CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 161

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4161D161DD2924DsyngaTgaC1411141119035-9037
ORF1ab/nsp4161D161GD2924GnonsyngAtgGt1261250.9920639035-9037
ORF1ab/nsp4161D161GD2924GnonsyngATgGG12610.007936519035-9037
ORF1ab/nsp4161D161delD2924deldelGAT---999919035-9037
ORF1ab/nsp4161D161ND2924NnonsynGatAat909019035-9037
ORF1ab/nsp4161D161ED2924EnonsyngaTgaG65420.6461549035-9037
ORF1ab/nsp4161D161ED2924EnonsyngaTgaA65230.3538469035-9037
ORF1ab/nsp4161D161AD2924AnonsyngAtgCt56540.9642869035-9037
ORF1ab/nsp4161D161AD2924AnonsyngATgCA5620.03571439035-9037
ORF1ab/nsp4161D161YD2924YnonsynGatTat212119035-9037
ORF1ab/nsp4161D161VD2924VnonsyngAtgTt870.8759035-9037
ORF1ab/nsp4161D161VD2924VnonsyngATgTA810.1259035-9037
ORF1ab/nsp4161D161HD2924HnonsynGatCat6619035-9037
ORF1ab/nsp4161D161ID2924InonsynGATATA420.59035-9037
ORF1ab/nsp4161D161ID2924InonsynGAtATt420.59035-9037
ORF1ab/nsp4161D161LD2924LnonsynGAtCTt320.6666679035-9037
ORF1ab/nsp4161D161KD2924KnonsynGaTAaG320.6666679035-9037
ORF1ab/nsp4161D161KD2924KnonsynGaTAaA310.3333339035-9037
ORF1ab/nsp4161D161del1D2924del1delGat-at310.3333339035-9037
ORF1ab/nsp4161D161LD2924LnonsynGATTTG310.3333339035-9037
ORF1ab/nsp4161D161del1D2924del1delgaTga-310.3333339035-9037
ORF1ab/nsp4161D161del1D2924del1delgAtg-t310.3333339035-9037
ORF1ab/nsp4161D161SD2924SnonsynGAtAGt2219035-9037
ORF1ab/nsp4161D161PD2924PnonsynGAtCCt2219035-9037
ORF1ab/nsp4161D161RD2924RnonsynGATAGG1119035-9037
ORF1ab/nsp4161D161del2D2924del2delGAt--t1119035-9037
ORF1ab/nsp4161D161TD2924TnonsynGATACC1119035-9037

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4161D161DgaTgaC14111411All0.00027
ORF1ab/nsp4161D161DgaTgaC466466B.1.1770.006136
ORF1ab/nsp4161D161DgaTgaC354354B.1.177.630.956757
ORF1ab/nsp4161D161DgaTgaC233233AY.290.003675
ORF1ab/nsp4161D161GgAtgGt125126All0.000024
ORF1ab/nsp4161D161GgATgGG1126All0
ORF1ab/nsp4161D161delGAT---9999All0.000019
ORF1ab/nsp4161D161NGatAat9090All0.000017
ORF1ab/nsp4161D161DgaTgaC8888AY.440.000536
ORF1ab/nsp4161D161EgaTgaG4265All0.000008
ORF1ab/nsp4161D161EgaTgaA2365All0.000004
ORF1ab/nsp4161D161AgAtgCt5456All0.00001
ORF1ab/nsp4161D161AgATgCA256All0
ORF1ab/nsp4161D161DgaTgaC4444B.1.1.3510.122905
ORF1ab/nsp4161D161delGAT---4040B.1.1.70.000036
