CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 137 & Codon = tTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4137S137LS2900LnonsyntCatTa17316173140.9998848963-8965

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4137S137LtCatTa1731417316All0.003312
ORF1ab/nsp4137S137LtCatTa43574357AY.40.006781
ORF1ab/nsp4137S137LtCatTa24492451AY.630.947389
ORF1ab/nsp4137S137LtCatTa20912091AY.50.043178
ORF1ab/nsp4137S137LtCatTa20742074B.1.1.70.001857
ORF1ab/nsp4137S137LtCatTa705705AY.30.007012
ORF1ab/nsp4137S137LtCatTa670670AY.250.00403
ORF1ab/nsp4137S137LtCatTa553553B.1.617.20.002082
ORF1ab/nsp4137S137LtCatTa290290AY.440.001765
ORF1ab/nsp4137S137LtCatTa279279B.1.3510.008294
ORF1ab/nsp4137S137LtCatTa224224AY.430.000992
ORF1ab/nsp4137S137LtCatTa222222AY.1030.001378
ORF1ab/nsp4137S137LtCatTa170170P.10.002678
ORF1ab/nsp4137S137LtCatTa168168B.1.20.001479
ORF1ab/nsp4137S137LtCatTa156156AY.1020.004136
ORF1ab/nsp4137S137LtCatTa138138B.1.1.2140.007653
ORF1ab/nsp4137S137LtCatTa131131AY.46.60.009459
ORF1ab/nsp4137S137LtCatTa128128AY.39.10.005071
ORF1ab/nsp4137S137LtCatTa126126B.1.1.4060.818182
ORF1ab/nsp4137S137LtCatTa124124AY.420.004989
ORF1ab/nsp4137S137LtCatTa118118AY.290.001861
ORF1ab/nsp4137S137LtCatTa106106AY.450.012899
ORF1ab/nsp4137S137LtCatTa102102AY.390.002521
ORF1ab/nsp4137S137LtCatTa8787AY.470.002706
ORF1ab/nsp4137S137LtCatTa7171AY.570.046588
ORF1ab/nsp4137S137LtCatTa6969B.10.000632
ORF1ab/nsp4137S137LtCatTa6363AY.460.006557
ORF1ab/nsp4137S137LtCatTa6060B.1.10.001088
ORF1ab/nsp4137S137LtCatTa5959AY.320.031416
ORF1ab/nsp4137S137LtCatTa4848AY.200.001866
ORF1ab/nsp4137S137LtCatTa4848AY.60.001974
ORF1ab/nsp4137S137LtCatTa4444AY.260.001246
ORF1ab/nsp4137S137LtCatTa4141AY.9.20.001506
ORF1ab/nsp4137S137LtCatTa3939P.1.140.001864
ORF1ab/nsp4137S137LtCatTa3636B.1.5260.000846
ORF1ab/nsp4137S137LtCatTa3535AY.410.010288
ORF1ab/nsp4137S137LtCatTa3535B.1.1770.000461
ORF1ab/nsp4137S137LtCatTa3535B.1.617.10.004514
ORF1ab/nsp4137S137LtCatTa3434AY.740.003932
ORF1ab/nsp4137S137LtCatTa3434AY.750.001905
ORF1ab/nsp4137S137LtCatTa3131AY.330.00207
ORF1ab/nsp4137S137LtCatTa3030B.1.1600.000936
ORF1ab/nsp4137S137LtCatTa2727AY.610.002829
ORF1ab/nsp4137S137LtCatTa2525AY.1200.000929
ORF1ab/nsp4137S137LtCatTa2525B.1.6210.002213
ORF1ab/nsp4137S137LtCatTa2424AY.1170.002028
ORF1ab/nsp4137S137LtCatTa2424AY.4.20.000521
ORF1ab/nsp4137S137LtCatTa2323B.1.4290.000541
ORF1ab/nsp4137S137LtCatTa2323P.1.150.005344
ORF1ab/nsp4137S137LtCatTa2222AY.1000.001012
ORF1ab/nsp4137S137LtCatTa2222B.1.1.5190.000874
ORF1ab/nsp4137S137LtCatTa2121B.1.2430.001461
ORF1ab/nsp4137S137LtCatTa2020AY.560.032103
