CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 137 | S137L | S2900L | nonsyn | tCa | tTa | 17316 | 17314 | 0.999884 | 8963-8965 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 17314 | 17316 | All | 0.003312 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4357 | 4357 | AY.4 | 0.006781 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2449 | 2451 | AY.63 | 0.947389 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2091 | 2091 | AY.5 | 0.043178 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2074 | 2074 | B.1.1.7 | 0.001857 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 705 | 705 | AY.3 | 0.007012 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 670 | 670 | AY.25 | 0.00403 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 553 | 553 | B.1.617.2 | 0.002082 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 290 | 290 | AY.44 | 0.001765 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 279 | 279 | B.1.351 | 0.008294 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 224 | 224 | AY.43 | 0.000992 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 222 | 222 | AY.103 | 0.001378 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 170 | 170 | P.1 | 0.002678 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 168 | 168 | B.1.2 | 0.001479 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 156 | 156 | AY.102 | 0.004136 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 138 | 138 | B.1.1.214 | 0.007653 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 131 | 131 | AY.46.6 | 0.009459 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 128 | 128 | AY.39.1 | 0.005071 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 126 | 126 | B.1.1.406 | 0.818182 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 124 | 124 | AY.42 | 0.004989 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 118 | 118 | AY.29 | 0.001861 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 106 | 106 | AY.45 | 0.012899 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 102 | 102 | AY.39 | 0.002521 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 87 | 87 | AY.47 | 0.002706 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 71 | 71 | AY.57 | 0.046588 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 69 | 69 | B.1 | 0.000632 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 63 | 63 | AY.46 | 0.006557 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 60 | 60 | B.1.1 | 0.001088 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 59 | 59 | AY.32 | 0.031416 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 48 | 48 | AY.20 | 0.001866 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 48 | 48 | AY.6 | 0.001974 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 44 | 44 | AY.26 | 0.001246 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 41 | 41 | AY.9.2 | 0.001506 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 39 | 39 | P.1.14 | 0.001864 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 36 | 36 | B.1.526 | 0.000846 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 35 | 35 | AY.41 | 0.010288 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 35 | 35 | B.1.177 | 0.000461 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 35 | 35 | B.1.617.1 | 0.004514 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 34 | 34 | AY.74 | 0.003932 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 34 | 34 | AY.75 | 0.001905 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 31 | 31 | AY.33 | 0.00207 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 30 | 30 | B.1.160 | 0.000936 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 27 | 27 | AY.61 | 0.002829 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 25 | 25 | AY.120 | 0.000929 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 25 | 25 | B.1.621 | 0.002213 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 24 | 24 | AY.117 | 0.002028 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 24 | 24 | AY.4.2 | 0.000521 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 23 | 23 | B.1.429 | 0.000541 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 23 | 23 | P.1.15 | 0.005344 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 22 | 22 | AY.100 | 0.001012 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 22 | 22 | B.1.1.519 | 0.000874 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 21 | 21 | B.1.243 | 0.001461 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 20 | 20 | AY.56 | 0.032103 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 20 | 20 | AY.9.1 | 0.001674 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 20 | 20 | B.1.637 | 0.001461 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 18 | 18 | AY.118 | 0.001128 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 18 | 18 | B.1.596 | 0.001568 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 17 | 17 | AY.119 | 0.0006 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 17 | 17 | AY.69 | 0.003173 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 15 | 15 | AY.111 | 0.002747 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 15 | 15 | B.1.258 | 0.000998 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 14 | 14 | AY.24 | 0.006034 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 14 | 14 | AY.99.2 | 0.00129 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 13 | 13 | AY.5.4 | 0.003597 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 12 | 12 | AY.113 | 0.001709 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 12 | 12 | AY.114 | 0.002773 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 12 | 12 | AY.9 | 0.000811 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 12 | 12 | Q.8 | 0.001979 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 11 | 11 | AY.106 | 0.003684 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 11 | 11 | AY.19 | 0.012543 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 10 | 10 | AY.14 | 0.00088 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 10 | 10 | AY.46.4 | 0.001645 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 9 | 9 | AY.121 | 0.001218 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 9 | 9 | AY.34 | 0.000873 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 9 | 9 | AY.46.1 | 0.00924 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 9 | 9 | AY.46.2 | 0.005718 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 9 | 9 | B.1.36 | 0.001313 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 8 | 8 | AY.109 | 0.005917 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 8 | 8 | AY.90 | 0.005476 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 8 | 8 | B.1.177.81 | 0.001515 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 7 | 7 | AY.108 | 0.007718 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 7 | 7 | AY.98.1 | 0.000339 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 6 | 6 | AY.38 | 0.002996 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 6 | 6 | B.1.1.216 | 0.005343 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 6 | 6 | B.1.427 | 0.000303 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 5 | 5 | A.23.1 | 0.003521 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 5 | 5 | AY.27 | 0.000324 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 5 | 5 | B.1.177.6 | 0.004883 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 5 | 5 | B.1.523 | 0.012255 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 5 | 5 | P.1.16 | 0.001871 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | AY.116 | 0.001147 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | AY.16.1 | 0.00188 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | AY.54 | 0.000381 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | AY.91 | 0.002922 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | AY.93 | 0.001092 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | B.1.575 | 0.001214 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | AY.4.3 | 0.002525 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | AY.40 | 0.002893 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | AY.92 | 0.000862 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.1.50 | 0.002037 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.160.16 | 0.002788 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.258.16 | 0.00491 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.36.7 | 0.012 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.362 | 0.004622 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | A.2.5.2 | 0.003145 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.120.2.1 | 0.000997 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B | 0.000256 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.1.157 | 0.001826 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.177.46 | 0.001837 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.177.84 | 0.013333 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.232 | 0.001075 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.250 | 0.028986 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.258.22 | 0.005333 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.320 | 0.002491 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.332 | 0.006993 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.340 | 0.008584 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.1.634 | 0.006849 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | P.1.1 | 0.000635 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | A | 0.000387 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | A.22 | 0.066667 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.417 | 0.002703 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.429 | 0.004608 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.258.12 | 0.007874 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.36.21 | 0.00216 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.362.2 | 0.004717 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.370 | 0.008 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.395 | 0.007042 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.423 | 0.010204 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.575.1 | 0.002439 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | B.1.8 | 0.001972 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp4 | 137 | S137L | tCa | tTa | 1 | 1 | Q.6 | 0.006623 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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