CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 144 | D144D | D2907D | syn | gaC | gaT | 2432137 | 2432137 | 1 | 8984-8986 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2432137 | 2432137 | All | 0.465175 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 642351 | 642351 | AY.4 | 0.99977 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 224929 | 224929 | B.1.617.2 | 0.846951 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 222568 | 222568 | AY.43 | 0.986079 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 164789 | 164789 | AY.25 | 0.991176 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 162049 | 162049 | AY.44 | 0.986353 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 160277 | 160277 | AY.103 | 0.995169 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 100229 | 100229 | AY.3 | 0.996917 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 63375 | 63375 | AY.29 | 0.999653 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 48317 | 48317 | AY.5 | 0.997708 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 46091 | 46091 | AY.4.2 | 0.999653 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 39878 | 39878 | AY.39 | 0.985445 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 37652 | 37652 | AY.102 | 0.998303 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 28230 | 28230 | AY.119 | 0.996752 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 26850 | 26850 | AY.120 | 0.998253 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 25538 | 25538 | AY.20 | 0.992538 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 25088 | 25088 | AY.39.1 | 0.99382 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 24754 | 24754 | AY.42 | 0.995856 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 24301 | 24301 | AY.6 | 0.999465 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 21600 | 21600 | AY.100 | 0.993743 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 20543 | 20543 | AY.98.1 | 0.994915 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 15901 | 15901 | AY.118 | 0.996178 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 14858 | 14858 | AY.33 | 0.992187 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 14020 | 14020 | AY.23 | 0.977889 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 13804 | 13804 | AY.46.6 | 0.996751 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 12438 | 12438 | AY.98 | 0.982542 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 11710 | 11710 | AY.3.1 | 0.99838 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 11674 | 11674 | AY.117 | 0.986646 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 10706 | 10706 | AY.99.2 | 0.986637 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 10289 | 10289 | AY.34 | 0.997673 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 9477 | 9477 | AY.46 | 0.986366 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 9262 | 9262 | AY.4.5 | 0.995593 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 8856 | 8856 | AY.7.1 | 0.998084 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 8569 | 8569 | AY.110 | 0.96563 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 8032 | 8032 | AY.45 | 0.977367 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 7291 | 7291 | AY.121 | 0.986604 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 6972 | 6972 | AY.113 | 0.992738 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 6679 | 6679 | AY.36 | 0.989921 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 6672 | 6672 | AY.4.2.1 | 0.994041 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 6068 | 6068 | AY.46.4 | 0.99819 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5440 | 5440 | AY.111 | 0.996337 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5093 | 5093 | AY.7 | 0.998236 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5040 | 5040 | AY.46.5 | 1 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4534 | 4534 | AY.29.1 | 0.999779 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4296 | 4296 | AY.114 | 0.992836 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3638 | 3638 | AY.93 | 0.993446 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3550 | 3550 | AY.5.4 | 0.982291 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3444 | 3444 | AY.116 | 0.987668 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3377 | 3377 | AY.41 | 0.992651 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3364 | 3364 | B.1.1.7 | 0.003012 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3355 | 3355 | AY.92 | 0.963804 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3203 | 3203 | AY.116.1 | 0.997509 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3132 | 3132 | AY.12 | 0.989886 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3109 | 3109 | AY.120.1 | 0.998074 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2958 | 2958 | AY.106 | 0.990623 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2927 | 2927 | AY.5.3 | 0.987517 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2616 | 2616 | AY.9.2 | 0.096085 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2510 | 2510 | AY.1 | 0.993273 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2439 | 2439 | AY.4.4 | 0.997954 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2395 | 2395 | AY.23.1 | 0.999583 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2287 | 2287 | AY.85 | 0.976933 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2259 | 2259 | AY.84 | 0.988189 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2253 | 2253 | AY.94 | 0.997344 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2140 | 2140 | AY.107 | 0.997204 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2012 | 2012 | AY.101 | 0.986758 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2006 | 2006 | AY.120.2.1 | 0.999502 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1947 | 1947 | AY.34.1 | 0.992861 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1822 | 1822 | AY.32 | 0.970181 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1782 | 1782 | AY.7.2 | 0.996644 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1494 | 1494 | AY.46.2 | 0.949174 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1468 | 1468 | AY.105 | 0.944051 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1380 | 1380 | AY.39.1.1 | 1 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1377 | 1377 | AY.90 | 0.942505 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1355 | 1355 | AY.4.1 | 0.999263 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1346 | 1346 | AY.91 | 0.983199 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1333 | 1333 | AY.109 | 0.985947 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1277 | 1277 | AY.95 | 0.971842 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1178 | 1178 | AY.87 | 0.980849 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1164 | 1164 | AY.4.3 | 0.979798 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1159 | 1159 | AY.86 | 0.961826 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1106 | 1106 | AY.88 | 0.977896 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1069 | 1069 | AY.46.3 | 0.998133 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 958 | 958 | AY.46.1 | 0.983573 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 942 | 942 | AY.99 | 0.988458 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 929 | 929 | AY.47 | 0.028897 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 882 | 882 | AY.80 | 0.995485 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 871 | 871 | AY.75 | 0.048796 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 840 | 840 | AY.77 | 0.947012 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 822 | 822 | AY.79 | 0.995157 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 751 | 751 | AY.108 | 0.828004 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 726 | 726 | AY.120.2 | 0.933162 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 705 | 705 | AY.82 | 0.956581 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 649 | 649 | AY.39.2 | 1 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 640 | 640 | B.1 | 0.005862 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 616 | 616 | AY.73 | 0.409847 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 615 | 615 | AY.99.1 | 0.954969 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 611 | 611 | AY.78 | 0.941448 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 586 | 586 | AY.97 | 0.996599 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 574 | 574 | AY.83 | 0.989655 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 500 | 500 | AY.104 | 0.992063 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 489 | 489 | AY.81 | 0.974104 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 471 | 471 | AY.21 | 0.893738 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 464 | 464 | AY.96 | 0.962656 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 460 | 460 | AY.22 | 0.962343 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 456 | 456 | AY.55 | 0.418349 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 456 | 456 | AY.68 | 0.124829 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 402 | 402 | AY.5.2 | 0.990148 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 391 | 391 | AY.74 | 0.045218 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 349 | 349 | AY.54 | 0.033276 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 295 | 295 | AY.59 | 0.15625 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 285 | 285 | AY.58 | 0.258621 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 283 | 283 | AY.19 | 0.322691 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 265 | 265 | AY.5.1 | 0.996241 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 257 | 257 | AY.75.1 | 0.04634 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 246 | 246 | AY.91.1 | 1 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 221 | 221 | AY.38 | 0.110334 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 219 | 219 | AY.53 | 0.062967 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 206 | 206 | AY.76 | 0.995169 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 203 | 203 | AY.89 | 0.995098 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 195 | 195 | B | 0.024923 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 191 | 191 | AY.115 | 0.994792 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 186 | 186 | AY.52 | 0.151466 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 186 | 186 | AY.69 | 0.034721 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 177 | 177 | AY.62 | 0.077124 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 167 | 167 | AY.64 | 0.099405 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 159 | 159 | AY.10 | 0.084261 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 158 | 158 | AY.67 | 0.073352 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 147 | 147 | AY.37 | 0.04646 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 145 | 145 | AY.56 | 0.232745 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 130 | 130 | AY.16 | 0.049355 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 130 | 130 | AY.63 | 0.05029 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 109 | 109 | AY.57 | 0.071522 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 101 | 101 | AY.13 | 0.016259 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 100 | 100 | AY.40 | 0.096432 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 99 | 99 | B.1.526 | 0.002327 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 98 | 98 | AY.14 | 0.008625 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 96 | 96 | AY.26 | 0.002718 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 90 | 90 | AY.48 | 0.04186 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 89 | 89 | AY.70 | 0.018557 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 81 | 81 | B.1.2 | 0.000713 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 80 | 80 | AY.35 | 0.018644 