ORF1ab/nsp4137S137LtCatTa2020AY.9.10.001674
ORF1ab/nsp4137S137LtCatTa2020B.1.6370.001461
ORF1ab/nsp4137S137LtCatTa1818AY.1180.001128
ORF1ab/nsp4137S137LtCatTa1818B.1.5960.001568
ORF1ab/nsp4137S137LtCatTa1717AY.1190.0006
ORF1ab/nsp4137S137LtCatTa1717AY.690.003173
ORF1ab/nsp4137S137LtCatTa1515AY.1110.002747
ORF1ab/nsp4137S137LtCatTa1515B.1.2580.000998
ORF1ab/nsp4137S137LtCatTa1414AY.240.006034
ORF1ab/nsp4137S137LtCatTa1414AY.99.20.00129
ORF1ab/nsp4137S137LtCatTa1313AY.5.40.003597
ORF1ab/nsp4137S137LtCatTa1212AY.1130.001709
ORF1ab/nsp4137S137LtCatTa1212AY.1140.002773
ORF1ab/nsp4137S137LtCatTa1212AY.90.000811
ORF1ab/nsp4137S137LtCatTa1212Q.80.001979
ORF1ab/nsp4137S137LtCatTa1111AY.1060.003684
ORF1ab/nsp4137S137LtCatTa1111AY.190.012543
ORF1ab/nsp4137S137LtCatTa1010AY.140.00088
ORF1ab/nsp4137S137LtCatTa1010AY.46.40.001645
ORF1ab/nsp4137S137LtCatTa99AY.1210.001218
ORF1ab/nsp4137S137LtCatTa99AY.340.000873
ORF1ab/nsp4137S137LtCatTa99AY.46.10.00924
ORF1ab/nsp4137S137LtCatTa99AY.46.20.005718
ORF1ab/nsp4137S137LtCatTa99B.1.360.001313
ORF1ab/nsp4137S137LtCatTa99C.370.001045
ORF1ab/nsp4137S137LtCatTa88AY.1090.005917
ORF1ab/nsp4137S137LtCatTa88AY.4.50.00086
ORF1ab/nsp4137S137LtCatTa88AY.900.005476
ORF1ab/nsp4137S137LtCatTa88B.1.177.810.001515
ORF1ab/nsp4137S137LtCatTa77AY.1080.007718
ORF1ab/nsp4137S137LtCatTa77AY.360.001037
ORF1ab/nsp4137S137LtCatTa77AY.98.10.000339
ORF1ab/nsp4137S137LtCatTa66AY.230.000418
ORF1ab/nsp4137S137LtCatTa66AY.380.002996
ORF1ab/nsp4137S137LtCatTa66B.1.1.2160.005343
ORF1ab/nsp4137S137LtCatTa66B.1.4270.000303
ORF1ab/nsp4137S137LtCatTa55A.23.10.003521
ORF1ab/nsp4137S137LtCatTa55AY.270.000324
ORF1ab/nsp4137S137LtCatTa55B.1.177.60.004883
ORF1ab/nsp4137S137LtCatTa55B.1.258.170.00052
ORF1ab/nsp4137S137LtCatTa55B.1.5230.012255
ORF1ab/nsp4137S137LtCatTa55B.1.5250.000566
ORF1ab/nsp4137S137LtCatTa55P.1.160.001871
ORF1ab/nsp4137S137LtCatTa55Q.10.000632
ORF1ab/nsp4137S137LtCatTa44AY.1160.001147
ORF1ab/nsp4137S137LtCatTa44AY.16.10.00188
ORF1ab/nsp4137S137LtCatTa44AY.29.10.000882
ORF1ab/nsp4137S137LtCatTa44AY.540.000381
ORF1ab/nsp4137S137LtCatTa44AY.75.10.000721
ORF1ab/nsp4137S137LtCatTa44AY.910.002922
ORF1ab/nsp4137S137LtCatTa44AY.930.001092
ORF1ab/nsp4137S137LtCatTa44AY.980.000316
ORF1ab/nsp4137S137LtCatTa44B.1.1.3170.001647
ORF1ab/nsp4137S137LtCatTa44B.1.2340.000528
ORF1ab/nsp4137S137LtCatTa44B.1.5750.001214
ORF1ab/nsp4137S137LtCatTa44B.1.6090.001918
ORF1ab/nsp4137S137LtCatTa44D.20.0003
ORF1ab/nsp4137S137LtCatTa44P.1.120.001936
ORF1ab/nsp4137S137LtCatTa33AY.130.000483
ORF1ab/nsp4137S137LtCatTa33AY.370.000948
ORF1ab/nsp4137S137LtCatTa33AY.4.30.002525
ORF1ab/nsp4137S137LtCatTa33AY.4.40.001227
