CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 142 | Y142Y | Y2905Y | syn | taC | taT | 2317 | 2317 | 1 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142del | Y2905del | del | TAC | --- | 148 | 148 | 1 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142C | Y2905C | nonsyn | tAc | tGc | 36 | 32 | 0.888889 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142C | Y2905C | nonsyn | tAC | tGT | 36 | 4 | 0.111111 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142H | Y2905H | nonsyn | Tac | Cac | 15 | 13 | 0.866667 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142H | Y2905H | nonsyn | TaC | CaT | 15 | 2 | 0.133333 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142F | Y2905F | nonsyn | tAc | tTc | 6 | 6 | 1 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142del1 | Y2905del1 | del | Tac | -ac | 6 | 4 | 0.666667 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142del1 | Y2905del1 | del | TAC | -TT | 6 | 1 | 0.166667 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142del1 | Y2905del1 | del | TAc | C-c | 6 | 1 | 0.166667 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142N | Y2905N | nonsyn | Tac | Aac | 4 | 3 | 0.75 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142N | Y2905N | nonsyn | TaC | AaT | 4 | 1 | 0.25 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142del2 | Y2905del2 | del | TAc | --c | 3 | 3 | 1 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142X | Y2905X | nonsyn | taC | taA | 3 | 2 | 0.666667 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142X | Y2905X | nonsyn | taC | taG | 3 | 1 | 0.333333 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142S | Y2905S | nonsyn | TAc | AGc | 2 | 1 | 0.5 | 8978-8980 |
ORF1ab/nsp4 | 142 | Y142S | Y2905S | nonsyn | tAc | tCc | 2 | 1 | 0.5 | 8978-8980 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2317 | 2317 | All | 0.000443 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 330 | 330 | B.1.1.7 | 0.000295 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 306 | 306 | P.6 | 0.962264 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 258 | 258 | AY.9 | 0.01744 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 166 | 166 | B.1.617.2 | 0.000625 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 148 | 148 | All | 0.000028 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 144 | 144 | AY.23 | 0.010044 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 104 | 104 | AY.102 | 0.002757 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 83 | 83 | AY.4 | 0.000129 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 76 | 76 | AY.44 | 0.000463 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 65 | 65 | B.1.1.7 | 0.000058 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 61 | 61 | B.1.2 | 0.000537 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 52 | 52 | B.1.409 | 0.040625 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 42 | 42 | AY.103 | 0.000261 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 39 | 39 | AY.25 | 0.000235 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 32 | 36 | All | 0.000006 |
ORF1ab/nsp4 | 142 | Y142C | tAC | tGT | 4 | 36 | All | 0.000001 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 32 | 32 | B.1.177.21 | 0.002447 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 32 | 32 | B.1.221 | 0.002273 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 31 | 31 | P.1 | 0.000488 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 30 | 30 | AY.43 | 0.000133 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 24 | 24 | A.2 | 0.015884 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 24 | 24 | AY.50 | 0.019185 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 23 | 23 | AY.98 | 0.001817 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 23 | 23 | P.2 | 0.004293 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 21 | 21 | B.1.369 | 0.00599 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 20 | 20 | AY.3 | 0.000199 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 20 | 20 | B.1 | 0.000183 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 19 | 19 | AY.29 | 0.0003 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 19 | 19 | AY.9.2 | 0.000698 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 19 | 19 | B.1.258.17 | 0.001975 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 17 | 17 | AY.39 | 0.00042 |
ORF1ab/nsp4 | 142 | Y142H | Tac | Cac | 13 | 15 | All | 0.000002 |
ORF1ab/nsp4 | 142 | Y142H | TaC | CaT | 2 | 15 | All | 0 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 14 | 14 | B.1.239 | 0.017094 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 13 | 13 | AY.4 | 0.00002 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 11 | 11 | B.1.1.519 | 0.000437 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 10 | 10 | AY.5 | 0.000206 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 9 | 9 | B.1.526 | 0.000212 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 8 | 8 | B.1.427 | 0.000404 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 7 | 7 | AY.120 | 0.00026 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 7 | 7 | Q.3 | 0.001015 |
ORF1ab/nsp4 | 142 | Y142F | tAc | tTc | 6 | 6 | All | 0.000001 |
ORF1ab/nsp4 | 142 | Y142del1 | Tac | -ac | 4 | 6 | All | 0.000001 |
