CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 128

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4128A128VA2891VnonsyngCagTa220722030.9981888936-8938
ORF1ab/nsp4128A128VA2891VnonsyngCAgTG220720.0009062088936-8938
ORF1ab/nsp4128A128VA2891VnonsyngCAgTT220710.0004531048936-8938
ORF1ab/nsp4128A128VA2891VnonsyngCAgTC220710.0004531048936-8938
ORF1ab/nsp4128A128TA2891TnonsynGcaAca116011590.9991388936-8938
ORF1ab/nsp4128A128TA2891TnonsynGcAAcG116010.0008620698936-8938
ORF1ab/nsp4128A128delA2891deldelGCA---17517518936-8938
ORF1ab/nsp4128A128AA2891AsyngcAgcG144970.6736118936-8938
ORF1ab/nsp4128A128AA2891AsyngcAgcT144250.1736118936-8938
ORF1ab/nsp4128A128AA2891AsyngcAgcC144220.1527788936-8938
ORF1ab/nsp4128A128SA2891SnonsynGcaTca46430.9347838936-8938
ORF1ab/nsp4128A128SA2891SnonsynGcATcT4620.04347838936-8938
ORF1ab/nsp4128A128SA2891SnonsynGcATcC4610.02173918936-8938
ORF1ab/nsp4128A128EA2891EnonsyngCagAa8818936-8938
ORF1ab/nsp4128A128PA2891PnonsynGcaCca7718936-8938
ORF1ab/nsp4128A128IA2891InonsynGCaATa6618936-8938
ORF1ab/nsp4128A128del1A2891del1delGca-ca420.58936-8938
ORF1ab/nsp4128A128del1A2891del1delgcAgc-410.258936-8938
ORF1ab/nsp4128A128del1A2891del1delGCA-TG410.258936-8938
ORF1ab/nsp4128A128GA2891GnonsyngCagGa3318936-8938
ORF1ab/nsp4128A128FA2891FnonsynGCATTT320.6666678936-8938
ORF1ab/nsp4128A128FA2891FnonsynGCATTC310.3333338936-8938
ORF1ab/nsp4128A128del2A2891del2delGCa--a2218936-8938
ORF1ab/nsp4128A128LA2891LnonsynGCaTTa2218936-8938
ORF1ab/nsp4128A128XA2891XnonsynGCaTGa1118936-8938
ORF1ab/nsp4128A128MA2891MnonsynGCAATG1118936-8938

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4128A128VgCagTa22032207All0.000421
ORF1ab/nsp4128A128VgCAgTG22207All0
ORF1ab/nsp4128A128VgCAgTT12207All0
ORF1ab/nsp4128A128VgCAgTC12207All0
ORF1ab/nsp4128A128TGcaAca11591160All0.000222
ORF1ab/nsp4128A128TGcAAcG11160All0
ORF1ab/nsp4128A128TGcaAca582582AY.40.000906
ORF1ab/nsp4128A128VgCagTa496496B.1.1.70.000444
ORF1ab/nsp4128A128TGcaAca205205AY.1110.037546
ORF1ab/nsp4128A128delGCA---175175All0.000033
ORF1ab/nsp4128A128VgCagTa175175B.1.36.360.105358
ORF1ab/nsp4128A128AgcAgcG97144All0.000019
ORF1ab/nsp4128A128AgcAgcT25144All0.000005
ORF1ab/nsp4128A128AgcAgcC22144All0.000004
ORF1ab/nsp4128A128TGcaAca126126B.1.36.330.954545
ORF1ab/nsp4128A128VgCagTa123123B.1.20.001083
ORF1ab/nsp4128A128VgCagTa105106AY.40.000163
ORF1ab/nsp4128A128VgCAgTG1106AY.40.000002
ORF1ab/nsp4128A128delGCA---8383B.1.1.70.000074