ORF1ab/nsp4137S137LtCatTa33AY.400.002893
ORF1ab/nsp4137S137LtCatTa33AY.670.001393
ORF1ab/nsp4137S137LtCatTa33AY.710.001425
ORF1ab/nsp4137S137LtCatTa33AY.920.000862
ORF1ab/nsp4137S137LtCatTa33B.1.1.10.00098
ORF1ab/nsp4137S137LtCatTa33B.1.1.2220.000612
ORF1ab/nsp4137S137LtCatTa33B.1.1.2840.000322
ORF1ab/nsp4137S137LtCatTa33B.1.1.500.002037
ORF1ab/nsp4137S137LtCatTa33B.1.160.160.002788
ORF1ab/nsp4137S137LtCatTa33B.1.177.860.00055
ORF1ab/nsp4137S137LtCatTa33B.1.2210.000213
ORF1ab/nsp4137S137LtCatTa33B.1.258.160.00491
ORF1ab/nsp4137S137LtCatTa33B.1.36.170.001482
ORF1ab/nsp4137S137LtCatTa33B.1.36.70.012
ORF1ab/nsp4137S137LtCatTa33B.1.3620.004622
ORF1ab/nsp4137S137LtCatTa33B.1.6230.001609
ORF1ab/nsp4137S137LtCatTa33P.1.70.000958
ORF1ab/nsp4137S137LtCatTa33R.10.00027
ORF1ab/nsp4137S137LtCatTa22A.2.50.000998
ORF1ab/nsp4137S137LtCatTa22A.2.5.20.003145
ORF1ab/nsp4137S137LtCatTa22AY.10.000791
ORF1ab/nsp4137S137LtCatTa22AY.120.000632
ORF1ab/nsp4137S137LtCatTa22AY.120.2.10.000997
ORF1ab/nsp4137S137LtCatTa22AY.3.10.000171
ORF1ab/nsp4137S137LtCatTa22AY.300.000791
ORF1ab/nsp4137S137LtCatTa22AY.520.001629
ORF1ab/nsp4137S137LtCatTa22AY.530.000575
ORF1ab/nsp4137S137LtCatTa22AY.590.001059
ORF1ab/nsp4137S137LtCatTa22AY.640.00119
ORF1ab/nsp4137S137LtCatTa22AY.650.001066
ORF1ab/nsp4137S137LtCatTa22AY.700.000417
ORF1ab/nsp4137S137LtCatTa22AY.950.001522
ORF1ab/nsp4137S137LtCatTa22AZ.20.001642
ORF1ab/nsp4137S137LtCatTa22B0.000256
ORF1ab/nsp4137S137LtCatTa22B.1.1.1570.001826
ORF1ab/nsp4137S137LtCatTa22B.1.1.1760.000879
ORF1ab/nsp4137S137LtCatTa22B.1.1.280.000622
ORF1ab/nsp4137S137LtCatTa22B.1.1.2940.002532
ORF1ab/nsp4137S137LtCatTa22B.1.1.3060.000877
ORF1ab/nsp4137S137LtCatTa22B.1.1.3720.001377
ORF1ab/nsp4137S137LtCatTa22B.1.1.630.000772
ORF1ab/nsp4137S137LtCatTa22B.1.110.30.001437
ORF1ab/nsp4137S137LtCatTa22B.1.177.210.000153
ORF1ab/nsp4137S137LtCatTa22B.1.177.460.001837
ORF1ab/nsp4137S137LtCatTa22B.1.177.840.013333
ORF1ab/nsp4137S137LtCatTa22B.1.177.870.001456
ORF1ab/nsp4137S137LtCatTa22B.1.2060.001631
ORF1ab/nsp4137S137LtCatTa22B.1.214.20.001199
ORF1ab/nsp4137S137LtCatTa22B.1.2320.001075
ORF1ab/nsp4137S137LtCatTa22B.1.2360.004107
ORF1ab/nsp4137S137LtCatTa22B.1.2500.028986
ORF1ab/nsp4137S137LtCatTa22B.1.258.220.005333
ORF1ab/nsp4137S137LtCatTa22B.1.2650.002541
ORF1ab/nsp4137S137LtCatTa22B.1.3200.002491
ORF1ab/nsp4137S137LtCatTa22B.1.3320.006993
ORF1ab/nsp4137S137LtCatTa22B.1.3400.008584
ORF1ab/nsp4137S137LtCatTa22B.1.3890.002004
ORF1ab/nsp4137S137LtCatTa22B.1.466.20.000782
ORF1ab/nsp4137S137LtCatTa22B.1.5240.002813
ORF1ab/nsp4137S137LtCatTa22B.1.5600.009259
ORF1ab/nsp4137S137LtCatTa22B.1.5950.000522
