CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 147

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4147T147IT2910InonsynaCaaTa377037670.9992048993-8995
ORF1ab/nsp4147T147IT2910InonsynaCAaTC377030.0007957568993-8995
ORF1ab/nsp4147T147TT2910TsynacAacG3062260.7385628993-8995
ORF1ab/nsp4147T147TT2910TsynacAacC306610.1993468993-8995
ORF1ab/nsp4147T147TT2910TsynacAacT306190.06209158993-8995
ORF1ab/nsp4147T147delT2910deldelACA---11511518993-8995
ORF1ab/nsp4147T147AT2910AnonsynAcaGca10410418993-8995
ORF1ab/nsp4147T147KT2910KnonsynaCaaAa303018993-8995
ORF1ab/nsp4147T147del2T2910del2delACa--a3318993-8995
ORF1ab/nsp4147T147ST2910SnonsynAcaTca3318993-8995
ORF1ab/nsp4147T147RT2910RnonsynaCaaGa1118993-8995
ORF1ab/nsp4147T147del1T2910del1delacAac-1118993-8995
ORF1ab/nsp4147T147LT2910LnonsynACACTG1118993-8995
ORF1ab/nsp4147T147PT2910PnonsynAcaCca1118993-8995
ORF1ab/nsp4147T147QT2910QnonsynACACAG1118993-8995

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4147T147IaCaaTa37673770All0.00072
ORF1ab/nsp4147T147IaCAaTC33770All0.000001
ORF1ab/nsp4147T147IaCaaTa22382238B.1.1.70.002004
ORF1ab/nsp4147T147IaCaaTa608608AY.99.10.944099
ORF1ab/nsp4147T147TacAacG226306All0.000043
ORF1ab/nsp4147T147TacAacC61306All0.000012
ORF1ab/nsp4147T147TacAacT19306All0.000004
ORF1ab/nsp4147T147delACA---115115All0.000022
ORF1ab/nsp4147T147IaCaaTa106106AY.40.000165
ORF1ab/nsp4147T147IaCaaTa105105Q.40.047749
ORF1ab/nsp4147T147AAcaGca104104All0.00002
ORF1ab/nsp4147T147IaCaaTa6767AY.440.000408
ORF1ab/nsp4147T147IaCaaTa5353AY.460.005516
ORF1ab/nsp4147T147AAcaGca5353B.1.4270.002676
ORF1ab/nsp4147T147IaCaaTa5151AY.250.000307
ORF1ab/nsp4147T147IaCaaTa5050B.1.20.00044
ORF1ab/nsp4147T147IaCaaTa5050B.1.617.20.000188
ORF1ab/nsp4147T147delACA---4747B.1.1.70.000042
ORF1ab/nsp4147T147TacAacG3344B.1.1.70.00003
ORF1ab/nsp4147T147TacAacT944B.1.1.70.000008
ORF1ab/nsp4147T147TacAacC244B.1.1.70.000002
ORF1ab/nsp4147T147IaCaaTa3636AY.1030.000224
ORF1ab/nsp4147T147IaCaaTa3636B.1.4290.000847
ORF1ab/nsp4147T147KaCaaAa3030All0.000006
ORF1ab/nsp4147T147IaCaaTa3030P.10.000473
ORF1ab/nsp4147T147IaCaaTa2323AY.30.000229
ORF1ab/nsp4147T147TacAacC2122B.1.4290.000494
ORF1ab/nsp4147T147TacAacG122B.1.4290.000024
ORF1ab/nsp4147T147IaCaaTa2121AY.4.20.000455
ORF1ab/nsp4147T147IaCaaTa2121AY.420.000845
ORF1ab/nsp4147T147IaCaaTa1919B.10.000174
ORF1ab/nsp4147T147TacAacC1719B.1.20.00015
ORF1ab/nsp4147T147TacAacG219B.1.20.000018
ORF1ab/nsp4147T147KaCaaAa1818AY.40.000028
ORF1ab/nsp4147T147IaCaaTa1717B.1.1770.000224
ORF1ab/nsp4147T147IaCaaTa1717B.1.5170.007259