ORF1ab/nsp4128A128VgCagTa7878AY.1080.085998
ORF1ab/nsp4128A128VgCagTa6969AY.1030.000428
ORF1ab/nsp4128A128TGcaAca6060AY.1030.000373
ORF1ab/nsp4128A128VgCagTa5959B.10.00054
ORF1ab/nsp4128A128VgCagTa5454B.1.617.20.000203
ORF1ab/nsp4128A128VgCagTa4949B.1.1770.000645
ORF1ab/nsp4128A128SGcaTca4346All0.000008
ORF1ab/nsp4128A128SGcATcT246All0
ORF1ab/nsp4128A128SGcATcC146All0
ORF1ab/nsp4128A128VgCagTa4343B.1.1.3180.012975
ORF1ab/nsp4128A128VgCagTa4343P.10.000677
ORF1ab/nsp4128A128VgCagTa3636AY.250.000217
ORF1ab/nsp4128A128TGcaAca3636B.1.5170.015371
ORF1ab/nsp4128A128VgCagTa3535AZ.20.028736
ORF1ab/nsp4128A128TGcaAca3434B.1.1.70.00003
ORF1ab/nsp4128A128VgCagTa3333AY.1020.000875
ORF1ab/nsp4128A128VgCagTa3333AY.90.002231
ORF1ab/nsp4128A128VgCagTa3333B.1.1600.001029
ORF1ab/nsp4128A128VgCagTa3333B.1.177.860.006054
ORF1ab/nsp4128A128VgCagTa3131AY.440.000189
ORF1ab/nsp4128A128VgCagTa2727AF.11
ORF1ab/nsp4128A128VgCagTa2727AY.30.000269
ORF1ab/nsp4128A128AgcAgcG2026AY.40.000031
ORF1ab/nsp4128A128AgcAgcC526AY.40.000008
ORF1ab/nsp4128A128AgcAgcT126AY.40.000002
ORF1ab/nsp4128A128VgCagTa2424B.1.10.000435
ORF1ab/nsp4128A128VgCagTa2323B.1.3510.000684
ORF1ab/nsp4128A128VgCagTa2222AY.470.000684
ORF1ab/nsp4128A128AgcAgcG1122B.1.1.70.00001
ORF1ab/nsp4128A128AgcAgcT1122B.1.1.70.00001
ORF1ab/nsp4128A128TGcaAca2222B.1.617.20.000083
ORF1ab/nsp4128A128VgCagTa2020AY.430.000089
ORF1ab/nsp4128A128VgCagTa2020B.1.1.2140.001109
ORF1ab/nsp4128A128VgCagTa1919B.1.3620.029276
ORF1ab/nsp4128A128AgcAgcG1618AY.1030.000099
ORF1ab/nsp4128A128AgcAgcC218AY.1030.000012
ORF1ab/nsp4128A128VgCagTa1818AY.4.20.00039
ORF1ab/nsp4128A128TGcaAca1818AY.430.00008
ORF1ab/nsp4128A128VgCagTa1717B.1.5260.0004
ORF1ab/nsp4128A128delGCA---1515AY.40.000023
ORF1ab/nsp4128A128VgCagTa1414AY.260.000396
ORF1ab/nsp4128A128VgCagTa1414AY.99.20.00129
ORF1ab/nsp4128A128TGcaAca1313B.1.4270.000656
ORF1ab/nsp4128A128VgCagTa1313B.1.5250.001471
ORF1ab/nsp4128A128VgCagTa1212AY.390.000297
ORF1ab/nsp4128A128VgCagTa1111AY.290.000174
ORF1ab/nsp4128A128VgCagTa1111AY.750.000616
ORF1ab/nsp4128A128VgCagTa1111B.1.2430.000765
ORF1ab/nsp4128A128VgCagTa1010B.1.1.5190.000397
ORF1ab/nsp4128A128delGCA---1010B.1.1770.000132
ORF1ab/nsp4128A128TGcaAca1010B.1.20.000088
ORF1ab/nsp4128A128VgCagTa1010C.370.001161
ORF1ab/nsp4128A128VgCagTa99B.1.2210.000639
ORF1ab/nsp4128A128VgCagTa99B.1.621.10.004552
ORF1ab/nsp4128A128EgCagAa88All0.000002
