CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 147 | T147I | T2910I | nonsyn | aCa | aTa | 3770 | 3767 | 0.999204 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147I | T2910I | nonsyn | aCA | aTC | 3770 | 3 | 0.000795756 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147T | T2910T | syn | acA | acG | 306 | 226 | 0.738562 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147T | T2910T | syn | acA | acC | 306 | 61 | 0.199346 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147T | T2910T | syn | acA | acT | 306 | 19 | 0.0620915 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147del | T2910del | del | ACA | --- | 115 | 115 | 1 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147A | T2910A | nonsyn | Aca | Gca | 104 | 104 | 1 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147K | T2910K | nonsyn | aCa | aAa | 30 | 30 | 1 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147del2 | T2910del2 | del | ACa | --a | 3 | 3 | 1 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147S | T2910S | nonsyn | Aca | Tca | 3 | 3 | 1 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147R | T2910R | nonsyn | aCa | aGa | 1 | 1 | 1 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147del1 | T2910del1 | del | acA | ac- | 1 | 1 | 1 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147L | T2910L | nonsyn | ACA | CTG | 1 | 1 | 1 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147P | T2910P | nonsyn | Aca | Cca | 1 | 1 | 1 | 8993-8995 |
ORF1ab/nsp4 | 147 | T147Q | T2910Q | nonsyn | ACA | CAG | 1 | 1 | 1 | 8993-8995 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 3767 | 3770 | All | 0.00072 |
ORF1ab/nsp4 | 147 | T147I | aCA | aTC | 3 | 3770 | All | 0.000001 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2238 | 2238 | B.1.1.7 | 0.002004 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 608 | 608 | AY.99.1 | 0.944099 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 226 | 306 | All | 0.000043 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 61 | 306 | All | 0.000012 |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 19 | 306 | All | 0.000004 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 115 | 115 | All | 0.000022 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 106 | 106 | AY.4 | 0.000165 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 105 | 105 | Q.4 | 0.047749 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 104 | 104 | All | 0.00002 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 67 | 67 | AY.44 | 0.000408 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 53 | 53 | AY.46 | 0.005516 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 53 | 53 | B.1.427 | 0.002676 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 51 | 51 | AY.25 | 0.000307 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 50 | 50 | B.1.2 | 0.00044 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 50 | 50 | B.1.617.2 | 0.000188 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 47 | 47 | B.1.1.7 | 0.000042 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 33 | 44 | B.1.1.7 | 0.00003 |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 9 | 44 | B.1.1.7 | 0.000008 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 2 | 44 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 36 | 36 | AY.103 | 0.000224 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 36 | 36 | B.1.429 | 0.000847 |
ORF1ab/nsp4 | 147 | T147K | aCa | aAa | 30 | 30 | All | 0.000006 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 30 | 30 | P.1 | 0.000473 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 23 | 23 | AY.3 | 0.000229 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 21 | 22 | B.1.429 | 0.000494 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 22 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 21 | 21 | AY.4.2 | 0.000455 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 21 | 21 | AY.42 | 0.000845 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 19 | 19 | B.1 | 0.000174 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 17 | 19 | B.1.2 | 0.00015 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 2 | 19 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 147 | T147K | aCa | aAa | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 17 | 17 | B.1.517 | 0.007259 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 14 | 16 | AY.43 | 0.000062 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 2 | 16 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 14 | 14 | AY.116 | 0.004015 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 14 | 14 | B.1.627 | 0.028283 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 11 | 12 | B.1.1 | 0.0002 |
ORF1ab/nsp4 | 147 | T147I | aCA | aTC | 1 | 12 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 11 | 11 | AY.39.1 | 0.000436 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 11 | 11 | B.1.575 | 0.003337 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 9 | 10 | AY.4 | 0.000014 |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 1 | 10 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 9 | 9 | AY.99 | 0.009444 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 9 | 9 | B.1.467 | 0.36 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 9 | 9 | B.1.575 | 0.002731 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 9 | 9 | P.1.14 | 0.00043 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 9 | 9 | P.1.16 | 0.003367 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 8 | 8 | AY.39.1 | 0.000317 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 3 | 7 | B.1 | 0.000027 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 3 | 7 | B.1 | 0.000027 |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 1 | 7 | B.1 | 0.000009 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp4 | 147 | T147K | aCa | aAa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 6 | 6 | B.1.499 | 0.006303 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 5 | 5 | P.1.15 | 0.001162 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 5 | 5 | W.1 | 0.043478 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 3 | 4 | AY.43 | 0.000013 |
ORF1ab/nsp4 | 147 | T147I | aCA | aTC | 1 | 4 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 3 | 4 | AY.47 | 0.000093 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 4 | AY.47 | 0.000031 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 4 | 4 | B.1.1.93 | 0.102564 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 4 | 4 | B.1.397 | 0.019417 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp4 | 147 | T147S | Aca | Tca | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 147 | T147del2 | ACa | --a | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 2 | 3 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 1 | 3 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 3 | 3 | B.1.177.54 | 0.001819 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 3 | 3 | B.1.177.63 | 0.008108 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 3 | 3 | B.1.36.29 | 0.001552 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp4 | 147 | T147K | aCa | aAa | 2 | 2 | AY.99.1 | 0.003106 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 147 | T147K | aCa | aAa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | B.1.177.83 | 0.002963 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 2 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 1 | 2 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | B.1.606 | 0.012048 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp4 | 147 | T147Q | ACA | CAG | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 147 | T147R | aCa | aGa | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 147 | T147del1 | acA | ac- | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 147 | T147L | ACA | CTG | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 147 | T147P | Aca | Cca | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp4 | 147 | T147K | aCa | aAa | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 147 | T147del2 | ACa | --a | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 147 | T147L | ACA | CTG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp4 | 147 | T147I | aCA | aTC | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.1.266 | 0.012195 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp4 | 147 | T147Q | ACA | CAG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 147 | T147del2 | ACa | --a | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 147 | T147del1 | acA | ac- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 147 | T147K | aCa | aAa | 1 | 1 | B.1.177.40 | 0.005155 |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 147 | T147del2 | ACa | --a | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 147 | T147T | acA | acT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 147 | T147S | Aca | Tca | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 147 | T147S | Aca | Tca | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 147 | T147S | Aca | Tca | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 147 | T147P | Aca | Cca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp4 | 147 | T147A | Aca | Gca | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp4 | 147 | T147T | acA | acC | 1 | 1 | C.31 | 0.017857 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 147 | T147R | aCa | aGa | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp4 | 147 | T147I | aCa | aTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp4 | 147 | T147del | ACA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp4 | 147 | T147T | acA | acG | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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