CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 132 | I132I | I2895I | syn | atC | atT | 34503 | 34349 | 0.995537 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132I | I2895I | syn | atC | atA | 34503 | 154 | 0.00446338 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132V | I2895V | nonsyn | Atc | Gtc | 186 | 185 | 0.994624 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132V | I2895V | nonsyn | AtC | GtG | 186 | 1 | 0.00537634 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132del | I2895del | del | ATC | --- | 157 | 157 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132T | I2895T | nonsyn | aTc | aCc | 157 | 155 | 0.987261 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132T | I2895T | nonsyn | aTC | aCA | 157 | 2 | 0.0127389 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132L | I2895L | nonsyn | Atc | Ctc | 46 | 46 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132M | I2895M | nonsyn | atC | atG | 7 | 7 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132F | I2895F | nonsyn | Atc | Ttc | 5 | 5 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132K | I2895K | nonsyn | aTC | aAA | 3 | 3 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132del1 | I2895del1 | del | Atc | -tc | 3 | 3 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132N | I2895N | nonsyn | aTc | aAc | 3 | 3 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132R | I2895R | nonsyn | aTC | aGA | 1 | 1 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132G | I2895G | nonsyn | ATc | GGc | 1 | 1 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132S | I2895S | nonsyn | aTc | aGc | 1 | 1 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132del2 | I2895del2 | del | ATc | --c | 1 | 1 | 1 | 8948-8950 |
ORF1ab/nsp4 | 132 | I132H | I2895H | nonsyn | ATc | CAc | 1 | 1 | 1 | 8948-8950 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 34349 | 34503 | All | 0.00657 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 154 | 34503 | All | 0.000029 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 28004 | 28007 | B.1.1.7 | 0.02507 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 3 | 28007 | B.1.1.7 | 0.000003 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 611 | 612 | AY.4 | 0.000951 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 612 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 457 | 457 | AY.28 | 0.863894 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 312 | 315 | B.1.617.2 | 0.001175 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 3 | 315 | B.1.617.2 | 0.000011 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 265 | 266 | AY.44 | 0.001613 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 266 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 259 | 261 | AY.103 | 0.001608 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 2 | 261 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 240 | 240 | D.2 | 0.01801 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 218 | 218 | B.1.235 | 0.549118 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 215 | 215 | B.1.408 | 0.793358 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 200 | 208 | AY.43 | 0.000886 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 8 | 208 | AY.43 | 0.000035 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 193 | 193 | A.3 | 0.404612 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 191 | 191 | Q.8 | 0.031497 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 185 | 186 | All | 0.000035 |
ORF1ab/nsp4 | 132 | I132V | AtC | GtG | 1 | 186 | All | 0 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 142 | 173 | AY.3 | 0.001412 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 31 | 173 | AY.3 | 0.000308 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 171 | 172 | B.1.2 | 0.001506 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 172 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 164 | 165 | P.1 | 0.002584 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 165 | P.1 | 0.000016 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 157 | 157 | All | 0.00003 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 155 | 157 | All | 0.00003 |
ORF1ab/nsp4 | 132 | I132T | aTC | aCA | 2 | 157 | All | 0 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 140 | 143 | B.1 | 0.001282 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 3 | 143 | B.1 | 0.000027 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 124 | 125 | B.1.1 | 0.002249 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 125 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 113 | 113 | AY.102 | 0.002996 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 105 | 105 | B.1.351 | 0.003121 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 99 | 99 | B.1.526 | 0.002327 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 95 | 95 | B.1.177.62 | 0.11323 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 87 | 87 | B.1.1.1 | 0.028422 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 86 | 87 | Q.1 | 0.010864 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 87 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 84 | 84 | B.1.177 | 0.001106 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 76 | 78 | AY.25 | 0.000457 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 2 | 78 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 77 | 77 | AY.5 | 0.00159 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 75 | 75 | B.1.1.7 | 0.000067 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 66 | 66 | B.1.596 | 0.005751 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 65 | 65 | B.1.637 | 0.00475 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 58 | 59 | B.1.1.7 | 0.000052 |
ORF1ab/nsp4 | 132 | I132V | AtC | GtG | 1 | 59 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 58 | 58 | B.1.1.291 | 0.043059 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 58 | 58 | P.5 | 0.794521 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 51 | 51 | B.1.280 | 0.364286 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 51 | 51 | B.1.621 | 0.004514 |