ORF1ab/nsp4147T147TacAacG1416AY.430.000062
ORF1ab/nsp4147T147TacAacC216AY.430.000009
ORF1ab/nsp4147T147TacAacG1616B.1.1770.000211
ORF1ab/nsp4147T147TacAacG1414AY.1160.004015
ORF1ab/nsp4147T147IaCaaTa1414B.1.6270.028283
ORF1ab/nsp4147T147TacAacG1212AY.200.000466
ORF1ab/nsp4147T147IaCaaTa1112B.1.10.0002
ORF1ab/nsp4147T147IaCAaTC112B.1.10.000018
ORF1ab/nsp4147T147IaCaaTa1111AY.39.10.000436
ORF1ab/nsp4147T147TacAacG1111B.1.5750.003337
ORF1ab/nsp4147T147TacAacG910AY.40.000014
ORF1ab/nsp4147T147TacAacT110AY.40.000002
ORF1ab/nsp4147T147TacAacG1010B.1.1600.000312
ORF1ab/nsp4147T147IaCaaTa99AY.990.009444
ORF1ab/nsp4147T147AAcaGca99B.1.4670.36
ORF1ab/nsp4147T147IaCaaTa99B.1.5750.002731
ORF1ab/nsp4147T147TacAacG99P.1.140.00043
ORF1ab/nsp4147T147IaCaaTa99P.1.160.003367
ORF1ab/nsp4147T147TacAacG88AY.1030.00005
ORF1ab/nsp4147T147TacAacG88AY.39.10.000317
ORF1ab/nsp4147T147delACA---88AY.40.000012
ORF1ab/nsp4147T147delACA---88AY.430.000035
ORF1ab/nsp4147T147AAcaGca88B.1.1.70.000007
ORF1ab/nsp4147T147TacAacC37B.10.000027
ORF1ab/nsp4147T147TacAacG37B.10.000027
ORF1ab/nsp4147T147TacAacT17B.10.000009
ORF1ab/nsp4147T147TacAacC77B.1.4270.000353
ORF1ab/nsp4147T147IaCaaTa77B.1.4270.000353
ORF1ab/nsp4147T147IaCaaTa66AY.750.000336
ORF1ab/nsp4147T147KaCaaAa66B.1.1.70.000005
ORF1ab/nsp4147T147IaCaaTa66B.1.3510.000178
ORF1ab/nsp4147T147AAcaGca66B.1.4990.006303
ORF1ab/nsp4147T147TacAacG55A.2.50.002495
ORF1ab/nsp4147T147IaCaaTa55AY.1190.000177
ORF1ab/nsp4147T147TacAacG55AY.4.20.000108
ORF1ab/nsp4147T147TacAacG55AY.9.20.000184
ORF1ab/nsp4147T147delACA---55B.1.1770.000066
ORF1ab/nsp4147T147IaCaaTa55P.1.150.001162
ORF1ab/nsp4147T147AAcaGca55W.10.043478
ORF1ab/nsp4147T147AAcaGca44AY.1190.000141
ORF1ab/nsp4147T147IaCaaTa44AY.200.000155
ORF1ab/nsp4147T147TacAacG44AY.30.00004
ORF1ab/nsp4147T147delACA---44AY.4.50.00043
ORF1ab/nsp4147T147IaCaaTa34AY.430.000013
ORF1ab/nsp4147T147IaCAaTC14AY.430.000004
ORF1ab/nsp4147T147TacAacC34AY.470.000093
ORF1ab/nsp4147T147TacAacG14AY.470.000031
ORF1ab/nsp4147T147IaCaaTa44AY.880.003537
ORF1ab/nsp4147T147TacAacG44B.1.1.280.001245
ORF1ab/nsp4147T147TacAacG44B.1.1.930.102564
ORF1ab/nsp4147T147IaCaaTa44B.1.2580.000266
ORF1ab/nsp4147T147TacAacG44B.1.3970.019417
ORF1ab/nsp4147T147IaCaaTa44B.1.5960.000349
ORF1ab/nsp4147T147TacAacG44B.1.617.20.000015
ORF1ab/nsp4147T147IaCaaTa44B.1.6370.000292
ORF1ab/nsp4147T147SAcaTca33All0.000001
ORF1ab/nsp4147T147del2ACa--a33All0.000001
ORF1ab/nsp4147T147IaCaaTa33AY.1170.000254
ORF1ab/nsp4147T147IaCaaTa33AY.360.000445
ORF1ab/nsp4147T147IaCaaTa33AY.390.000074