ORF1ab/nsp4137S137LtCatTa22B.1.6190.001742
ORF1ab/nsp4137S137LtCatTa22B.1.6280.000705
ORF1ab/nsp4137S137LtCatTa22B.1.6340.006849
ORF1ab/nsp4137S137LtCatTa22B.40.004415
ORF1ab/nsp4137S137LtCatTa22P.1.10.000635
ORF1ab/nsp4137S137LtCatTa22P.1.100.000539
ORF1ab/nsp4137S137LtCatTa22P.1.170.000324
ORF1ab/nsp4137S137LtCatTa11A0.000387
ORF1ab/nsp4137S137LtCatTa11A.2.5.10.004808
ORF1ab/nsp4137S137LtCatTa11A.220.066667
ORF1ab/nsp4137S137LtCatTa11A.30.002096
ORF1ab/nsp4137S137LtCatTa11AD.20.000219
ORF1ab/nsp4137S137LtCatTa11AE.80.000489
ORF1ab/nsp4137S137LtCatTa11AY.1050.000643
ORF1ab/nsp4137S137LtCatTa11AY.1070.000466
ORF1ab/nsp4137S137LtCatTa11AY.116.10.000311
ORF1ab/nsp4137S137LtCatTa11AY.120.10.000321
ORF1ab/nsp4137S137LtCatTa11AY.120.20.001285
ORF1ab/nsp4137S137LtCatTa11AY.160.00038
ORF1ab/nsp4137S137LtCatTa11AY.23.10.000417
ORF1ab/nsp4137S137LtCatTa11AY.350.000233
ORF1ab/nsp4137S137LtCatTa11AY.490.003195
ORF1ab/nsp4137S137LtCatTa11AY.5.20.002463
ORF1ab/nsp4137S137LtCatTa11AY.5.30.000337
ORF1ab/nsp4137S137LtCatTa11AY.550.000917
ORF1ab/nsp4137S137LtCatTa11AY.580.000907
ORF1ab/nsp4137S137LtCatTa11AY.600.000938
ORF1ab/nsp4137S137LtCatTa11AY.680.000274
ORF1ab/nsp4137S137LtCatTa11AY.70.000196
ORF1ab/nsp4137S137LtCatTa11AY.7.10.000113
ORF1ab/nsp4137S137LtCatTa11AY.7.20.000559
ORF1ab/nsp4137S137LtCatTa11AY.720.001361
ORF1ab/nsp4137S137LtCatTa11AY.730.000665
ORF1ab/nsp4137S137LtCatTa11AY.770.001127
ORF1ab/nsp4137S137LtCatTa11AY.790.001211
ORF1ab/nsp4137S137LtCatTa11AY.80.000606
ORF1ab/nsp4137S137LtCatTa11AY.820.001357
ORF1ab/nsp4137S137LtCatTa11AY.840.000437
ORF1ab/nsp4137S137LtCatTa11AY.850.000427
ORF1ab/nsp4137S137LtCatTa11AY.860.00083
ORF1ab/nsp4137S137LtCatTa11AY.880.000884
ORF1ab/nsp4137S137LtCatTa11AY.890.004902
ORF1ab/nsp4137S137LtCatTa11AY.970.001701
ORF1ab/nsp4137S137LtCatTa11AY.990.001049
ORF1ab/nsp4137S137LtCatTa11AY.99.10.001553
ORF1ab/nsp4137S137LtCatTa11AZ.10.000867
ORF1ab/nsp4137S137LtCatTa11B.1.1.1210.002427
ORF1ab/nsp4137S137LtCatTa11B.1.1.1890.001513
ORF1ab/nsp4137S137LtCatTa11B.1.1.2050.003717
ORF1ab/nsp4137S137LtCatTa11B.1.1.2100.005714
ORF1ab/nsp4137S137LtCatTa11B.1.1.2210.010101
ORF1ab/nsp4137S137LtCatTa11B.1.1.2580.003257
ORF1ab/nsp4137S137LtCatTa11B.1.1.270.00565
ORF1ab/nsp4137S137LtCatTa11B.1.1.2890.002083
ORF1ab/nsp4137S137LtCatTa11B.1.1.3110.000358
ORF1ab/nsp4137S137LtCatTa11B.1.1.3160.000925
ORF1ab/nsp4137S137LtCatTa11B.1.1.3370.003597
ORF1ab/nsp4137S137LtCatTa11B.1.1.3540.004386
ORF1ab/nsp4137S137LtCatTa11B.1.1.3730.02381
ORF1ab/nsp4137S137LtCatTa11B.1.1.3980.003226
ORF1ab/nsp4137S137LtCatTa11B.1.1.4160.000905
ORF1ab/nsp4137S137LtCatTa11B.1.1.4170.002703