ORF1ab/nsp4161D161DgaTgaC4040B.1.1.70.000036
ORF1ab/nsp4161D161DgaTgaC2626B.1.415.10.19697
ORF1ab/nsp4161D161YGatTat2121All0.000004
ORF1ab/nsp4161D161DgaTgaC2020B.1.617.20.000075
ORF1ab/nsp4161D161NGatAat1919AY.290.0003
ORF1ab/nsp4161D161GgAtgGt1818AY.1180.001128
ORF1ab/nsp4161D161GgAtgGt1515AY.40.000023
ORF1ab/nsp4161D161DgaTgaC1414B.1.10.000254
ORF1ab/nsp4161D161NGatAat1212AY.40.000019
ORF1ab/nsp4161D161AgAtgCt1212AY.540.001144
ORF1ab/nsp4161D161GgAtgGt1111AY.250.000066
ORF1ab/nsp4161D161DgaTgaC1111AY.40.000017
ORF1ab/nsp4161D161EgaTgaG1010AY.290.000158
ORF1ab/nsp4161D161NGatAat99AY.250.000054
ORF1ab/nsp4161D161delGAT---99AY.430.00004
ORF1ab/nsp4161D161EgaTgaG99B.1.4000.003861
ORF1ab/nsp4161D161VgAtgTt78All0.000001
ORF1ab/nsp4161D161VgATgTA18All0
ORF1ab/nsp4161D161DgaTgaC88AY.260.000226
ORF1ab/nsp4161D161GgAtgGt88B.1.1.70.000007
ORF1ab/nsp4161D161DgaTgaC77AY.1030.000043
ORF1ab/nsp4161D161NGatAat77AY.230.000488
ORF1ab/nsp4161D161DgaTgaC77AY.30.00007
ORF1ab/nsp4161D161GgAtgGt77AY.440.000043
ORF1ab/nsp4161D161NGatAat77B.1.1.70.000006
ORF1ab/nsp4161D161DgaTgaC77B.1.2430.000487
ORF1ab/nsp4161D161EgaTgaA67B.1.617.20.000023
ORF1ab/nsp4161D161EgaTgaG17B.1.617.20.000004
ORF1ab/nsp4161D161HGatCat66All0.000001
ORF1ab/nsp4161D161DgaTgaC66AY.1000.000276
ORF1ab/nsp4161D161EgaTgaG66AY.230.000418
ORF1ab/nsp4161D161DgaTgaC66AY.250.000036
ORF1ab/nsp4161D161AgAtgCt66AY.430.000027
ORF1ab/nsp4161D161AgAtgCt66AY.98.10.000291
ORF1ab/nsp4161D161EgaTgaA36B.1.1.70.000003
ORF1ab/nsp4161D161EgaTgaG36B.1.1.70.000003
ORF1ab/nsp4161D161GgAtgGt66B.1.617.20.000023
ORF1ab/nsp4161D161EgaTgaG45AY.1030.000025
ORF1ab/nsp4161D161EgaTgaA15AY.1030.000006
ORF1ab/nsp4161D161GgAtgGt55AY.200.000194
ORF1ab/nsp4161D161GgAtgGt55AY.30.00005
ORF1ab/nsp4161D161AgAtgCt55AY.40.000008
ORF1ab/nsp4161D161DgaTgaC55B.10.000046
ORF1ab/nsp4161D161DgaTgaC55B.1.1600.000156
ORF1ab/nsp4161D161AgATgCA240.111111
ORF1ab/nsp4161D161AgAtgCt240.111111
ORF1ab/nsp4161D161IGATATA24All0
ORF1ab/nsp4161D161IGAtATt24All0
ORF1ab/nsp4161D161GgAtgGt44AY.1090.002959
ORF1ab/nsp4161D161DgaTgaC44AY.29.10.000882
ORF1ab/nsp4161D161GgAtgGt44AY.430.000018
ORF1ab/nsp4161D161EgaTgaA44AY.610.000419
ORF1ab/nsp4161D161delGAT---44B.1.1770.000053
ORF1ab/nsp4161D161EgaTgaA330.166667
ORF1ab/nsp4161D161VgAtgTt230.111111