ORF1ab/nsp4147T147TacAacG23AY.440.000012
ORF1ab/nsp4147T147TacAacT13AY.440.000006
ORF1ab/nsp4147T147IaCaaTa33AY.690.00056
ORF1ab/nsp4147T147TacAacG23B.1.10.000036
ORF1ab/nsp4147T147TacAacT13B.1.10.000018
ORF1ab/nsp4147T147IaCaaTa33B.1.1.2140.000166
ORF1ab/nsp4147T147TacAacG33B.1.1.2160.002671
ORF1ab/nsp4147T147IaCaaTa33B.1.1.2840.000322
ORF1ab/nsp4147T147IaCaaTa33B.1.177.540.001819
ORF1ab/nsp4147T147delACA---33B.1.177.630.008108
ORF1ab/nsp4147T147TacAacG33B.1.36.290.001552
ORF1ab/nsp4147T147TacAacG33B.1.438.10.000322
ORF1ab/nsp4147T147delACA---33B.1.617.20.000011
ORF1ab/nsp4147T147AAcaGca33C.370.000348
ORF1ab/nsp4147T147delACA---220.111111
ORF1ab/nsp4147T147TacAacT220.111111
ORF1ab/nsp4147T147IaCaaTa22AY.1130.000285
ORF1ab/nsp4147T147delACA---22AY.1200.000074
ORF1ab/nsp4147T147IaCaaTa22AY.230.000139
ORF1ab/nsp4147T147TacAacG22AY.250.000012
ORF1ab/nsp4147T147IaCaaTa22AY.3.10.000171
ORF1ab/nsp4147T147TacAacG22AY.4.2.10.000298
ORF1ab/nsp4147T147IaCaaTa22AY.4.50.000215
ORF1ab/nsp4147T147AAcaGca22AY.440.000012
ORF1ab/nsp4147T147TacAacG22AY.50.000041
ORF1ab/nsp4147T147IaCaaTa22AY.50.000041
ORF1ab/nsp4147T147IaCaaTa22AY.5.30.000675
ORF1ab/nsp4147T147IaCaaTa22AY.700.000417
ORF1ab/nsp4147T147AAcaGca22AY.750.000112
ORF1ab/nsp4147T147IaCaaTa22AY.850.000854
ORF1ab/nsp4147T147KaCaaAa22AY.99.10.003106
ORF1ab/nsp4147T147IaCaaTa22AZ.20.001642
ORF1ab/nsp4147T147AAcaGca22B.10.000018
ORF1ab/nsp4147T147KaCaaAa22B.1.10.000036
ORF1ab/nsp4147T147delACA---22B.1.1.370.000386
ORF1ab/nsp4147T147IaCaaTa22B.1.1.390.001019
ORF1ab/nsp4147T147IaCaaTa22B.1.1.5190.000079
ORF1ab/nsp4147T147delACA---22B.1.177.180.00232
ORF1ab/nsp4147T147TacAacG22B.1.177.440.001038
ORF1ab/nsp4147T147IaCaaTa22B.1.177.830.002963
ORF1ab/nsp4147T147delACA---22B.1.177.870.001456
ORF1ab/nsp4147T147IaCaaTa22B.1.2410.001623
ORF1ab/nsp4147T147IaCaaTa22B.1.4000.000858
ORF1ab/nsp4147T147AAcaGca22B.1.4290.000047
ORF1ab/nsp4147T147IaCaaTa22B.1.5260.000047
ORF1ab/nsp4147T147TacAacG12B.1.5820.000491
ORF1ab/nsp4147T147TacAacT12B.1.5820.000491
ORF1ab/nsp4147T147IaCaaTa22B.1.6060.012048
ORF1ab/nsp4147T147IaCaaTa22B.1.6210.000177
ORF1ab/nsp4147T147IaCaaTa22R.10.00018
ORF1ab/nsp4147T147IaCaaTa11A0.000387
ORF1ab/nsp4147T147IaCaaTa11AE.80.000489
ORF1ab/nsp4147T147QACACAG11All0
ORF1ab/nsp4147T147RaCaaGa11All0
ORF1ab/nsp4147T147del1acAac-11All0
ORF1ab/nsp4147T147LACACTG11All0
ORF1ab/nsp4147T147PAcaCca11All0
ORF1ab/nsp4147T147IaCaaTa11AY.1000.000046
ORF1ab/nsp4147T147AAcaGca11AY.1030.000006
ORF1ab/nsp4147T147IaCaaTa11AY.1050.000643
ORF1ab/nsp4147T147IaCaaTa11AY.1080.001103
