CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 132

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4132I132II2895IsynatCatT34503343490.9955378948-8950
ORF1ab/nsp4132I132II2895IsynatCatA345031540.004463388948-8950
ORF1ab/nsp4132I132VI2895VnonsynAtcGtc1861850.9946248948-8950
ORF1ab/nsp4132I132VI2895VnonsynAtCGtG18610.005376348948-8950
ORF1ab/nsp4132I132delI2895deldelATC---15715718948-8950
ORF1ab/nsp4132I132TI2895TnonsynaTcaCc1571550.9872618948-8950
ORF1ab/nsp4132I132TI2895TnonsynaTCaCA15720.01273898948-8950
ORF1ab/nsp4132I132LI2895LnonsynAtcCtc464618948-8950
ORF1ab/nsp4132I132MI2895MnonsynatCatG7718948-8950
ORF1ab/nsp4132I132FI2895FnonsynAtcTtc5518948-8950
ORF1ab/nsp4132I132KI2895KnonsynaTCaAA3318948-8950
ORF1ab/nsp4132I132del1I2895del1delAtc-tc3318948-8950
ORF1ab/nsp4132I132NI2895NnonsynaTcaAc3318948-8950
ORF1ab/nsp4132I132RI2895RnonsynaTCaGA1118948-8950
ORF1ab/nsp4132I132GI2895GnonsynATcGGc1118948-8950
ORF1ab/nsp4132I132SI2895SnonsynaTcaGc1118948-8950
ORF1ab/nsp4132I132del2I2895del2delATc--c1118948-8950
ORF1ab/nsp4132I132HI2895HnonsynATcCAc1118948-8950

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4132I132IatCatT3434934503All0.00657
ORF1ab/nsp4132I132IatCatA15434503All0.000029
ORF1ab/nsp4132I132IatCatT2800428007B.1.1.70.02507
ORF1ab/nsp4132I132IatCatA328007B.1.1.70.000003
ORF1ab/nsp4132I132IatCatT611612AY.40.000951
ORF1ab/nsp4132I132IatCatA1612AY.40.000002
ORF1ab/nsp4132I132IatCatT457457AY.280.863894
ORF1ab/nsp4132I132IatCatT312315B.1.617.20.001175
ORF1ab/nsp4132I132IatCatA3315B.1.617.20.000011
ORF1ab/nsp4132I132IatCatT265266AY.440.001613
ORF1ab/nsp4132I132IatCatA1266AY.440.000006
ORF1ab/nsp4132I132IatCatT259261AY.1030.001608
ORF1ab/nsp4132I132IatCatA2261AY.1030.000012
ORF1ab/nsp4132I132IatCatT240240D.20.01801
ORF1ab/nsp4132I132IatCatT218218B.1.2350.549118
ORF1ab/nsp4132I132IatCatT215215B.1.4080.793358
ORF1ab/nsp4132I132IatCatT200208AY.430.000886
ORF1ab/nsp4132I132IatCatA8208AY.430.000035
ORF1ab/nsp4132I132IatCatT193193A.30.404612
ORF1ab/nsp4132I132IatCatT191191Q.80.031497
ORF1ab/nsp4132I132VAtcGtc185186All0.000035
ORF1ab/nsp4132I132VAtCGtG1186All0
ORF1ab/nsp4132I132IatCatT142173AY.30.001412
ORF1ab/nsp4132I132IatCatA31173AY.30.000308
ORF1ab/nsp4132I132IatCatT171172B.1.20.001506
ORF1ab/nsp4132I132IatCatA1172B.1.20.000009
ORF1ab/nsp4132I132IatCatT164165P.10.002584
ORF1ab/nsp4132I132IatCatA1165P.10.000016
ORF1ab/nsp4132I132delATC---157157All0.00003
ORF1ab/nsp4132I132TaTcaCc155157All0.00003
ORF1ab/nsp4132I132TaTCaCA2157All0
ORF1ab/nsp4132I132IatCatT140143B.10.001282
ORF1ab/nsp4132I132IatCatA3143B.10.000027
ORF1ab/nsp4132I132IatCatT124125B.1.10.002249
ORF1ab/nsp4132I132IatCatA1125B.1.10.000018