ORF1ab/nsp4 | 132 | I132L | Atc | Ctc | 46 | 46 | All | 0.000009 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 46 | 46 | B.1.526 | 0.001081 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 43 | 43 | AY.120.1 | 0.013804 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 40 | 40 | B.1.1.318 | 0.01207 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 37 | 37 | AY.39 | 0.000914 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 37 | 37 | B.1.1.519 | 0.001469 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 37 | 37 | B.1.160 | 0.001154 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 36 | 36 | AY.29 | 0.000568 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 31 | 31 | AY.25 | 0.000186 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 30 | 30 | B.1.1.7 | 0.000027 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 28 | 28 | AY.26 | 0.000793 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 28 | 28 | B.1.429 | 0.000659 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 28 | 28 | P.1.17 | 0.004529 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 21 | 26 | AY.118 | 0.001316 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 5 | 26 | AY.118 | 0.000313 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 26 | 26 | AY.4.2 | 0.000564 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 25 | 25 | AY.50 | 0.019984 |
ORF1ab/nsp4 | 132 | I132L | Atc | Ctc | 25 | 25 | B.1.2 | 0.00022 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 25 | 25 | B.1.405 | 0.308642 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 24 | 24 | AY.54 | 0.002288 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 24 | 24 | B.1.532 | 0.149068 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 23 | 23 | AY.5.4 | 0.006364 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 23 | 23 | B.1.258 | 0.001531 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 22 | 22 | AY.68 | 0.006022 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 22 | 22 | B.1.160.28 | 0.064327 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 21 | 21 | B.1.320 | 0.026152 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 20 | 20 | AY.26 | 0.000566 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 18 | 19 | AY.61 | 0.001886 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 19 | AY.61 | 0.000105 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 18 | 18 | AY.47 | 0.00056 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 17 | 17 | AY.42 | 0.000684 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 17 | 17 | AY.75 | 0.000952 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 16 | 17 | AY.9.2 | 0.000588 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 17 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 17 | 17 | B.1.1.265 | 0.053628 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 17 | 17 | B.1.427 | 0.000858 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 16 | 16 | B.1.160.27 | 0.242424 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 14 | 14 | B.1.1.397 | 0.031532 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 13 | 14 | P.1.14 | 0.000621 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 14 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 13 | 13 | B.1.1.306 | 0.005699 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 13 | 13 | B.1.110.3 | 0.009339 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 13 | 13 | B.1.93 | 0.012138 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 12 | 12 | AY.117 | 0.001014 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 12 | 12 | AY.20 | 0.000466 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 12 | 12 | AY.36 | 0.001779 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 12 | 12 | B.1.1.222 | 0.002448 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 12 | 12 | C.35 | 0.009288 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 11 | 11 | AY.32 | 0.005857 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 11 | 11 | AY.39.1 | 0.000436 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 10 | 10 | AY.33 | 0.000668 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 10 | 10 | AY.46 | 0.001041 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 10 | 10 | AY.9 | 0.000676 |
ORF1ab/nsp4 | 132 | I132L | Atc | Ctc | 10 | 10 | B.1.1.222 | 0.00204 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 10 | 10 | B.1.177.69 | 0.014837 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 10 | 10 | B.1.221 | 0.00071 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 9 | 9 | AY.35 | 0.002097 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 9 | 9 | AY.75.1 | 0.001623 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 9 | 9 | B.1.177.44 | 0.00467 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 9 | 9 | B.1.243 | 0.000626 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 9 | 9 | R.1 | 0.00081 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 8 | 8 | AY.46.4 | 0.001316 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 8 | 8 | W.3 | 0.042105 |
ORF1ab/nsp4 | 132 | I132M | atC | atG | 7 | 7 | All | 0.000001 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 7 | 7 | B.1.1.214 | 0.000388 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 7 | 7 | B.1.402 | 0.068627 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 7 | 7 | B.1.621.1 | 0.003541 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 7 | 7 | C.37 | 0.000812 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 6 | 6 | AY.103 | 0.000037 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 6 | 6 | AY.46.6 | 0.000433 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 6 | 6 | B | 0.000767 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 6 | 6 | B.1.177.75 | 0.006243 |
ORF1ab/nsp4 | 132 | I132F | Atc | Ttc | 5 | 5 | All | 0.000001 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 5 | 5 | AY.107 | 0.00233 |
ORF1ab/nsp4 | 132 | I132L | Atc | Ctc | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 5 | 5 | AY.120 | 0.000186 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 5 | 5 | AY.35 | 0.001165 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 5 | 5 | B.1.1.316 | 0.004625 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 5 | 5 | B.1.177.4 | 0.001055 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 5 | 5 | P.2 | 0.000933 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | AY.110 | 0.000451 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 3 | 4 | AY.44 | 0.000018 |