ORF1ab/nsp4137S137LtCatTa11B.1.1.4290.004608
ORF1ab/nsp4137S137LtCatTa11B.1.1.4330.001425
ORF1ab/nsp4137S137LtCatTa11B.1.1.4860.001577
ORF1ab/nsp4137S137LtCatTa11B.1.1.5250.005464
ORF1ab/nsp4137S137LtCatTa11B.1.1.530.013699
ORF1ab/nsp4137S137LtCatTa11B.1.1100.004525
ORF1ab/nsp4137S137LtCatTa11B.1.1280.000635
ORF1ab/nsp4137S137LtCatTa11B.1.130.002375
ORF1ab/nsp4137S137LtCatTa11B.1.1390.000733
ORF1ab/nsp4137S137LtCatTa11B.1.177.180.00116
ORF1ab/nsp4137S137LtCatTa11B.1.177.320.00135
ORF1ab/nsp4137S137LtCatTa11B.1.177.40.000211
ORF1ab/nsp4137S137LtCatTa11B.1.177.440.000519
ORF1ab/nsp4137S137LtCatTa11B.1.177.480.003125
ORF1ab/nsp4137S137LtCatTa11B.1.177.600.000218
ORF1ab/nsp4137S137LtCatTa11B.1.177.720.00339
ORF1ab/nsp4137S137LtCatTa11B.1.177.820.000477
ORF1ab/nsp4137S137LtCatTa11B.1.220.001318
ORF1ab/nsp4137S137LtCatTa11B.1.2370.004975
ORF1ab/nsp4137S137LtCatTa11B.1.2400.000216
ORF1ab/nsp4137S137LtCatTa11B.1.258.120.007874
ORF1ab/nsp4137S137LtCatTa11B.1.2700.005618
ORF1ab/nsp4137S137LtCatTa11B.1.3110.000275
ORF1ab/nsp4137S137LtCatTa11B.1.3490.000715
ORF1ab/nsp4137S137LtCatTa11B.1.351.30.000876
ORF1ab/nsp4137S137LtCatTa11B.1.36.10.00114
ORF1ab/nsp4137S137LtCatTa11B.1.36.210.00216
ORF1ab/nsp4137S137LtCatTa11B.1.36.290.000517
ORF1ab/nsp4137S137LtCatTa11B.1.36.360.000602
ORF1ab/nsp4137S137LtCatTa11B.1.36.380.001642
ORF1ab/nsp4137S137LtCatTa11B.1.3610.001289
ORF1ab/nsp4137S137LtCatTa11B.1.362.20.004717
ORF1ab/nsp4137S137LtCatTa11B.1.3700.008
ORF1ab/nsp4137S137LtCatTa11B.1.3950.007042
ORF1ab/nsp4137S137LtCatTa11B.1.3970.004854
ORF1ab/nsp4137S137LtCatTa11B.1.3990.001934
ORF1ab/nsp4137S137LtCatTa11B.1.4000.000429
ORF1ab/nsp4137S137LtCatTa11B.1.4230.010204
ORF1ab/nsp4137S137LtCatTa11B.1.438.10.000107
ORF1ab/nsp4137S137LtCatTa11B.1.5090.000866
ORF1ab/nsp4137S137LtCatTa11B.1.5170.000427
ORF1ab/nsp4137S137LtCatTa11B.1.5270.003704
ORF1ab/nsp4137S137LtCatTa11B.1.5400.009709
ORF1ab/nsp4137S137LtCatTa11B.1.5580.004566
ORF1ab/nsp4137S137LtCatTa11B.1.5610.000397
ORF1ab/nsp4137S137LtCatTa11B.1.5680.001111
ORF1ab/nsp4137S137LtCatTa11B.1.5700.002941
ORF1ab/nsp4137S137LtCatTa11B.1.575.10.002439
ORF1ab/nsp4137S137LtCatTa11B.1.5820.000491
ORF1ab/nsp4137S137LtCatTa11B.1.6200.000946
ORF1ab/nsp4137S137LtCatTa11B.1.6250.002353
ORF1ab/nsp4137S137LtCatTa11B.1.80.001972
ORF1ab/nsp4137S137LtCatTa11C.160.00106
ORF1ab/nsp4137S137LtCatTa11C.37.10.002618
ORF1ab/nsp4137S137LtCatTa11P.1.130.000898
ORF1ab/nsp4137S137LtCatTa11P.1.60.001946
ORF1ab/nsp4137S137LtCatTa11P.20.000187
ORF1ab/nsp4137S137LtCatTa11Q.30.000145
ORF1ab/nsp4137S137LtCatTa11Q.60.006623

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.