ORF1ab/nsp4132I132IatCatT113113AY.1020.002996
ORF1ab/nsp4132I132IatCatT105105B.1.3510.003121
ORF1ab/nsp4132I132IatCatT9999B.1.5260.002327
ORF1ab/nsp4132I132IatCatT9595B.1.177.620.11323
ORF1ab/nsp4132I132IatCatT8787B.1.1.10.028422
ORF1ab/nsp4132I132IatCatT8687Q.10.010864
ORF1ab/nsp4132I132IatCatA187Q.10.000126
ORF1ab/nsp4132I132IatCatT8484B.1.1770.001106
ORF1ab/nsp4132I132IatCatT7678AY.250.000457
ORF1ab/nsp4132I132IatCatA278AY.250.000012
ORF1ab/nsp4132I132IatCatT7777AY.50.00159
ORF1ab/nsp4132I132delATC---7575B.1.1.70.000067
ORF1ab/nsp4132I132IatCatT6666B.1.5960.005751
ORF1ab/nsp4132I132IatCatT6565B.1.6370.00475
ORF1ab/nsp4132I132VAtcGtc5859B.1.1.70.000052
ORF1ab/nsp4132I132VAtCGtG159B.1.1.70.000001
ORF1ab/nsp4132I132IatCatT5858B.1.1.2910.043059
ORF1ab/nsp4132I132IatCatT5858P.50.794521
ORF1ab/nsp4132I132IatCatT5151B.1.2800.364286
ORF1ab/nsp4132I132IatCatT5151B.1.6210.004514
ORF1ab/nsp4132I132LAtcCtc4646All0.000009
ORF1ab/nsp4132I132VAtcGtc4646B.1.5260.001081
ORF1ab/nsp4132I132IatCatA4343AY.120.10.013804
ORF1ab/nsp4132I132IatCatT4040B.1.1.3180.01207
ORF1ab/nsp4132I132IatCatT3737AY.390.000914
ORF1ab/nsp4132I132IatCatT3737B.1.1.5190.001469
ORF1ab/nsp4132I132IatCatT3737B.1.1600.001154
ORF1ab/nsp4132I132IatCatT3636AY.290.000568
ORF1ab/nsp4132I132TaTcaCc3131AY.250.000186
ORF1ab/nsp4132I132TaTcaCc3030B.1.1.70.000027
ORF1ab/nsp4132I132IatCatT2828AY.260.000793
ORF1ab/nsp4132I132IatCatT2828B.1.4290.000659
ORF1ab/nsp4132I132VAtcGtc2828P.1.170.004529
ORF1ab/nsp4132I132IatCatA2126AY.1180.001316
ORF1ab/nsp4132I132IatCatT526AY.1180.000313
ORF1ab/nsp4132I132IatCatT2626AY.4.20.000564
ORF1ab/nsp4132I132IatCatT2525AY.500.019984
ORF1ab/nsp4132I132LAtcCtc2525B.1.20.00022
ORF1ab/nsp4132I132IatCatA2525B.1.4050.308642
ORF1ab/nsp4132I132IatCatT2424AY.540.002288
ORF1ab/nsp4132I132IatCatT2424B.1.5320.149068
ORF1ab/nsp4132I132IatCatT2323AY.5.40.006364
ORF1ab/nsp4132I132IatCatT2323B.1.2580.001531
ORF1ab/nsp4132I132IatCatT2222AY.680.006022
ORF1ab/nsp4132I132IatCatT2222B.1.160.280.064327
ORF1ab/nsp4132I132IatCatT2121B.1.3200.026152
ORF1ab/nsp4132I132TaTcaCc2020AY.260.000566
ORF1ab/nsp4132I132IatCatT1819AY.610.001886
ORF1ab/nsp4132I132IatCatA119AY.610.000105
ORF1ab/nsp4132I132IatCatT1818AY.470.00056
ORF1ab/nsp4132I132IatCatT1717AY.420.000684
ORF1ab/nsp4132I132IatCatT1717AY.750.000952
ORF1ab/nsp4132I132IatCatT1617AY.9.20.000588
ORF1ab/nsp4132I132IatCatA117AY.9.20.000037
ORF1ab/nsp4132I132IatCatT1717B.1.1.2650.053628
ORF1ab/nsp4132I132IatCatT1717B.1.4270.000858
ORF1ab/nsp4132I132IatCatT1616B.1.160.270.242424
ORF1ab/nsp4132I132TaTcaCc1515AY.40.000023
ORF1ab/nsp4132I132IatCatT1414B.1.1.3970.031532
ORF1ab/nsp4132I132IatCatT1314P.1.140.000621
ORF1ab/nsp4132I132IatCatA114P.1.140.000048
