CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 143 | T143T | T2906T | syn | acT | acG | 8374 | 7859 | 0.9385 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143T | T2906T | syn | acT | acA | 8374 | 344 | 0.0410795 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143T | T2906T | syn | acT | acC | 8374 | 171 | 0.0204203 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143I | T2906I | nonsyn | aCt | aTt | 3711 | 3711 | 1 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143del | T2906del | del | ACT | --- | 148 | 148 | 1 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143N | T2906N | nonsyn | aCt | aAt | 111 | 111 | 1 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143A | T2906A | nonsyn | Act | Gct | 107 | 107 | 1 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143M | T2906M | nonsyn | aCT | aTG | 25 | 25 | 1 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143S | T2906S | nonsyn | Act | Tct | 14 | 7 | 0.5 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143S | T2906S | nonsyn | aCt | aGt | 14 | 7 | 0.5 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143K | T2906K | nonsyn | aCT | aAA | 6 | 6 | 1 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143del1 | T2906del1 | del | acT | ac- | 6 | 3 | 0.5 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143del1 | T2906del1 | del | Act | -ct | 6 | 2 | 0.333333 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143del1 | T2906del1 | del | aCt | a-t | 6 | 1 | 0.166667 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143P | T2906P | nonsyn | Act | Cct | 5 | 5 | 1 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143del2 | T2906del2 | del | ACt | --t | 3 | 3 | 1 | 8981-8983 |
ORF1ab/nsp4 | 143 | T143F | T2906F | nonsyn | ACt | TTt | 1 | 1 | 1 | 8981-8983 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 7859 | 8374 | All | 0.001503 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 344 | 8374 | All | 0.000066 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 171 | 8374 | All | 0.000033 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 6268 | 6268 | B.1.221 | 0.445234 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3711 | 3711 | All | 0.00071 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1188 | 1188 | B.1.221.3 | 0.99 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 581 | 581 | AY.4 | 0.000904 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 578 | 578 | B.1.1.7 | 0.000517 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 499 | 499 | AY.43 | 0.002211 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 368 | 368 | B.1.617.2 | 0.001386 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 351 | 351 | AY.9 | 0.023726 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 239 | 281 | B.1.1.7 | 0.000214 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 38 | 281 | B.1.1.7 | 0.000034 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 4 | 281 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 242 | 242 | B.1.221.2 | 0.971888 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 183 | 183 | AY.3 | 0.00182 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 148 | 148 | All | 0.000028 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 111 | 111 | All | 0.000021 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 107 | 107 | All | 0.00002 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 96 | 96 | B.1.1.284 | 0.01031 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 56 | 63 | B.1 | 0.000513 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 6 | 63 | B.1 | 0.000055 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 63 | B.1 | 0.000009 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 63 | 63 | B.1.1.7 | 0.000056 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 62 | 62 | AY.39 | 0.001532 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 61 | 61 | B.1.177 | 0.000803 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 59 | 59 | B.1.258.17 | 0.006134 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 58 | 58 | B.1.2 | 0.000511 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 40 | 40 | AY.44 | 0.000243 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 40 | 40 | AY.99.2 | 0.003686 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 32 | 32 | AY.44 | 0.000195 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 30 | 30 | AY.46.4 | 0.004935 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 17 | 29 | B.1.617.2 | 0.000064 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 10 | 29 | B.1.617.2 | 0.000038 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 2 | 29 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 143 | T143M | aCT | aTG | 25 | 25 | All | 0.000005 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 25 | 25 | AY.103 | 0.000155 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 23 | 25 | AY.9.1 | 0.001926 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 2 | 25 | AY.9.1 | 0.000167 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 12 | 25 | B.1.177 | 0.000158 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 11 | 25 | B.1.177 | 0.000145 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 2 | 25 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 24 | 24 | B.1 | 0.00022 |
ORF1ab/nsp4 | 143 | T143M | aCT | aTG | 24 | 24 | B.1.221 | 0.001705 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 23 | 23 | AY.30 | 0.009102 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 23 | 23 | AY.47 | 0.000715 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 23 | 23 | B.1.351 | 0.000684 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 22 | 22 | AY.9.2.1 | 0.043478 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 22 | 22 | B.1.628 | 0.007752 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 21 | 21 | AY.4 | 0.000033 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 21 | 21 | B.1.1.371 | 0.21875 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 19 | 19 | AY.102 | 0.000504 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 19 | 19 | AY.75.1 | 0.003426 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 18 | 18 | C.36 | 0.016393 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 17 | 17 | AY.5.4 | 0.004704 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 17 | 17 | B.1.221 | 0.001208 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 17 | 17 | P.1 | 0.000268 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 16 | 16 | AY.14 | 0.001408 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 16 | 16 | B.1.1 | 0.00029 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 15 | 15 | A.23.1 | 0.010563 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 15 | 15 | AY.25 | 0.00009 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 15 | 15 | AY.46 | 0.001561 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 15 | 15 | B.1.177.77 | 0.010893 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 15 | 15 | B.1.36.17 | 0.007411 |
ORF1ab/nsp4 | 143 | T143S | Act | Tct | 7 | 14 | All | 0.000001 |
ORF1ab/nsp4 | 143 | T143S | aCt | aGt | 7 | 14 | All | 0.000001 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 14 | 14 | AY.35 | 0.003263 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 13 | 13 | AY.58 | 0.011797 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 8 | 13 | P.1 | 0.000126 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 3 | 13 | P.1 | 0.000047 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 2 | 13 | P.1 | 0.000032 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 11 | 11 | AE.7 | 0.916667 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 11 | 11 | AY.9 | 0.000744 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 10 | 10 | AY.3 | 0.000099 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 7 | 10 | B.1.1 | 0.000127 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 2 | 10 | B.1.1 | 0.000036 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 10 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 9 | 10 | B.1.210 | 0.01919 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 10 | B.1.210 | 0.002132 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 9 | 9 | AY.4 | 0.000014 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 9 | 9 | B.1.427 | 0.000454 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 