ORF1ab/nsp4161D161IGAtATt230.111111
ORF1ab/nsp4161D161VgATgTA130.055556
ORF1ab/nsp4161D161IGATATA130.055556
ORF1ab/nsp4161D161KGaTAaG23All0
ORF1ab/nsp4161D161LGAtCTt23All0
ORF1ab/nsp4161D161del1gAtg-t13All0
ORF1ab/nsp4161D161del1gaTga-13All0
ORF1ab/nsp4161D161KGaTAaA13All0
ORF1ab/nsp4161D161LGATTTG13All0
ORF1ab/nsp4161D161del1Gat-at13All0
ORF1ab/nsp4161D161AgAtgCt33AY.1030.000019
ORF1ab/nsp4161D161YGatTat33AY.40.000005
ORF1ab/nsp4161D161delGAT---33AY.4.50.000322
ORF1ab/nsp4161D161GgAtgGt33AZ.20.002463
ORF1ab/nsp4161D161NGatAat33B.1.1.1530.003286
ORF1ab/nsp4161D161DgaTgaC33B.1.1.2160.002671
ORF1ab/nsp4161D161GgAtgGt33B.1.1.3170.001235
ORF1ab/nsp4161D161VgAtgTt33B.1.1.70.000003
ORF1ab/nsp4161D161delGAT---33B.1.177.630.008108
ORF1ab/nsp4161D161NGatAat33B.1.2210.000213
ORF1ab/nsp4161D161DgaTgaC33B.1.4700.004213
ORF1ab/nsp4161D161delGAT---33B.1.617.20.000011
ORF1ab/nsp4161D161DgaTgaC33P.10.000047
ORF1ab/nsp4161D161NGatAat220.111111
ORF1ab/nsp4161D161PGAtCCt220.111111
ORF1ab/nsp4161D161HGatCat220.111111
ORF1ab/nsp4161D161LGAtCTt220.111111
ORF1ab/nsp4161D161SGAtAGt22All0
ORF1ab/nsp4161D161PGAtCCt22All0
ORF1ab/nsp4161D161AgAtgCt22AY.1020.000053
ORF1ab/nsp4161D161DgaTgaC22AY.1090.001479
ORF1ab/nsp4161D161DgaTgaC22AY.1110.000366
ORF1ab/nsp4161D161delGAT---22AY.1200.000074
ORF1ab/nsp4161D161DgaTgaC22AY.1200.000074
ORF1ab/nsp4161D161DgaTgaC22AY.200.000078
ORF1ab/nsp4161D161delGAT---22AY.250.000012
ORF1ab/nsp4161D161EgaTgaG12AY.250.000006
ORF1ab/nsp4161D161EgaTgaA12AY.250.000006
ORF1ab/nsp4161D161GgAtgGt22AY.260.000057
ORF1ab/nsp4161D161EgaTgaG22AY.40.000003
ORF1ab/nsp4161D161delGAT---22AY.40.000003
ORF1ab/nsp4161D161DgaTgaC22AY.4.20.000043
ORF1ab/nsp4161D161NGatAat22AY.430.000009
ORF1ab/nsp4161D161NGatAat22AY.440.000012
ORF1ab/nsp4161D161EgaTgaG12AY.670.000464
ORF1ab/nsp4161D161GgATgGG12AY.670.000464
ORF1ab/nsp4161D161EgaTgaA12AY.670.000464
ORF1ab/nsp4161D161GgAtgGt12AY.670.000464
ORF1ab/nsp4161D161GgAtgGt22AY.9.10.000167
ORF1ab/nsp4161D161NGatAat22AY.99.20.000184
ORF1ab/nsp4161D161delGAT---22B.10.000018
ORF1ab/nsp4161D161YGatTat22B.10.000018
ORF1ab/nsp4161D161GgAtgGt22B.10.000018
ORF1ab/nsp4161D161NGatAat22B.1.10.000036
ORF1ab/nsp4161D161AgAtgCt22B.1.1.2840.000215
ORF1ab/nsp4161D161AgAtgCt22B.1.1.4480.004065