ORF1ab/nsp4132I132IatCatT1313B.1.1.3060.005699
ORF1ab/nsp4132I132IatCatT1313B.1.110.30.009339
ORF1ab/nsp4132I132IatCatT1313B.1.930.012138
ORF1ab/nsp4132I132IatCatT1212AY.1170.001014
ORF1ab/nsp4132I132IatCatT1212AY.200.000466
ORF1ab/nsp4132I132IatCatT1212AY.360.001779
ORF1ab/nsp4132I132delATC---1212AY.40.000019
ORF1ab/nsp4132I132IatCatT1212B.1.1.2220.002448
ORF1ab/nsp4132I132IatCatT1212C.350.009288
ORF1ab/nsp4132I132IatCatT1111AY.320.005857
ORF1ab/nsp4132I132IatCatT1111AY.39.10.000436
ORF1ab/nsp4132I132IatCatT1111AY.98.10.000533
ORF1ab/nsp4132I132IatCatT1010AY.330.000668
ORF1ab/nsp4132I132IatCatT1010AY.460.001041
ORF1ab/nsp4132I132IatCatT1010AY.90.000676
ORF1ab/nsp4132I132LAtcCtc1010B.1.1.2220.00204
ORF1ab/nsp4132I132IatCatT1010B.1.177.690.014837
ORF1ab/nsp4132I132IatCatT1010B.1.2210.00071
ORF1ab/nsp4132I132IatCatT99AY.350.002097
ORF1ab/nsp4132I132IatCatT99AY.75.10.001623
ORF1ab/nsp4132I132IatCatT99B.1.177.440.00467
ORF1ab/nsp4132I132IatCatT99B.1.2430.000626
ORF1ab/nsp4132I132VAtcGtc99B.1.617.20.000034
ORF1ab/nsp4132I132IatCatT99R.10.00081
ORF1ab/nsp4132I132IatCatT88AY.1190.000282
ORF1ab/nsp4132I132IatCatT88AY.46.40.001316
ORF1ab/nsp4132I132delATC---88B.1.1770.000105
ORF1ab/nsp4132I132TaTcaCc88B.1.617.20.00003
ORF1ab/nsp4132I132IatCatT88W.30.042105
ORF1ab/nsp4132I132MatCatG77All0.000001
ORF1ab/nsp4132I132IatCatT77AY.230.000488
ORF1ab/nsp4132I132delATC---77AY.430.000031
ORF1ab/nsp4132I132IatCatT77B.1.1.2140.000388
ORF1ab/nsp4132I132IatCatT77B.1.4020.068627
ORF1ab/nsp4132I132IatCatT77B.1.621.10.003541
ORF1ab/nsp4132I132IatCatT77C.370.000812
ORF1ab/nsp4132I132VAtcGtc66AY.1030.000037
ORF1ab/nsp4132I132IatCatT66AY.340.000582
ORF1ab/nsp4132I132TaTcaCc66AY.390.000148
ORF1ab/nsp4132I132IatCatT66AY.46.60.000433
ORF1ab/nsp4132I132IatCatT66B0.000767
ORF1ab/nsp4132I132IatCatT66B.1.177.750.006243
ORF1ab/nsp4132I132FAtcTtc55All0.000001
ORF1ab/nsp4132I132IatCatT55AY.1000.00023
ORF1ab/nsp4132I132IatCatT55AY.1070.00233
ORF1ab/nsp4132I132LAtcCtc55AY.1200.000186
ORF1ab/nsp4132I132IatCatT55AY.1200.000186
ORF1ab/nsp4132I132TaTcaCc55AY.350.001165
ORF1ab/nsp4132I132IatCatT55B.1.1.3160.004625
ORF1ab/nsp4132I132IatCatT55B.1.177.40.001055
ORF1ab/nsp4132I132IatCatT55B.1.177.810.000947
ORF1ab/nsp4132I132IatCatT55P.1.120.00242
ORF1ab/nsp4132I132IatCatT55P.20.000933
ORF1ab/nsp4132I132VAtcGtc44AY.1000.000184
ORF1ab/nsp4132I132IatCatT44AY.1100.000451
ORF1ab/nsp4132I132IatCatT44AY.1130.00057
ORF1ab/nsp4132I132delATC---44AY.4.50.00043
ORF1ab/nsp4132I132TaTcaCc34AY.440.000018
ORF1ab/nsp4132I132TaTCaCA14AY.440.000006
ORF1ab/nsp4132I132IatCatT44AY.450.000487
ORF1ab/nsp4132I132IatCatT44AY.590.002119
ORF1ab/nsp4132I132IatCatT44AY.850.001709
ORF1ab/nsp4132I132IatCatT44AY.9.10.000335