7 | 9 | B.1.429 | 0.000165 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 2 | 9 | B.1.429 | 0.000047 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 8 | 8 | AY.43 | 0.000035 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 8 | 8 | AY.5 | 0.000165 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 8 | 8 | B.1.617.1 | 0.001032 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 7 | 7 | A.2.5.3 | 0.072165 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 7 | 7 | AY.75.1 | 0.001262 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 7 | 7 | B.1.1.519 | 0.000278 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 7 | 7 | B.1.160.32 | 0.030043 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 7 | 7 | B.1.235 | 0.017632 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 7 | 7 | B.1.36.1 | 0.007982 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 7 | 7 | B.1.36.1 | 0.007982 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 3 | 7 | Q.1 | 0.000379 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 3 | 7 | Q.1 | 0.000379 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 7 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 143 | T143K | aCT | aAA | 6 | 6 | All | 0.000001 |
ORF1ab/nsp4 | 143 | T143del1 | acT | ac- | 3 | 6 | All | 0.000001 |
ORF1ab/nsp4 | 143 | T143del1 | Act | -ct | 2 | 6 | All | 0 |
ORF1ab/nsp4 | 143 | T143del1 | aCt | a-t | 1 | 6 | All | 0 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 6 | 6 | AY.69 | 0.00112 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 6 | 6 | AY.92 | 0.001724 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 4 | 6 | B.1.160 | 0.000125 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 2 | 6 | B.1.160 | 0.000062 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 5 | 6 | B.1.526 | 0.000118 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 6 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 6 | 6 | B.4 | 0.013245 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 6 | 6 | P.1.12 | 0.002904 |
ORF1ab/nsp4 | 143 | T143P | Act | Cct | 5 | 5 | All | 0.000001 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 3 | 5 | AY.100 | 0.000138 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 2 | 5 | AY.100 | 0.000092 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 5 | 5 | AY.116 | 0.001434 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp4 | 143 | T143K | aCT | aAA | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 4 | 5 | AY.4 | 0.000006 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 5 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 3 | 5 | AY.44 | 0.000018 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 2 | 5 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 5 | 5 | AY.9.2 | 0.000184 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 3 | 5 | B.1.2 | 0.000026 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 5 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 5 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 4 | 4 | AY.94 | 0.001771 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 4 | 4 | B.1.1.121 | 0.009709 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 4 | 4 | B.1.1.277 | 0.003035 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 4 | 4 | B.1.1.291 | 0.00297 |
ORF1ab/nsp4 | 143 | T143del1 | acT | ac- | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 143 | T143del1 | Act | -ct | 2 | 4 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 4 | 4 | B.1.160.8 | 0.005155 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 4 | 4 | B.1.177.16 | 0.002658 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 4 | 4 | B.1.240 | 0.000862 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 4 | 4 | B.1.346 | 0.005242 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp4 | 143 | T143del2 | ACt | --t | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | AY.117 | 0.000254 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 3 | 3 | B.1.177.63 | 0.008108 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp4 | 143 | T143S | aCt | aGt | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 2 | 2 | A.21 | 0.00554 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 2 | AY.61 | 0.000105 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 2 | AY.61 | 0.000105 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.1.138 | 0.012121 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 2 | 2 | B.1.1.351 | 0.005587 |
ORF1ab/nsp4 | 143 | T143S | aCt | aGt | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 143 | T143S | Act | Tct | 1 | 2 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.177.52 | 0.003515 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.36.25 | 0.004415 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 2 | 2 | B.1.399 | 0.003868 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 2 | B.1.427 | 0.00005 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.505 | 0.008772 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 2 | 2 | B.1.506 | 0.047619 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 2 | 2 | C.32 | 0.046512 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | P.1.6 | 0.003891 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 2 | 2 | P.6 | 0.006289 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp4 | 143 | T143F | ACt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp4 | 143 | T143S | Act | Tct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 143 | T143F | ACt | TTt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 143 | T143S | Act | Tct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 143 | T143M | aCT | aTG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 143 | T143S | aCt | aGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 143 | T143S | Act | Tct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.1.162 | 0.029412 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.218 | 0.007692 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 143 | T143P | Act | Cct | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp4 | 143 | T143S | Act | Tct | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.361 | 0.045455 |
ORF1ab/nsp4 | 143 | T143S | aCt | aGt | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.1.451 | 0.038462 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp4 | 143 | T143del2 | ACt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp4 | 143 | T143P | Act | Cct | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp4 | 143 | T143del2 | ACt | --t | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 143 | T143P | Act | Cct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp4 | 143 | T143del2 | ACt | --t | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.177.9 | 0.001332 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp4 | 143 | T143S | Act | Tct | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 143 | T143del1 | aCt | a-t | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.343 | 0.020833 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 143 | T143P | Act | Cct | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp4 | 143 | T143P | Act | Cct | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp4 | 143 | T143S | aCt | aGt | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 143 | T143S | Act | Tct | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 143 | T143del1 | acT | ac- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 143 | T143K | aCT | aAA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp4 | 143 | T143T | acT | acG | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | C.36.1 | 0.004149 |
ORF1ab/nsp4 | 143 | T143T | acT | acC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | C.38 | 0.008065 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | N.8 | 0.03125 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 143 | T143A | Act | Gct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 143 | T143I | aCt | aTt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 143 | T143N | aCt | aAt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 143 | T143del | ACT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 143 | T143T | acT | acA | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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