ORF1ab/nsp4161D161AgAtgCt22B.1.1.70.000002
ORF1ab/nsp4161D161DgaTgaC22B.1.1180.013423
ORF1ab/nsp4161D161NGatAat22B.1.1600.000062
ORF1ab/nsp4161D161AgAtgCt22B.1.1600.000062
ORF1ab/nsp4161D161GgAtgGt22B.1.1770.000026
ORF1ab/nsp4161D161delGAT---22B.1.177.180.00232
ORF1ab/nsp4161D161delGAT---22B.1.177.870.001456
ORF1ab/nsp4161D161delGAT---22B.1.20.000018
ORF1ab/nsp4161D161NGatAat22B.1.20.000018
ORF1ab/nsp4161D161DgaTgaC22B.1.3510.000059
ORF1ab/nsp4161D161AgAtgCt22B.1.4290.000047
ORF1ab/nsp4161D161GgAtgGt22B.1.4620.014493
ORF1ab/nsp4161D161DgaTgaC22B.1.5260.000047
ORF1ab/nsp4161D161GgAtgGt22B.1.5260.000047
ORF1ab/nsp4161D161YGatTat22B.1.617.20.000008
ORF1ab/nsp4161D161GgAtgGt22B.1.6210.000177
ORF1ab/nsp4161D161DgaTgaC22B.40.004415
ORF1ab/nsp4161D161DgaTgaC22B.4.50.02381
ORF1ab/nsp4161D161GgAtgGt22P.30.00319
ORF1ab/nsp4161D161KGaTAaA110.055556
ORF1ab/nsp4161D161DgaTgaC11AE.50.018519
ORF1ab/nsp4161D161RGATAGG11All0
ORF1ab/nsp4161D161del2GAt--t11All0
ORF1ab/nsp4161D161TGATACC11All0
ORF1ab/nsp4161D161AgAtgCt11AY.1000.000046
ORF1ab/nsp4161D161GgAtgGt11AY.1020.000027
ORF1ab/nsp4161D161YGatTat11AY.1020.000027
ORF1ab/nsp4161D161NGatAat11AY.1030.000006
ORF1ab/nsp4161D161DgaTgaC11AY.1070.000466
ORF1ab/nsp4161D161delGAT---11AY.1110.000183
ORF1ab/nsp4161D161GgAtgGt11AY.1130.000142
ORF1ab/nsp4161D161DgaTgaC11AY.1140.000231
ORF1ab/nsp4161D161GgAtgGt11AY.1160.000287
ORF1ab/nsp4161D161NGatAat11AY.116.10.000311
ORF1ab/nsp4161D161GgAtgGt11AY.1170.000085
ORF1ab/nsp4161D161GgAtgGt11AY.1190.000035
ORF1ab/nsp4161D161DgaTgaC11AY.1210.000135
ORF1ab/nsp4161D161DgaTgaC11AY.190.00114
ORF1ab/nsp4161D161NGatAat11AY.200.000039
ORF1ab/nsp4161D161AgAtgCt11AY.250.000006
ORF1ab/nsp4161D161YGatTat11AY.290.000016
ORF1ab/nsp4161D161GgAtgGt11AY.320.000532
ORF1ab/nsp4161D161GgAtgGt11AY.390.000025
ORF1ab/nsp4161D161EgaTgaG11AY.390.000025
ORF1ab/nsp4161D161DgaTgaC11AY.390.000025
ORF1ab/nsp4161D161YGatTat11AY.39.10.00004
ORF1ab/nsp4161D161DgaTgaC11AY.4.2.10.000149
ORF1ab/nsp4161D161NGatAat11AY.4.50.000107
ORF1ab/nsp4161D161HGatCat11AY.430.000004
ORF1ab/nsp4161D161DgaTgaC11AY.430.000004
ORF1ab/nsp4161D161YGatTat11AY.430.000004
ORF1ab/nsp4161D161YGatTat11AY.440.000006
ORF1ab/nsp4161D161SGAtAGt11AY.440.000006
ORF1ab/nsp4161D161AgAtgCt11AY.460.000104
ORF1ab/nsp4161D161EgaTgaA11AY.460.000104