ORF1ab/nsp4147T147IaCaaTa11AY.1110.000183
ORF1ab/nsp4147T147delACA---11AY.1110.000183
ORF1ab/nsp4147T147IaCaaTa11AY.116.10.000311
ORF1ab/nsp4147T147IaCaaTa11AY.1200.000037
ORF1ab/nsp4147T147IaCaaTa11AY.120.10.000321
ORF1ab/nsp4147T147IaCaaTa11AY.130.000161
ORF1ab/nsp4147T147TacAacG11AY.140.000088
ORF1ab/nsp4147T147AAcaGca11AY.160.00038
ORF1ab/nsp4147T147delACA---11AY.190.00114
ORF1ab/nsp4147T147delACA---11AY.250.000006
ORF1ab/nsp4147T147IaCaaTa11AY.260.000028
ORF1ab/nsp4147T147IaCaaTa11AY.290.000016
ORF1ab/nsp4147T147TacAacG11AY.340.000097
ORF1ab/nsp4147T147KaCaaAa11AY.360.000148
ORF1ab/nsp4147T147IaCaaTa11AY.370.000316
ORF1ab/nsp4147T147AAcaGca11AY.40.000002
ORF1ab/nsp4147T147del2ACa--a11AY.40.000002
ORF1ab/nsp4147T147LACACTG11AY.430.000004
ORF1ab/nsp4147T147TacAacG11AY.450.000122
ORF1ab/nsp4147T147IaCaaTa11AY.450.000122
ORF1ab/nsp4147T147TacAacG11AY.460.000104
ORF1ab/nsp4147T147AAcaGca11AY.46.10.001027
ORF1ab/nsp4147T147IaCaaTa11AY.510.000909
ORF1ab/nsp4147T147IaCaaTa11AY.520.000814
ORF1ab/nsp4147T147delACA---11AY.520.000814
ORF1ab/nsp4147T147TacAacG11AY.530.000288
ORF1ab/nsp4147T147IaCAaTC11AY.670.000464
ORF1ab/nsp4147T147TacAacG11AY.670.000464
ORF1ab/nsp4147T147TacAacT11AY.70.000196
ORF1ab/nsp4147T147delACA---11AY.720.001361
ORF1ab/nsp4147T147delACA---11AY.90.000068
ORF1ab/nsp4147T147IaCaaTa11AY.9.10.000084
ORF1ab/nsp4147T147IaCaaTa11AY.9.20.000037
ORF1ab/nsp4147T147AAcaGca11AY.920.000287
ORF1ab/nsp4147T147IaCaaTa11AY.930.000273
ORF1ab/nsp4147T147delACA---11AY.950.000761
ORF1ab/nsp4147T147delACA---11AY.990.001049
ORF1ab/nsp4147T147delACA---11AY.99.10.001553
ORF1ab/nsp4147T147TacAacG11AY.99.20.000092
ORF1ab/nsp4147T147delACA---11B.10.000009
ORF1ab/nsp4147T147IaCaaTa11B.1.1.100.001115
ORF1ab/nsp4147T147IaCaaTa11B.1.1.2220.000204
ORF1ab/nsp4147T147delACA---11B.1.1.2360.006897
ORF1ab/nsp4147T147IaCaaTa11B.1.1.2660.012195
ORF1ab/nsp4147T147IaCaaTa11B.1.1.2940.001266
ORF1ab/nsp4147T147IaCaaTa11B.1.1.3060.000438
ORF1ab/nsp4147T147delACA---11B.1.1.3110.000358
ORF1ab/nsp4147T147delACA---11B.1.1.390.00051
ORF1ab/nsp4147T147IaCaaTa11B.1.1.4480.002033
ORF1ab/nsp4147T147IaCaaTa11B.1.1.500.000679
ORF1ab/nsp4147T147IaCaaTa11B.1.1.5180.006329
ORF1ab/nsp4147T147QACACAG11B.1.1.70.000001
ORF1ab/nsp4147T147del2ACa--a11B.1.1.70.000001
ORF1ab/nsp4147T147IaCaaTa11B.1.1600.000031
ORF1ab/nsp4147T147AAcaGca11B.1.160.310.008065
ORF1ab/nsp4147T147delACA---11B.1.160.70.002079
ORF1ab/nsp4147T147delACA---11B.1.177.100.000878
ORF1ab/nsp4147T147TacAacG11B.1.177.150.000631
ORF1ab/nsp4147T147del1acAac-11B.1.177.160.000664