ORF1ab/nsp4 | 142 | Y142del1 | TAC | -TT | 1 | 6 | All | 0 |
ORF1ab/nsp4 | 142 | Y142del1 | TAc | C-c | 1 | 6 | All | 0 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 6 | 6 | AY.46 | 0.000624 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 5 | 6 | B.1.429 | 0.000118 |
ORF1ab/nsp4 | 142 | Y142C | tAC | tGT | 1 | 6 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 5 | 5 | AY.46.2 | 0.003177 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 5 | 5 | B | 0.000639 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 5 | 5 | B.1.2 | 0.000044 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 5 | 5 | B.1.582 | 0.002453 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp4 | 142 | Y142N | Tac | Aac | 3 | 4 | All | 0.000001 |
ORF1ab/nsp4 | 142 | Y142N | TaC | AaT | 1 | 4 | All | 0 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 4 | 4 | AY.13 | 0.000644 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 4 | 4 | AY.30 | 0.001583 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 4 | 4 | AY.61 | 0.000419 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 4 | 4 | B.1.1.176 | 0.001757 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 4 | 4 | P.1.17 | 0.000647 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | A.27 | 0.004967 |
ORF1ab/nsp4 | 142 | Y142del2 | TAc | --c | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 142 | Y142X | taC | taA | 2 | 3 | All | 0 |
ORF1ab/nsp4 | 142 | Y142X | taC | taG | 1 | 3 | All | 0 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp4 | 142 | Y142H | Tac | Cac | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | AY.4.1 | 0.002212 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp4 | 142 | Y142H | Tac | Cac | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp4 | 142 | Y142H | TaC | CaT | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp4 | 142 | Y142S | TAc | AGc | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 142 | Y142S | tAc | tCc | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp4 | 142 | Y142N | TaC | AaT | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 142 | Y142N | Tac | Aac | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | AY.94 | 0.000885 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp4 | 142 | Y142del1 | Tac | -ac | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 2 | 2 | B.1.177.63 | 0.005405 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp4 | 142 | Y142del1 | Tac | -ac | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp4 | 142 | Y142H | Tac | Cac | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp4 | 142 | Y142del2 | TAc | --c | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp4 | 142 | Y142F | tAc | tTc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 142 | Y142del2 | TAc | --c | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 142 | Y142H | Tac | Cac | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 142 | Y142F | tAc | tTc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 142 | Y142S | TAc | AGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 142 | Y142F | tAc | tTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp4 | 142 | Y142H | Tac | Cac | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 142 | Y142del2 | TAc | --c | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 142 | Y142H | Tac | Cac | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp4 | 142 | Y142S | tAc | tCc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.1.224 | 0.014286 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp4 | 142 | Y142X | taC | taA | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp4 | 142 | Y142F | tAc | tTc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp4 | 142 | Y142X | taC | taG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 142 | Y142H | Tac | Cac | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 142 | Y142del1 | Tac | -ac | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp4 | 142 | Y142N | Tac | Aac | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 142 | Y142del1 | TAc | C-c | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 142 | Y142X | taC | taA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 142 | Y142H | Tac | Cac | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 142 | Y142F | tAc | tTc | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.242 | 0.018868 |
ORF1ab/nsp4 | 142 | Y142C | tAC | tGT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp4 | 142 | Y142N | Tac | Aac | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.501 | 0.007353 |
ORF1ab/nsp4 | 142 | Y142C | tAC | tGT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp4 | 142 | Y142C | tAC | tGT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 142 | Y142H | Tac | Cac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 142 | Y142del1 | TAC | -TT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 142 | Y142C | tAc | tGc | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp4 | 142 | Y142Y | taC | taT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 142 | Y142F | tAc | tTc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 142 | Y142del | TAC | --- | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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