ORF1ab/nsp4132I132VAtcGtc44B.10.000037
ORF1ab/nsp4132I132IatCatT44B.1.1.1860.013746
ORF1ab/nsp4132I132IatCatT44B.1.1.500.002716
ORF1ab/nsp4132I132IatCatT44B.1.1270.008791
ORF1ab/nsp4132I132IatCatT44B.1.177.210.000306
ORF1ab/nsp4132I132IatCatT44B.1.177.70.000659
ORF1ab/nsp4132I132IatCatT44B.1.3610.005155
ORF1ab/nsp4132I132IatCatT44B.1.416.10.00625
ORF1ab/nsp4132I132IatCatT44B.1.4220.003249
ORF1ab/nsp4132I132IatCatT44B.1.4530.012945
ORF1ab/nsp4132I132IatCatT44B.1.466.20.001565
ORF1ab/nsp4132I132IatCatT44B.1.5760.003626
ORF1ab/nsp4132I132IatCatT33A.2.50.001497
ORF1ab/nsp4132I132NaTcaAc33All0.000001
ORF1ab/nsp4132I132del1Atc-tc33All0.000001
ORF1ab/nsp4132I132KaTCaAA33All0.000001
ORF1ab/nsp4132I132TaTcaCc33AY.1030.000019
ORF1ab/nsp4132I132IatCatT33AY.29.10.000662
ORF1ab/nsp4132I132IatCatT33AY.300.001187
ORF1ab/nsp4132I132IatCatT33AY.4.2.10.000447
ORF1ab/nsp4132I132IatCatT33AY.4.50.000322
ORF1ab/nsp4132I132TaTcaCc33AY.430.000013
ORF1ab/nsp4132I132VAtcGtc33AY.470.000093
ORF1ab/nsp4132I132IatCatT33AY.630.001161
ORF1ab/nsp4132I132IatCatT33AY.980.000237
ORF1ab/nsp4132I132IatCatT33AY.99.20.000276
ORF1ab/nsp4132I132IatCatT33B.1.1.250.001706
ORF1ab/nsp4132I132IatCatT33B.1.1.3290.011538
ORF1ab/nsp4132I132IatCatT33B.1.1.3690.001339
ORF1ab/nsp4132I132IatCatT33B.1.1390.002199
ORF1ab/nsp4132I132delATC---33B.1.177.40.000633
ORF1ab/nsp4132I132IatCatT33B.1.177.510.013699
ORF1ab/nsp4132I132IatCatT33B.1.177.860.00055
ORF1ab/nsp4132I132IatCatT33B.1.2390.003663
ORF1ab/nsp4132I132IatCatT33B.1.3110.000824
ORF1ab/nsp4132I132IatCatT33B.1.4090.002344
ORF1ab/nsp4132I132IatCatT33C.360.002732
ORF1ab/nsp4132I132TaTcaCc33C.370.000348
ORF1ab/nsp4132I132IatCatT33P.1.150.000697
ORF1ab/nsp4132I132TaTcaCc33Q.80.000495
ORF1ab/nsp4132I132IatCatT22A0.000774
ORF1ab/nsp4132I132delATC---22A.20.001324
ORF1ab/nsp4132I132IatCatT12A.2.30.004739
ORF1ab/nsp4132I132IatCatA12A.2.30.004739
ORF1ab/nsp4132I132IatCatT22A.240.142857
ORF1ab/nsp4132I132IatCatT22AY.10.000791
ORF1ab/nsp4132I132IatCatT22AY.1080.002205
ORF1ab/nsp4132I132IatCatT22AY.1110.000366
ORF1ab/nsp4132I132TaTcaCc22AY.1130.000285
ORF1ab/nsp4132I132IatCatT22AY.130.000322
ORF1ab/nsp4132I132IatCatT22AY.140.000176
ORF1ab/nsp4132I132IatCatT22AY.16.10.00094
ORF1ab/nsp4132I132VAtcGtc22AY.200.000078
ORF1ab/nsp4132I132delATC---22AY.250.000012
ORF1ab/nsp4132I132VAtcGtc22AY.30.00002
ORF1ab/nsp4132I132IatCatT22AY.34.10.00102
ORF1ab/nsp4132I132IatCatT22AY.380.000999
ORF1ab/nsp4132I132MatCatG22AY.40.000003
ORF1ab/nsp4132I132LAtcCtc22AY.430.000009
ORF1ab/nsp4132I132IatCatT22AY.510.001818
ORF1ab/nsp4132I132IatCatT22AY.550.001835
ORF1ab/nsp4132I132IatCatT22AY.60.000082
ORF1ab/nsp4132I132IatCatT22AY.650.001066