ORF1ab/nsp4147T147IaCaaTa11B.1.177.190.001431
ORF1ab/nsp4147T147delACA---11B.1.177.40.000211
ORF1ab/nsp4147T147KaCaaAa11B.1.177.400.005155
ORF1ab/nsp4147T147TacAacT11B.1.177.540.000606
ORF1ab/nsp4147T147del2ACa--a11B.1.177.560.000668
ORF1ab/nsp4147T147TacAacT11B.1.177.560.000668
ORF1ab/nsp4147T147delACA---11B.1.177.690.001484
ORF1ab/nsp4147T147delACA---11B.1.177.760.002494
ORF1ab/nsp4147T147delACA---11B.1.177.810.000189
ORF1ab/nsp4147T147SAcaTca11B.1.177.830.001481
ORF1ab/nsp4147T147IaCaaTa11B.1.177.860.000183
ORF1ab/nsp4147T147TacAacG11B.1.1890.004292
ORF1ab/nsp4147T147delACA---11B.1.20.000009
ORF1ab/nsp4147T147SAcaTca11B.1.20.000009
ORF1ab/nsp4147T147IaCaaTa11B.1.2060.000816
ORF1ab/nsp4147T147IaCaaTa11B.1.214.20.0006
ORF1ab/nsp4147T147IaCaaTa11B.1.2210.000071
ORF1ab/nsp4147T147IaCaaTa11B.1.2340.000132
ORF1ab/nsp4147T147TacAacC11B.1.2340.000132
ORF1ab/nsp4147T147IaCaaTa11B.1.2360.002053
ORF1ab/nsp4147T147delACA---11B.1.2420.018868
ORF1ab/nsp4147T147TacAacC11B.1.2430.00007
ORF1ab/nsp4147T147TacAacG11B.1.2470.014925
ORF1ab/nsp4147T147delACA---11B.1.258.30.001675
ORF1ab/nsp4147T147IaCaaTa11B.1.2810.021739
ORF1ab/nsp4147T147TacAacG11B.1.3510.00003
ORF1ab/nsp4147T147IaCaaTa11B.1.360.000146
ORF1ab/nsp4147T147delACA---11B.1.36.180.00042
ORF1ab/nsp4147T147SAcaTca11B.1.3670.000792
ORF1ab/nsp4147T147delACA---11B.1.4150.014286
ORF1ab/nsp4147T147IaCaaTa11B.1.4280.00102
ORF1ab/nsp4147T147IaCaaTa11B.1.5270.003704
ORF1ab/nsp4147T147TacAacC11B.1.5610.000397
ORF1ab/nsp4147T147delACA---11B.1.5770.000687
ORF1ab/nsp4147T147TacAacC11B.1.5960.000087
ORF1ab/nsp4147T147TacAacC11B.1.5990.00365
ORF1ab/nsp4147T147TacAacG11B.1.6120.002653
ORF1ab/nsp4147T147TacAacG11B.1.617.10.000129
ORF1ab/nsp4147T147PAcaCca11B.1.617.20.000004
ORF1ab/nsp4147T147AAcaGca11B.1.617.20.000004
ORF1ab/nsp4147T147IaCaaTa11B.1.619.10.000641
ORF1ab/nsp4147T147AAcaGca11B.1.6210.000089
ORF1ab/nsp4147T147IaCaaTa11B.1.6280.000352
ORF1ab/nsp4147T147TacAacG11B.1.6310.003367
ORF1ab/nsp4147T147delACA---11B.150.017544
ORF1ab/nsp4147T147IaCaaTa11B.40.002208
ORF1ab/nsp4147T147IaCaaTa11B.6.60.000889
ORF1ab/nsp4147T147TacAacC11C.310.017857
ORF1ab/nsp4147T147TacAacG11C.350.000774
ORF1ab/nsp4147T147RaCaaGa11C.350.000774
ORF1ab/nsp4147T147IaCaaTa11C.370.000116
ORF1ab/nsp4147T147TacAacG11P.10.000016
ORF1ab/nsp4147T147IaCaaTa11P.1.100.000269
ORF1ab/nsp4147T147IaCaaTa11P.1.120.000484
ORF1ab/nsp4147T147IaCaaTa11P.20.000187
ORF1ab/nsp4147T147delACA---11Q.10.000126
ORF1ab/nsp4147T147TacAacG11Q.30.000145
ORF1ab/nsp4147T147TacAacG11R.10.00009