ORF1ab/nsp4128A128VgCagTa88AY.46.60.000578
ORF1ab/nsp4128A128VgCagTa88B.1.360.001167
ORF1ab/nsp4128A128VgCagTa470.222222
ORF1ab/nsp4128A128VgCAgTG170.055556
ORF1ab/nsp4128A128VgCAgTT170.055556
ORF1ab/nsp4128A128VgCAgTC170.055556
ORF1ab/nsp4128A128PGcaCca77All0.000001
ORF1ab/nsp4128A128VgCagTa77AY.50.000145
ORF1ab/nsp4128A128TGcaAca77B.1.6370.000512
ORF1ab/nsp4128A128IGCaATa66All0.000001
ORF1ab/nsp4128A128VgCagTa66AY.1190.000212
ORF1ab/nsp4128A128delGCA---66AY.4.50.000645
ORF1ab/nsp4128A128VgCagTa66AY.420.000241
ORF1ab/nsp4128A128delGCA---66AY.430.000027
ORF1ab/nsp4128A128VgCagTa66AY.9.20.00022
ORF1ab/nsp4128A128AgcAgcG66B.1.1600.000187
ORF1ab/nsp4128A128VgCagTa66B.1.4290.000141
ORF1ab/nsp4128A128VgCagTa66B.1.617.10.000774
ORF1ab/nsp4128A128VgCagTa66D.20.00045
ORF1ab/nsp4128A128VgCagTa55A0.001935
ORF1ab/nsp4128A128TGcaAca55AY.250.00003
ORF1ab/nsp4128A128TGcaAca55AY.440.00003
ORF1ab/nsp4128A128AgcAgcG55AY.470.000156
ORF1ab/nsp4128A128VgCagTa55AY.9.10.000419
ORF1ab/nsp4128A128SGcaTca55B.1.1.3480.003981
ORF1ab/nsp4128A128VgCagTa55B.1.1.630.001929
ORF1ab/nsp4128A128VgCagTa55B.1.177.350.003455
ORF1ab/nsp4128A128VgCagTa55B.1.177.40.001055
ORF1ab/nsp4128A128VgCagTa55B.1.2400.001078
ORF1ab/nsp4128A128SGcaTca55B.1.3510.000149
ORF1ab/nsp4128A128VgCagTa55B.1.6090.002397
ORF1ab/nsp4128A128AgcAgcG35B.1.617.20.000011
ORF1ab/nsp4128A128AgcAgcC25B.1.617.20.000008
ORF1ab/nsp4128A128VgCagTa55B.1.6210.000443
ORF1ab/nsp4128A128SGcaTca240.111111
ORF1ab/nsp4128A128SGcATcT140.055556
ORF1ab/nsp4128A128SGcATcC140.055556
ORF1ab/nsp4128A128del1Gca-ca24All0
ORF1ab/nsp4128A128del1GCA-TG14All0
ORF1ab/nsp4128A128del1gcAgc-14All0
ORF1ab/nsp4128A128VgCagTa44AY.1180.000251
ORF1ab/nsp4128A128VgCagTa44AY.1210.000541
ORF1ab/nsp4128A128SGcaTca44AY.200.000155
ORF1ab/nsp4128A128VgCagTa44AY.3.10.000341
ORF1ab/nsp4128A128IGCaATa44AY.40.000006
ORF1ab/nsp4128A128SGcaTca44AY.40.000006
ORF1ab/nsp4128A128VgCagTa44AY.590.002119
ORF1ab/nsp4128A128AgcAgcG44B.10.000037
ORF1ab/nsp4128A128AgcAgcG34B.1.10.000054
ORF1ab/nsp4128A128AgcAgcT14B.1.10.000018
ORF1ab/nsp4128A128VgCagTa44B.1.1.330.001684
ORF1ab/nsp4128A128VgCagTa44B.1.1.3480.003185
ORF1ab/nsp4128A128AgcAgcC34B.1.3510.000089
ORF1ab/nsp4128A128AgcAgcG14B.1.3510.00003
ORF1ab/nsp4128A128VgCagTa44B.1.5750.001214
ORF1ab/nsp4128A128SGcaTca44D.20.0003
ORF1ab/nsp4128A128TGcaAca44P.10.000063
ORF1ab/nsp4128A128AgcAgcC130.055556
ORF1ab/nsp4128A128AgcAgcT130.055556
ORF1ab/nsp4128A128AgcAgcG130.055556