ORF1ab/nsp4161D161GgAtgGt11AY.470.000031
ORF1ab/nsp4161D161TGATACC11AY.50.000021
ORF1ab/nsp4161D161AgAtgCt11AY.50.000021
ORF1ab/nsp4161D161delGAT---11AY.5.30.000337
ORF1ab/nsp4161D161YGatTat11AY.580.000907
ORF1ab/nsp4161D161GgAtgGt11AY.590.00053
ORF1ab/nsp4161D161NGatAat11AY.60.000041
ORF1ab/nsp4161D161delGAT---11AY.60.000041
ORF1ab/nsp4161D161DgaTgaC11AY.610.000105
ORF1ab/nsp4161D161KGaTAaG11AY.670.000464
ORF1ab/nsp4161D161SGAtAGt11AY.670.000464
ORF1ab/nsp4161D161RGATAGG11AY.670.000464
ORF1ab/nsp4161D161NGatAat11AY.670.000464
ORF1ab/nsp4161D161IGATATA11AY.670.000464
ORF1ab/nsp4161D161delGAT---11AY.720.001361
ORF1ab/nsp4161D161DgaTgaC11AY.750.000056
ORF1ab/nsp4161D161delGAT---11AY.90.000068
ORF1ab/nsp4161D161GgAtgGt11AY.9.20.000037
ORF1ab/nsp4161D161delGAT---11AY.950.000761
ORF1ab/nsp4161D161GgAtgGt11AY.98.10.000048
ORF1ab/nsp4161D161delGAT---11AY.990.001049
ORF1ab/nsp4161D161NGatAat11B0.000128
ORF1ab/nsp4161D161NGatAat11B.10.000009
ORF1ab/nsp4161D161HGatCat11B.10.000009
ORF1ab/nsp4161D161EgaTgaA11B.1.10.000018
ORF1ab/nsp4161D161delGAT---11B.1.10.000018
ORF1ab/nsp4161D161AgAtgCt11B.1.10.000018
ORF1ab/nsp4161D161GgAtgGt11B.1.10.000018
ORF1ab/nsp4161D161del1gaTga-11B.1.10.000018
ORF1ab/nsp4161D161delGAT---11B.1.1.1370.0125
ORF1ab/nsp4161D161del2GAt--t11B.1.1.2360.006897
ORF1ab/nsp4161D161NGatAat11B.1.1.2370.005405
ORF1ab/nsp4161D161DgaTgaC11B.1.1.2430.004082
ORF1ab/nsp4161D161DgaTgaC11B.1.1.250.000569
ORF1ab/nsp4161D161delGAT---11B.1.1.280.000311
ORF1ab/nsp4161D161GgAtgGt11B.1.1.3260.001761
ORF1ab/nsp4161D161DgaTgaC11B.1.1.3980.003226
ORF1ab/nsp4161D161DgaTgaC11B.1.1.4200.001006
ORF1ab/nsp4161D161DgaTgaC11B.1.1.4340.000349
ORF1ab/nsp4161D161GgAtgGt11B.1.1.5190.00004
ORF1ab/nsp4161D161DgaTgaC11B.1.1.5190.00004
ORF1ab/nsp4161D161YGatTat11B.1.1.70.000001
ORF1ab/nsp4161D161YGatTat11B.1.1.700.000341
ORF1ab/nsp4161D161GgAtgGt11B.1.110.30.000718
ORF1ab/nsp4161D161YGatTat11B.1.160.160.000929
ORF1ab/nsp4161D161YGatTat11B.1.160.320.004292
ORF1ab/nsp4161D161VgAtgTt11B.1.1770.000013
ORF1ab/nsp4161D161EgaTgaG11B.1.1770.000013
ORF1ab/nsp4161D161YGatTat11B.1.1770.000013
ORF1ab/nsp4161D161NGatAat11B.1.1770.000013
ORF1ab/nsp4161D161delGAT---11B.1.177.100.000878
ORF1ab/nsp4161D161NGatAat11B.1.177.210.000076
ORF1ab/nsp4161D161delGAT---11B.1.177.40.000211
