 | 46 | AY.14 | 0.004049 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 46 | 46 | B.1.429 | 0.001082 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 43 | 43 | AY.23 | 0.002999 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 40 | 40 | B.1.617.2 | 0.000151 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 38 | 38 | AY.119 | 0.001342 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 38 | 38 | AY.3 | 0.000378 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 37 | 37 | B.1.1.7 | 0.000033 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 36 | 36 | B.1.258.17 | 0.003743 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 34 | 34 | B.1.621 | 0.00301 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 32 | 32 | AY.25 | 0.000192 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 32 | 32 | B.1 | 0.000293 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 29 | 29 | B.1.1.7 | 0.000026 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 21 | 29 | B.1.1.7 | 0.000019 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 7 | 29 | B.1.1.7 | 0.000006 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcG | 1 | 29 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 29 | 29 | B.1.617.2 | 0.000109 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 24 | 24 | B.1.438.1 | 0.002574 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 23 | 23 | B.1.1.7 | 0.000021 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 20 | 20 | AY.103 | 0.000124 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 19 | 19 | B.1.36.8 | 0.019 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 19 | 19 | P.1 | 0.000299 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 15 | 18 | B.1.160 | 0.000468 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 3 | 18 | B.1.160 | 0.000094 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 16 | 16 | B.1.177.81 | 0.003029 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 16 | 16 | B.1.471 | 0.043716 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 15 | 15 | All | 0.000003 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 15 | 15 | AY.6 | 0.000617 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 15 | 15 | B.1 | 0.000137 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 14 | 14 | AY.70 | 0.002919 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 12 | 12 | P.2 | 0.00224 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 8 | 11 | AY.43 | 0.000035 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 3 | 11 | AY.43 | 0.000013 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 11 | 11 | AY.7.1 | 0.00124 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 11 | 11 | B.1.1 | 0.0002 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 11 | 11 | B.1.351 | 0.000327 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 10 | 10 | B.1.637 | 0.000731 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp4 | 163 | S163T | Tct | Act | 7 | 7 | All | 0.000001 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 7 | 7 | AY.20 | 0.000272 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 6 | 6 | AY.5 | 0.000124 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 6 | 6 | B.1.1.115 | 0.053571 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 6 | 6 | B.1.577 | 0.004124 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 4 | 5 | 0.222222 | |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 5 | 0.055556 | |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 4 | 5 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 163 | S163A | TcT | GcC | 1 | 5 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp4 | 163 | S163T | Tct | Act | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 5 | 5 | B.1.400 | 0.002145 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 5 | 5 | B.1.628 | 0.001762 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 5 | 5 | P.5 | 0.068493 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 163 | S163A | TcT | GcA | 2 | 4 | 0.111111 | |
ORF1ab/nsp4 | 163 | S163R | TCt | CGt | 2 | 4 | All | 0 |
ORF1ab/nsp4 | 163 | S163R | TCT | CGA | 2 | 4 | All | 0 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 4 | 4 | B.1.1.214 | 0.000222 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 4 | 4 | B.1.1.371 | 0.041667 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 3 | 0.111111 | |
ORF1ab/nsp4 | 163 | S163F | tCT | tTC | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 3 | 3 | A | 0.001161 |
ORF1ab/nsp4 | 163 | S163del1 | Tct | -ct | 2 | 3 | All | 0 |
ORF1ab/nsp4 | 163 | S163del1 | tCt | t-t | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 3 | 3 | AY.35 | 0.000699 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 3 | 3 | B.1.1.333 | 0.003229 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 3 | 3 | B.1.177.63 | 0.008108 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 3 | 3 | B.1.587 | 0.005693 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp4 | 163 | S163E | TCT | GAA | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 163 | S163X | tCT | tAA | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 163 | S163D | TCt | GAt | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 163 | S163R | TCT | CGA | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 163 | S163D | TCt | GAt | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 163 | S163L | TCt | CTt | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 163 | S163X | tCT | tAA | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 163 | S163E | TCT | GAA | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 163 | S163C | tCt | tGt | 2 | 2 | All | 0 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcG | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | AY.63 | 0.000774 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | B.1.36.24 | 0.012346 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | B.1.523 | 0.004902 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp4 | 163 | S163del2 | TCt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp4 | 163 | S163del2 | TCt | --t | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp4 | 163 | S163T | Tct | Act | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 163 | S163R | TCt | CGt | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 163 | S163R | TCt | CGt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 163 | S163L | TCt | CTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 163 | S163C | tCt | tGt | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 163 | S163T | Tct | Act | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 163 | S163del1 | tCt | t-t | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 1 | 1 | B.1.1.46 | 0.004367 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp4 | 163 | S163del1 | Tct | -ct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | B.1.147 | 0.000756 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 163 | S163del1 | Tct | -ct | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 163 | S163L | TCt | CTt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | B.1.201 | 0.005682 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp4 | 163 | S163Y | tCt | tAt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcA | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcG | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 163 | S163C | tCt | tGt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.548 | 0.035714 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.596.1 | 0.009346 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | B.1.78 | 0.008547 |
ORF1ab/nsp4 | 163 | S163P | Tct | Cct | 1 | 1 | B.1.88.1 | 0.004808 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | N.9 | 0.005952 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp4 | 163 | S163S | tcT | tcC | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp4 | 163 | S163del | TCT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 163 | S163A | Tct | Gct | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp4 | 163 | S163F | tCt | tTt | 1 | 1 | W.2 | 0.004831 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|