ORF1ab/nsp4128A128GgCagGa33All0.000001
ORF1ab/nsp4128A128FGCATTT23All0
ORF1ab/nsp4128A128FGCATTC13All0
ORF1ab/nsp4128A128AgcAgcG33AY.1020.00008
ORF1ab/nsp4128A128VgCagTa33AY.16.10.00141
ORF1ab/nsp4128A128VgCagTa33AY.200.000117
ORF1ab/nsp4128A128VgCagTa33AY.230.000209
ORF1ab/nsp4128A128VgCagTa33AY.4.50.000322
ORF1ab/nsp4128A128SGcaTca33AY.440.000018
ORF1ab/nsp4128A128VgCagTa33AY.540.000286
ORF1ab/nsp4128A128VgCagTa33AY.680.000821
ORF1ab/nsp4128A128AgcAgcC33AY.75.10.000541
ORF1ab/nsp4128A128AgcAgcG33AY.9.10.000251
ORF1ab/nsp4128A128SGcaTca33B.10.000027
ORF1ab/nsp4128A128TGcaAca33B.10.000027
ORF1ab/nsp4128A128VgCagTa33B.1.1.1700.003741
ORF1ab/nsp4128A128VgCagTa33B.1.1.280.000934
ORF1ab/nsp4128A128VgCagTa33B.1.1.500.002037
ORF1ab/nsp4128A128PGcaCca33B.1.1.70.000003
ORF1ab/nsp4128A128delGCA---33B.1.177.40.000633
ORF1ab/nsp4128A128VgCagTa33B.1.177.520.005272
ORF1ab/nsp4128A128AgcAgcG33B.1.177.810.000568
ORF1ab/nsp4128A128VgCagTa33B.1.2600.010033
ORF1ab/nsp4128A128VgCagTa33B.1.36.220.003623
ORF1ab/nsp4128A128VgCagTa33B.1.3610.003866
ORF1ab/nsp4128A128VgCagTa33B.1.4080.01107
ORF1ab/nsp4128A128VgCagTa33B.1.5610.001191
ORF1ab/nsp4128A128VgCagTa33B.1.5820.001472
ORF1ab/nsp4128A128VgCagTa33B.1.6260.017143
ORF1ab/nsp4128A128VgCagTa33B.1.6370.000219
ORF1ab/nsp4128A128VgCagTa33C.110.031915
ORF1ab/nsp4128A128VgCagTa33P.1.170.000485
ORF1ab/nsp4128A128VgCagTa33Q.80.000495
ORF1ab/nsp4128A128LGCaTTa220.111111
ORF1ab/nsp4128A128TGcAAcG120.055556
ORF1ab/nsp4128A128FGCATTT120.055556
ORF1ab/nsp4128A128FGCATTC120.055556
ORF1ab/nsp4128A128TGcaAca120.055556
ORF1ab/nsp4128A128delGCA---22A.20.001324
ORF1ab/nsp4128A128VgCagTa22A.290.010638
ORF1ab/nsp4128A128VgCagTa22A.50.003846
ORF1ab/nsp4128A128LGCaTTa22All0
ORF1ab/nsp4128A128del2GCa--a22All0
ORF1ab/nsp4128A128VgCagTa22AU.30.004219
ORF1ab/nsp4128A128VgCagTa22AY.1000.000092
ORF1ab/nsp4128A128VgCagTa22AY.110.002677
ORF1ab/nsp4128A128VgCagTa22AY.1130.000285
ORF1ab/nsp4128A128AgcAgcT22AY.1170.000169
ORF1ab/nsp4128A128SGcaTca22AY.1170.000169
ORF1ab/nsp4128A128TGcaAca22AY.1190.000071
ORF1ab/nsp4128A128VgCagTa22AY.130.000322
ORF1ab/nsp4128A128TGcaAca22AY.130.000322
ORF1ab/nsp4128A128VgCagTa22AY.160.000759
ORF1ab/nsp4128A128delGCA---22AY.250.000012
ORF1ab/nsp4128A128AgcAgcG22AY.390.000049
ORF1ab/nsp4128A128GgCagGa22AY.4.40.000818
ORF1ab/nsp4128A128TGcaAca22AY.420.00008
ORF1ab/nsp4128A128VgCagTa22AY.450.000243
ORF1ab/nsp4128A128TGcaAca22AY.50.000041