ORF1ab/nsp4 | 132 | I132T | aTC | aCA | 1 | 4 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.1.186 | 0.013746 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.127 | 0.008791 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.177.21 | 0.000306 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.177.7 | 0.000659 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.361 | 0.005155 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.416.1 | 0.00625 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.422 | 0.003249 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.453 | 0.012945 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 4 | 4 | B.1.576 | 0.003626 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp4 | 132 | I132N | aTc | aAc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 132 | I132del1 | Atc | -tc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 132 | I132K | aTC | aAA | 3 | 3 | All | 0.000001 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | AY.30 | 0.001187 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | AY.63 | 0.001161 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | B.1.1.329 | 0.011538 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | B.1.177.51 | 0.013699 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | B.1.311 | 0.000824 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | B.1.409 | 0.002344 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 3 | 3 | P.1.15 | 0.000697 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | A | 0.000774 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 2 | A.2.3 | 0.004739 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 2 | A.2.3 | 0.004739 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | A.24 | 0.142857 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.38 | 0.000999 |
ORF1ab/nsp4 | 132 | I132M | atC | atG | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 132 | I132L | Atc | Ctc | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 2 | 2 | AZ.2 | 0.001642 |
ORF1ab/nsp4 | 132 | I132L | Atc | Ctc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 132 | I132K | aTC | aAA | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.1.225 | 0.014388 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 2 | 2 | B.1.1.311 | 0.000716 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.1.322 | 0.017544 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.1.359 | 0.055556 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp4 | 132 | I132del1 | Atc | -tc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.128 | 0.001271 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 2 | 2 | B.1.177.16 | 0.001329 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 2 | 2 | B.1.177.63 | 0.005405 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 2 | 2 | B.1.177.87 | 0.001456 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.214.2 | 0.001199 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.371 | 0.002245 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.420 | 0.020833 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 2 | 2 | B.1.574 | 0.004301 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | C.11 | 0.021277 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp4 | 132 | I132F | Atc | Ttc | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | A.12 | 0.166667 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AG.1 | 0.066667 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AK.1 | 0.012658 |
ORF1ab/nsp4 | 132 | I132R | aTC | aGA | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 132 | I132del2 | ATc | --c | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 132 | I132H | ATc | CAc | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 132 | I132G | ATc | GGc | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 132 | I132S | aTc | aGc | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AS.1 | 0.009524 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp4 | 132 | I132M | atC | atG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 132 | I132T | aTC | aCA | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 132 | I132L | Atc | Ctc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 132 | I132N | aTc | aAc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 132 | I132N | aTc | aAc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 132 | I132M | atC | atG | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 132 | I132K | aTC | aAA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 132 | I132N | aTc | aAc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp4 | 132 | I132H | ATc | CAc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp4 | 132 | I132del1 | Atc | -tc | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 132 | I132F | Atc | Ttc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 132 | I132M | atC | atG | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp4 | 132 | I132F | Atc | Ttc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 132 | I132G | ATc | GGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 132 | I132F | Atc | Ttc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp4 | 132 | I132R | aTC | aGA | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.267 | 0.010101 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 132 | I132del2 | ATc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 132 | I132M | atC | atG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 132 | I132F | Atc | Ttc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.119 | 0.010526 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.160.25 | 0.011111 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.177.76 | 0.002494 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 1 | B.1.222 | 0.001692 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.308 | 0.034483 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.36.26 | 0.002857 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp4 | 132 | I132I | atC | atA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp4 | 132 | I132L | Atc | Ctc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.444 | 0.015873 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.508 | 0.025641 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.523 | 0.002451 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.610 | 0.003546 |
ORF1ab/nsp4 | 132 | I132S | aTc | aGc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp4 | 132 | I132M | atC | atG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | B.56 | 0.028571 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | C.1.2 | 0.004255 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | C.30 | 0.001727 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp4 | 132 | I132T | aTc | aCc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp4 | 132 | I132V | Atc | Gtc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp4 | 132 | I132del | ATC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp4 | 132 | I132I | atC | atT | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|