ORF1ab/nsp4132I132IatCatT22AY.710.00095
ORF1ab/nsp4132I132IatCatT22AY.920.000575
ORF1ab/nsp4132I132IatCatT22AY.990.002099
ORF1ab/nsp4132I132VAtcGtc22AY.99.20.000184
ORF1ab/nsp4132I132VAtcGtc22AZ.20.001642
ORF1ab/nsp4132I132LAtcCtc22B.10.000018
ORF1ab/nsp4132I132KaTCaAA22B.10.000018
ORF1ab/nsp4132I132IatCatT22B.1.1.2250.014388
ORF1ab/nsp4132I132IatCatT22B.1.1.2630.003115
ORF1ab/nsp4132I132IatCatT22B.1.1.2840.000215
ORF1ab/nsp4132I132delATC---22B.1.1.3110.000716
ORF1ab/nsp4132I132IatCatT22B.1.1.3220.017544
ORF1ab/nsp4132I132IatCatT22B.1.1.3590.055556
ORF1ab/nsp4132I132IatCatT22B.1.1.370.000386
ORF1ab/nsp4132I132IatCatT22B.1.1.390.001019
ORF1ab/nsp4132I132del1Atc-tc22B.1.1.70.000002
ORF1ab/nsp4132I132IatCatT22B.1.1280.001271
ORF1ab/nsp4132I132delATC---22B.1.177.160.001329
ORF1ab/nsp4132I132delATC---22B.1.177.180.00232
ORF1ab/nsp4132I132IatCatT22B.1.177.180.00232
ORF1ab/nsp4132I132delATC---22B.1.177.630.005405
ORF1ab/nsp4132I132delATC---22B.1.177.870.001456
ORF1ab/nsp4132I132IatCatT22B.1.1890.008584
ORF1ab/nsp4132I132IatCatT22B.1.214.20.001199
ORF1ab/nsp4132I132IatCatT22B.1.2340.000264
ORF1ab/nsp4132I132IatCatT22B.1.3490.00143
ORF1ab/nsp4132I132IatCatT22B.1.351.20.000605
ORF1ab/nsp4132I132IatCatT22B.1.3710.002245
ORF1ab/nsp4132I132IatCatT22B.1.4200.020833
ORF1ab/nsp4132I132IatCatT22B.1.5250.000226
ORF1ab/nsp4132I132TaTcaCc22B.1.5260.000047
ORF1ab/nsp4132I132TaTcaCc22B.1.5740.004301
ORF1ab/nsp4132I132IatCatT22B.1.5750.000607
ORF1ab/nsp4132I132IatCatT22B.1.617.10.000258
ORF1ab/nsp4132I132delATC---22B.1.617.20.000008
ORF1ab/nsp4132I132IatCatT22C.110.021277
ORF1ab/nsp4132I132IatCatT22P.1.170.000324
ORF1ab/nsp4132I132IatCatT22P.1.70.000639
ORF1ab/nsp4132I132FAtcTtc110.055556
ORF1ab/nsp4132I132IatCatT11A.120.166667
ORF1ab/nsp4132I132IatCatT11A.20.000662
ORF1ab/nsp4132I132IatCatT11A.23.10.000704
ORF1ab/nsp4132I132IatCatT11AD.20.000219
ORF1ab/nsp4132I132IatCatT11AE.80.000489
ORF1ab/nsp4132I132IatCatT11AG.10.066667
ORF1ab/nsp4132I132delATC---11AH.30.003802
ORF1ab/nsp4132I132IatCatT11AK.10.012658
ORF1ab/nsp4132I132RaTCaGA11All0
ORF1ab/nsp4132I132del2ATc--c11All0
ORF1ab/nsp4132I132HATcCAc11All0
ORF1ab/nsp4132I132GATcGGc11All0
ORF1ab/nsp4132I132SaTcaGc11All0
ORF1ab/nsp4132I132IatCatT11AS.10.009524
ORF1ab/nsp4132I132IatCatT11AU.30.00211
ORF1ab/nsp4132I132IatCatT11AY.100.00053
ORF1ab/nsp4132I132MatCatG11AY.1030.000006
ORF1ab/nsp4132I132IatCatT11AY.1040.001984
ORF1ab/nsp4132I132VAtcGtc11AY.1060.000335
ORF1ab/nsp4132I132TaTcaCc11AY.1080.001103
ORF1ab/nsp4132I132IatCatT11AY.1090.00074
ORF1ab/nsp4132I132delATC---11AY.1110.000183
ORF1ab/nsp4132I132IatCatT11AY.116.10.000311
ORF1ab/nsp4132I132TaTcaCc11AY.116.10.000311
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