ORF1ab/nsp4128A128VgCagTa22AY.530.000575
ORF1ab/nsp4128A128VgCagTa22AY.610.00021
ORF1ab/nsp4128A128VgCagTa22AY.740.000231
ORF1ab/nsp4128A128EgCagAa22B.10.000018
ORF1ab/nsp4128A128EgCagAa22B.1.10.000036
ORF1ab/nsp4128A128TGcaAca22B.1.10.000036
ORF1ab/nsp4128A128VgCagTa22B.1.1.1760.000879
ORF1ab/nsp4128A128TGcaAca22B.1.1.3070.005063
ORF1ab/nsp4128A128delGCA---22B.1.1.3110.000716
ORF1ab/nsp4128A128VgCagTa22B.1.1.3970.004505
ORF1ab/nsp4128A128VgCagTa22B.1.1.4340.000697
ORF1ab/nsp4128A128VgCagTa22B.1.1.4860.003155
ORF1ab/nsp4128A128VgCagTa22B.1.1.5250.010929
ORF1ab/nsp4128A128SGcaTca22B.1.1.70.000002
ORF1ab/nsp4128A128del1gcAgc-12B.1.1.70.000001
ORF1ab/nsp4128A128del1Gca-ca12B.1.1.70.000001
ORF1ab/nsp4128A128VgCagTa22B.1.1.700.000682
ORF1ab/nsp4128A128SGcaTca22B.1.1770.000026
ORF1ab/nsp4128A128PGcaCca22B.1.1770.000026
ORF1ab/nsp4128A128delGCA---22B.1.177.160.001329
ORF1ab/nsp4128A128delGCA---22B.1.177.170.001642
ORF1ab/nsp4128A128delGCA---22B.1.177.180.00232
ORF1ab/nsp4128A128VgCagTa22B.1.177.210.000153
ORF1ab/nsp4128A128VgCagTa22B.1.177.500.00939
ORF1ab/nsp4128A128delGCA---22B.1.177.870.001456
ORF1ab/nsp4128A128SGcaTca22B.1.20.000018
ORF1ab/nsp4128A128AgcAgcG22B.1.20.000018
ORF1ab/nsp4128A128AgcAgcC12B.1.2210.000071
ORF1ab/nsp4128A128AgcAgcG12B.1.2210.000071
ORF1ab/nsp4128A128VgCagTa22B.1.2580.000133
ORF1ab/nsp4128A128VgCagTa22B.1.258.170.000208
ORF1ab/nsp4128A128VgCagTa22B.1.36.290.001035
ORF1ab/nsp4128A128VgCagTa22B.1.4270.000101
ORF1ab/nsp4128A128VgCagTa22B.1.6120.005305
ORF1ab/nsp4128A128delGCA---22B.1.617.20.000008
ORF1ab/nsp4128A128VgCagTa22B.1.6200.001892
ORF1ab/nsp4128A128VgCagTa22C.2.10.013333
ORF1ab/nsp4128A128AgcAgcG22P.10.000032
ORF1ab/nsp4128A128VgCagTa22Q.10.000253
ORF1ab/nsp4128A128VgCagTa22Q.40.00091
ORF1ab/nsp4128A128AgcAgcG22R.10.00018
ORF1ab/nsp4128A128MGCAATG110.055556
ORF1ab/nsp4128A128IGCaATa110.055556
ORF1ab/nsp4128A128VgCagTa11A.10.000282
ORF1ab/nsp4128A128AgcAgcG11A.20.000662
ORF1ab/nsp4128A128VgCagTa11A.2.5.10.004808
ORF1ab/nsp4128A128VgCagTa11A.210.00277
ORF1ab/nsp4128A128VgCagTa11A.23.10.000704
ORF1ab/nsp4128A128VgCagTa11AD.20.000219
ORF1ab/nsp4128A128TGcaAca11AD.20.000219
ORF1ab/nsp4128A128VgCagTa11AE.80.000489
ORF1ab/nsp4128A128delGCA---11AH.30.003802
ORF1ab/nsp4128A128MGCAATG11All0
ORF1ab/nsp4128A128XGCaTGa11All0
ORF1ab/nsp4128A128VgCagTa11AY.1050.000643
ORF1ab/nsp4128A128PGcaCca11AY.1110.000183
ORF1ab/nsp4128A128VgCagTa11AY.1110.000183