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 69 | 69 | AY.65 | 0.03678 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 66 | 66 | AY.71 | 0.031354 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 63 | 63 | AY.60 | 0.059099 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 56 | 56 | B.1.1 | 0.001016 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 54 | 54 | B.1.160 | 0.001684 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 52 | 52 | AY.11 | 0.069612 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 41 | 41 | P.1 | 0.000646 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 39 | 39 | AY.50 | 0.031175 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 35 | 35 | AY.61 | 0.003667 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 33 | 33 | AY.49 | 0.105431 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 31 | 31 | B.1.160.18 | 0.226277 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 31 | 31 | B.1.596 | 0.002701 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 30 | 30 | AY.17 | 0.245902 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 30 | 30 | AY.24 | 0.012931 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 29 | 29 | AY.9 | 0.00196 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 27 | 27 | AY.9.1 | 0.002261 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 25 | 25 | AY.30 | 0.009893 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 25 | 25 | AY.51 | 0.022727 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 24 | 24 | AY.16.1 | 0.011278 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 22 | 22 | B.1.617.1 | 0.002837 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 20 | 20 | AY.28 | 0.037807 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 19 | 19 | B.1.351.2 | 0.005749 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 18 | 18 | B.1.160.8 | 0.023196 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 18 | 18 | B.1.177 | 0.000237 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 16 | 16 | B.1.623 | 0.008584 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 15 | 15 | AY.8 | 0.009091 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 14 | 14 | AY.66 | 0.014973 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 13 | 13 | B.1.110.3 | 0.009339 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 12 | 12 | B.1.1.526 | 0.042553 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 11 | 11 | AY.72 | 0.014966 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 10 | 10 | A | 0.00387 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 10 | 10 | B.1.258 | 0.000665 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 10 | 10 | B.1.351 | 0.000297 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 9 | 9 | B.1.214.2 | 0.005396 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 8 | 8 | B.1.1.284 | 0.000859 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 8 | 8 | B.1.628 | 0.002819 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 7 | 7 | AY.27 | 0.000453 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5 | 5 | B.1.1.28 | 0.001556 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5 | 5 | B.1.240 | 0.001078 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5 | 5 | B.1.375 | 0.004098 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5 | 5 | N.5 | 0.008834 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 5 | 5 | P.1.1 | 0.001588 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4 | 4 | AY.2 | 0.001425 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4 | 4 | B.1.1.333 | 0.004306 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4 | 4 | B.1.177.35 | 0.002764 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4 | 4 | B.1.474 | 0.007605 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4 | 4 | B.1.485 | 0.059701 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4 | 4 | B.1.496 | 0.5 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.1.523 | 0.004687 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.177.15 | 0.001893 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.214 | 0.010989 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.335 | 0.030928 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.36 | 0.000438 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.568 | 0.003333 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | B.1.596.1 | 0.028037 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | AY.15 | 0.004444 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.1.53 | 0.027397 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.160.12 | 0.012821 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.241 | 0.001623 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.319 | 0.006098 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.39 | 0.007812 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.433 | 0.00639 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.576 | 0.001813 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.600 | 0.011696 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.604 | 0.034483 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | B.1.629 | 0.026667 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.110 | 0.090909 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.125 | 0.010204 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.158 | 0.02381 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.208 | 0.04 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.36.19 | 0.009259 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.510 | 0.026316 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.581 | 0.009434 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.1.70 | 0.02439 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.29 | 0.003509 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | C.36.3.1 | 0.002717 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | P.1.17.1 | 0.000875 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp4 | 144 | D144D | gaC | gaT | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|