ORF1ab/nsp4161D161delGAT---11B.1.177.480.003125
ORF1ab/nsp4161D161DgaTgaC11B.1.177.770.000726
ORF1ab/nsp4161D161delGAT---11B.1.177.810.000189
ORF1ab/nsp4161D161HGatCat11B.1.20.000009
ORF1ab/nsp4161D161KGaTAaG11B.1.20.000009
ORF1ab/nsp4161D161AgAtgCt11B.1.20.000009
ORF1ab/nsp4161D161del1Gat-at11B.1.20.000009
ORF1ab/nsp4161D161DgaTgaC11B.1.20.000009
ORF1ab/nsp4161D161YGatTat11B.1.2210.000071
ORF1ab/nsp4161D161NGatAat11B.1.221.30.000833
ORF1ab/nsp4161D161NGatAat11B.1.221.40.004167
ORF1ab/nsp4161D161EgaTgaG11B.1.2410.000812
ORF1ab/nsp4161D161delGAT---11B.1.2420.018868
ORF1ab/nsp4161D161DgaTgaC11B.1.258.140.00098
ORF1ab/nsp4161D161delGAT---11B.1.258.30.001675
ORF1ab/nsp4161D161DgaTgaC11B.1.3110.000275
ORF1ab/nsp4161D161EgaTgaA11B.1.3510.00003
ORF1ab/nsp4161D161delGAT---11B.1.36.180.00042
ORF1ab/nsp4161D161delGAT---11B.1.36.380.001642
ORF1ab/nsp4161D161DgaTgaC11B.1.3610.001289
ORF1ab/nsp4161D161DgaTgaC11B.1.3690.000285
ORF1ab/nsp4161D161EgaTgaG11B.1.400.10.015152
ORF1ab/nsp4161D161GgAtgGt11B.1.4090.000781
ORF1ab/nsp4161D161EgaTgaA11B.1.4150.014286
ORF1ab/nsp4161D161GgAtgGt11B.1.4270.00005
ORF1ab/nsp4161D161DgaTgaC11B.1.4560.003268
ORF1ab/nsp4161D161DgaTgaC11B.1.5250.000113
ORF1ab/nsp4161D161NGatAat11B.1.5610.000397
ORF1ab/nsp4161D161DgaTgaC11B.1.5640.000426
ORF1ab/nsp4161D161delGAT---11B.1.5770.000687
ORF1ab/nsp4161D161GgAtgGt11B.1.5810.009434
ORF1ab/nsp4161D161DgaTgaC11B.1.5960.000087
ORF1ab/nsp4161D161YGatTat11B.1.617.10.000129
ORF1ab/nsp4161D161del1gAtg-t11B.1.617.20.000004
ORF1ab/nsp4161D161NGatAat11B.1.617.20.000004
ORF1ab/nsp4161D161AgAtgCt11B.1.617.20.000004
ORF1ab/nsp4161D161HGatCat11B.1.6210.000089
ORF1ab/nsp4161D161delGAT---11B.150.017544
ORF1ab/nsp4161D161LGATTTG11B.60.00091
ORF1ab/nsp4161D161YGatTat11B.60.00091
ORF1ab/nsp4161D161GgAtgGt11B.60.00091
ORF1ab/nsp4161D161DgaTgaC11C.10.002392
ORF1ab/nsp4161D161EgaTgaG11C.350.000774
ORF1ab/nsp4161D161DgaTgaC11C.370.000116
ORF1ab/nsp4161D161DgaTgaC11D.20.000075
ORF1ab/nsp4161D161VgAtgTt11D.20.000075
ORF1ab/nsp4161D161NGatAat11N.30.005814
ORF1ab/nsp4161D161AgAtgCt11P.10.000016
ORF1ab/nsp4161D161delGAT---11P.1.10.000318
ORF1ab/nsp4161D161DgaTgaC11P.1.120.000484
ORF1ab/nsp4161D161DgaTgaC11P.1.140.000048
ORF1ab/nsp4161D161delGAT---11Q.10.000126
ORF1ab/nsp4161D161delGAT---11Q.20.000613