ORF1ab/nsp4128A128delGCA---11AY.1110.000183
ORF1ab/nsp4128A128EgCagAa11AY.1190.000035
ORF1ab/nsp4128A128VgCagTa11AY.120.000316
ORF1ab/nsp4128A128SGcaTca11AY.1200.000037
ORF1ab/nsp4128A128PGcaCca11AY.1200.000037
ORF1ab/nsp4128A128delGCA---11AY.1200.000037
ORF1ab/nsp4128A128AgcAgcC11AY.120.20.001285
ORF1ab/nsp4128A128delGCA---11AY.190.00114
ORF1ab/nsp4128A128AgcAgcG11AY.200.000039
ORF1ab/nsp4128A128VgCagTa11AY.240.000431
ORF1ab/nsp4128A128AgcAgcG11AY.250.000006
ORF1ab/nsp4128A128EgCagAa11AY.250.000006
ORF1ab/nsp4128A128TGcaAca11AY.260.000028
ORF1ab/nsp4128A128GgCagGa11AY.290.000016
ORF1ab/nsp4128A128AgcAgcG11AY.290.000016
ORF1ab/nsp4128A128VgCagTa11AY.29.10.000221
ORF1ab/nsp4128A128AgcAgcT11AY.30.00001
ORF1ab/nsp4128A128SGcaTca11AY.30.00001
ORF1ab/nsp4128A128TGcaAca11AY.30.00001
ORF1ab/nsp4128A128VgCagTa11AY.320.000532
ORF1ab/nsp4128A128TGcaAca11AY.330.000067
ORF1ab/nsp4128A128VgCagTa11AY.340.000097
ORF1ab/nsp4128A128VgCagTa11AY.34.10.00051
ORF1ab/nsp4128A128VgCagTa11AY.350.000233
ORF1ab/nsp4128A128VgCagTa11AY.360.000148
ORF1ab/nsp4128A128VgCagTa11AY.39.10.00004
ORF1ab/nsp4128A128del2GCa--a11AY.40.000002
ORF1ab/nsp4128A128EgCagAa11AY.40.000002
ORF1ab/nsp4128A128TGcaAca11AY.4.2.10.000149
ORF1ab/nsp4128A128VgCagTa11AY.4.2.10.000149
ORF1ab/nsp4128A128AgcAgcG11AY.4.2.10.000149
ORF1ab/nsp4128A128AgcAgcT11AY.420.00004
ORF1ab/nsp4128A128AgcAgcT11AY.440.000006
ORF1ab/nsp4128A128TGcaAca11AY.450.000122
ORF1ab/nsp4128A128TGcaAca11AY.460.000104
ORF1ab/nsp4128A128VgCagTa11AY.46.30.000934
ORF1ab/nsp4128A128VgCagTa11AY.480.000465
ORF1ab/nsp4128A128delGCA---11AY.50.000021
ORF1ab/nsp4128A128AgcAgcT11AY.50.000021
ORF1ab/nsp4128A128TGcaAca11AY.530.000288
ORF1ab/nsp4128A128TGcaAca11AY.540.000095
ORF1ab/nsp4128A128VgCagTa11AY.60.000041
ORF1ab/nsp4128A128delGCA---11AY.600.000938
ORF1ab/nsp4128A128AgcAgcC11AY.610.000105
ORF1ab/nsp4128A128VgCagTa11AY.620.000436
ORF1ab/nsp4128A128delGCA---11AY.720.001361
ORF1ab/nsp4128A128TGcaAca11AY.750.000056
ORF1ab/nsp4128A128VgCagTa11AY.75.10.00018
ORF1ab/nsp4128A128VgCagTa11AY.840.000437
ORF1ab/nsp4128A128delGCA---11AY.90.000068
ORF1ab/nsp4128A128del1Gca-ca11AY.90.000068
ORF1ab/nsp4128A128delGCA---11AY.9.20.000037
ORF1ab/nsp4128A128TGcaAca11AY.920.000287
ORF1ab/nsp4128A128VgCagTa11AY.980.000079
ORF1ab/nsp4128A128EgCagAa11AY.980.000079
ORF1ab/nsp4128A128VgCagTa11AY.98.10.000048
ORF1ab/nsp4128A128delGCA---11AY.99.10.001553
ORF1ab/nsp4128A128AgcAgcG11AZ.30.00152
ORF1ab/nsp4128A128delGCA---11B.10.000009
ORF1ab/nsp4128A128delGCA---11B.1.10.000018
ORF1ab/nsp4128A128VgCagTa11B.1.1.1330.008475
ORF1ab/nsp4128A128VgCagTa11B.1.1.1530.001095
ORF1ab/nsp4128A128VgCagTa11B.1.1.2100.005714
ORF1ab/nsp4128A128AgcAgcT11B.1.1.2220.000204
ORF1ab/nsp4128A128delGCA---11B.1.1.2360.006897
ORF1ab/nsp4128A128VgCagTa11B.1.1.250.000569
ORF1ab/nsp4128A128VgCagTa11B.1.1.2580.003257
ORF1ab/nsp4128A128VgCagTa11B.1.1.2690.001353
ORF1ab/nsp4128A128VgCagTa11B.1.1.2820.011628
ORF1ab/nsp4128A128AgcAgcC11B.1.1.2940.001266
ORF1ab/nsp4128A128VgCagTa11B.1.1.3020.002075
ORF1ab/nsp4128A128delGCA---11B.1.1.3060.000438
ORF1ab/nsp4128A128delGCA---11B.1.1.3090.005848
ORF1ab/nsp4128A128VgCagTa11B.1.1.3110.000358
ORF1ab/nsp4128A128VgCagTa11B.1.1.3120.001912
ORF1ab/nsp4128A128TGcaAca11B.1.1.3160.000925
ORF1ab/nsp4128A128AgcAgcG11B.1.1.3170.000412
ORF1ab/nsp4128A128VgCagTa11B.1.1.3980.003226
ORF1ab/nsp4128A128delGCA---11B.1.1.4090.002833
ORF1ab/nsp4128A128VgCagTa11B.1.1.4400.011765
ORF1ab/nsp4128A128VgCagTa11B.1.1.4640.001473
ORF1ab/nsp4128A128VgCagTa11B.1.1.5170.006803
ORF1ab/nsp4128A128AgcAgcT11B.1.1.5190.00004
ORF1ab/nsp4128A128XGCaTGa11B.1.1.70.000001
ORF1ab/nsp4128A128VgCagTa11B.1.110.30.000718
ORF1ab/nsp4128A128VgCagTa11B.1.1470.000756
ORF1ab/nsp4128A128delGCA---11B.1.160.230.004831
ORF1ab/nsp4128A128del2GCa--a11B.1.1770.000013
ORF1ab/nsp4128A128delGCA---11B.1.177.100.000878
ORF1ab/nsp4128A128VgCagTa11B.1.177.160.000664
ORF1ab/nsp4128A128VgCagTa11B.1.177.170.000821
ORF1ab/nsp4128A128delGCA---11B.1.177.190.001431
ORF1ab/nsp4128A128VgCagTa11B.1.177.200.001517
ORF1ab/nsp4128A128delGCA---11B.1.177.210.000076
ORF1ab/nsp4128A128VgCagTa11B.1.177.330.001645
ORF1ab/nsp4128A128delGCA---11B.1.177.510.004566
ORF1ab/nsp4128A128VgCagTa11B.1.177.540.000606
ORF1ab/nsp4128A128VgCagTa11B.1.177.550.002331
ORF1ab/nsp4128A128delGCA---11B.1.177.550.002331
ORF1ab/nsp4128A128delGCA---11B.1.177.560.000668
ORF1ab/nsp4128A128delGCA---11B.1.177.580.001332
ORF1ab/nsp4128A128AgcAgcT11B.1.177.600.000218
ORF1ab/nsp4128A128VgCagTa11B.1.177.600.000218
ORF1ab/nsp4128A128delGCA---11B.1.177.630.002703
ORF1ab/nsp4128A128delGCA---11B.1.177.690.001484
ORF1ab/nsp4128A128VgCagTa11B.1.177.690.001484
ORF1ab/nsp4128A128SGcaTca11B.1.177.730.000566
ORF1ab/nsp4128A128AgcAgcT11B.1.177.750.001041
ORF1ab/nsp4128A128VgCagTa11B.1.177.750.001041
ORF1ab/nsp4128A128delGCA---11B.1.177.760.002494
ORF1ab/nsp4128A128VgCagTa11B.1.177.810.000189
ORF1ab/nsp4128A128delGCA---11B.1.177.810.000189
ORF1ab/nsp4128A128VgCagTa11B.1.177.820.000477
ORF1ab/nsp4128A128VgCagTa11B.1.177.870.000728
ORF1ab/nsp4128A128VgCagTa11B.1.2060.000816
ORF1ab/nsp4128A128TGcaAca11B.1.214.20.0006
ORF1ab/nsp4128A128SGcaTca11B.1.2210.000071
ORF1ab/nsp4128A128VgCagTa11B.1.230.006061
ORF1ab/nsp4128A128VgCagTa11B.1.2340.000132
ORF1ab/nsp4128A128delGCA---11B.1.258.110.000396
ORF1ab/nsp4128A128delGCA---11B.1.258.30.001675
ORF1ab/nsp4128A128VgCagTa11B.1.2650.001271
ORF1ab/nsp4128A128VgCagTa11B.1.3110.000275
ORF1ab/nsp4128A128delGCA---11B.1.36.170.000494
ORF1ab/nsp4128A128delGCA---11B.1.36.180.00042
ORF1ab/nsp4128A128VgCagTa11B.1.36.80.001
ORF1ab/nsp4128A128VgCagTa11B.1.3660.004878
ORF1ab/nsp4128A128TGcaAca11B.1.3910.001127
ORF1ab/nsp4128A128delGCA---11B.1.4150.014286
ORF1ab/nsp4128A128VgCagTa11B.1.4220.000812
ORF1ab/nsp4128A128AgcAgcC11B.1.4270.00005
ORF1ab/nsp4128A128VgCagTa11B.1.438.10.000107
ORF1ab/nsp4128A128VgCagTa11B.1.4520.013699
ORF1ab/nsp4128A128VgCagTa11B.1.4590.004082
ORF1ab/nsp4128A128VgCagTa11B.1.4710.002732
ORF1ab/nsp4128A128VgCagTa11B.1.4970.000315
ORF1ab/nsp4128A128VgCagTa11B.1.5510.00129
ORF1ab/nsp4128A128VgCagTa11B.1.5540.004405
ORF1ab/nsp4128A128AgcAgcT11B.1.5820.000491
ORF1ab/nsp4128A128VgCagTa11B.1.5870.001898
ORF1ab/nsp4128A128VgCagTa11B.1.5950.000261
ORF1ab/nsp4128A128VgCagTa11B.1.6000.005848
ORF1ab/nsp4128A128TGcaAca11B.1.617.10.000129
ORF1ab/nsp4128A128del1GCA-TG11B.1.617.20.000004
ORF1ab/nsp4128A128IGCaATa11B.1.617.20.000004
ORF1ab/nsp4128A128SGcaTca11B.1.617.20.000004
ORF1ab/nsp4128A128VgCagTa11B.1.6230.000536
ORF1ab/nsp4128A128VgCagTa11B.1.6340.003425
ORF1ab/nsp4128A128AgcAgcG11B.1.6370.000073
ORF1ab/nsp4128A128VgCagTa11B.1.80.001972
ORF1ab/nsp4128A128VgCagTa11B.1.930.000934
ORF1ab/nsp4128A128delGCA---11B.150.017544
ORF1ab/nsp4128A128VgCagTa11B.6.60.000889
ORF1ab/nsp4128A128FGCATTT11C.350.000774
ORF1ab/nsp4128A128delGCA---11P.10.000016
ORF1ab/nsp4128A128VgCagTa11P.1.100.000269
ORF1ab/nsp4128A128AgcAgcC11P.1.150.000232
ORF1ab/nsp4128A128TGcaAca11P.1.170.000162
ORF1ab/nsp4128A128AgcAgcG11P.1.170.000162
ORF1ab/nsp4128A128SGcATcT11P.1.170.000162
ORF1ab/nsp4128A128VgCagTa11P.1.70.000319
ORF1ab/nsp4128A128delGCA---11Q.10.000126
ORF1ab/nsp4128A128VgCagTa11Q.30.000145
ORF1ab/nsp4128A128VgCagTa11R.10.00009
ORF1ab/nsp4128A128VgCagTa11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.