CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 121 | F121F | F2884F | syn | ttC | ttT | 21231 | 21231 | 1 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121L | F2884L | nonsyn | Ttc | Ctc | 217 | 145 | 0.668203 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121L | F2884L | nonsyn | ttC | ttA | 217 | 66 | 0.304147 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121L | F2884L | nonsyn | ttC | ttG | 217 | 6 | 0.0276498 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121del | F2884del | del | TTC | --- | 97 | 97 | 1 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121I | F2884I | nonsyn | Ttc | Atc | 60 | 59 | 0.983333 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121I | F2884I | nonsyn | TtC | AtT | 60 | 1 | 0.0166667 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121S | F2884S | nonsyn | tTc | tCc | 17 | 17 | 1 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121V | F2884V | nonsyn | Ttc | Gtc | 11 | 9 | 0.818182 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121V | F2884V | nonsyn | TtC | GtG | 11 | 1 | 0.0909091 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121V | F2884V | nonsyn | TtC | GtT | 11 | 1 | 0.0909091 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121del1 | F2884del1 | del | ttC | tt- | 7 | 6 | 0.857143 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121del1 | F2884del1 | del | TTc | -Ac | 7 | 1 | 0.142857 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121C | F2884C | nonsyn | tTc | tGc | 6 | 6 | 1 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121M | F2884M | nonsyn | TtC | AtG | 1 | 1 | 1 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121del2 | F2884del2 | del | tTC | t-- | 1 | 1 | 1 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121G | F2884G | nonsyn | TTc | GGc | 1 | 1 | 1 | 8915-8917 |
ORF1ab/nsp4 | 121 | F121D | F2884D | nonsyn | TTc | GAc | 1 | 1 | 1 | 8915-8917 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 21231 | 21231 | All | 0.004061 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 8159 | 8159 | B.1.1.214 | 0.452473 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1808 | 1808 | B.1.1 | 0.032799 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1786 | 1786 | B.1.1.7 | 0.001599 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1736 | 1736 | AY.4 | 0.002702 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1212 | 1212 | AY.25 | 0.00729 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1207 | 1207 | AY.44 | 0.007347 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 350 | 350 | B.1.1.351 | 0.977654 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 334 | 334 | B.1.617.2 | 0.001258 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 245 | 245 | B.1 | 0.002244 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 242 | 242 | B.1.2 | 0.002131 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 227 | 227 | B.1.1.46 | 0.991266 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 224 | 224 | B.1.1.354 | 0.982456 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 145 | 217 | All | 0.000028 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 66 | 217 | All | 0.000013 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttG | 6 | 217 | All | 0.000001 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 208 | 208 | B.1.560 | 0.962963 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 144 | 144 | B.1.1.526 | 0.510638 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 142 | 142 | AY.103 | 0.000882 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 129 | 129 | B.1.375 | 0.105738 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 128 | 128 | AY.43 | 0.000567 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 121 | 121 | B.1.429 | 0.002847 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 108 | 108 | P.1.14 | 0.005163 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 97 | 97 | All | 0.000019 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 94 | 94 | AD.2 | 0.020582 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 93 | 93 | B.1.177 | 0.001225 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 93 | 93 | B.1.177.8 | 0.069977 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 90 | 90 | P.1 | 0.001418 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 81 | 81 | AY.47 | 0.00252 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 79 | 79 | AY.113 | 0.011249 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 75 | 75 | AY.7.1 | 0.008453 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 73 | 73 | AY.3 | 0.000726 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 68 | 68 | B.1.234 | 0.008972 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 67 | 67 | AY.119 | 0.002366 |
ORF1ab/nsp4 | 121 | F121I | Ttc | Atc | 59 | 60 | All | 0.000011 |
ORF1ab/nsp4 | 121 | F121I | TtC | AtT | 1 | 60 | All | 0 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 55 | 55 | AY.100 | 0.00253 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 54 | 54 | B.1.265 | 0.068615 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 30 | 53 | AY.103 | 0.000186 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 23 | 53 | AY.103 | 0.000143 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 47 | 47 | B.1.1.353 | 0.979167 |
ORF1ab/nsp4 | 121 | F121I | Ttc | Atc | 46 | 46 | AY.103 | 0.000286 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 45 | 45 | B.1.596 | 0.003921 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 43 | 43 | B.1.1.7 | 0.000038 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 43 | 43 | D.2 | 0.003227 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 41 | 41 | AY.4.2 | 0.000889 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 41 | 41 | B | 0.00524 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 41 | 41 | B.1.1.201 | 1 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 41 | 41 | B.1.427 | 0.00207 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 39 | 39 | AK.1 | 0.493671 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 38 | 38 | AY.39 | 0.000939 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 38 | 38 | B.1.36 | 0.005544 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 33 | 37 | B.1.1.7 | 0.00003 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 4 | 37 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 36 | 36 | AY.36 | 0.005336 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 32 | 32 | B.1.239 | 0.039072 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 31 | 32 | B.1.617.2 | 0.000117 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 1 | 32 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 31 | 31 | AY.26 | 0.000878 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 29 | 29 | AY.29 | 0.000457 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 28 | 28 | AU.2 | 0.067797 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 28 | 28 | AY.65 | 0.014925 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 27 | 27 | AY.20 | 0.001049 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 27 | 27 | B.1.389 | 0.027054 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 27 | 27 | B.40 | 0.009836 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 26 | 26 | B.1.526 | 0.000611 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 25 | 25 | B.1.110.3 | 0.01796 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 25 | 25 | B.1.177.21 | 0.001912 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 24 | 24 | B.1.619 | 0.020906 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 23 | 23 | AY.75 | 0.001289 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 23 | 23 | B.1.351 | 0.000684 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 22 | 22 | AY.46.4 | 0.003619 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 21 | 21 | B.1.243 | 0.001461 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 20 | 20 | AY.12 | 0.006321 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 20 | 20 | AY.5 | 0.000413 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 19 | 19 | AY.118 | 0.00119 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 19 | 19 | B.1.1.189 | 0.028744 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 18 | 18 | AY.102 | 0.000477 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 18 | 18 | B.1.1.519 | 0.000715 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 17 | 17 | All | 0.000003 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 15 | 15 | AY.120 | 0.000558 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 13 | 15 | AY.44 | 0.000079 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 2 | 15 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 15 | 15 | AY.6 | 0.000617 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 15 | 15 | B.1.1.28 | 0.004669 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 15 | 15 | P.2 | 0.0028 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 14 | 14 | B.1.466.2 | 0.005477 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 13 | 13 | AY.116 | 0.003728 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 13 | 13 | AY.73 | 0.008649 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 13 | 13 | B.1.1.409 | 0.036827 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 12 | 12 | P.1.7 | 0.003831 |
ORF1ab/nsp4 | 121 | F121V | Ttc | Gtc | 9 | 11 | All | 0.000002 |
ORF1ab/nsp4 | 121 | F121V | TtC | GtG | 1 | 11 | All | 0 |
ORF1ab/nsp4 | 121 | F121V | TtC | GtT | 1 | 11 | All | 0 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 11 | 11 | AY.117 | 0.00093 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 11 | 11 | AZ.1 | 0.00954 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 11 | 11 | B.1.1.182 | 1 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 11 | 11 | B.1.177.57 | 0.003091 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 11 | 11 | B.1.400 | 0.004719 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 10 | 10 | AY.23 | 0.000697 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 10 | 10 | AY.9.2 | 0.000367 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 10 | 10 | B.1.1.63 | 0.003858 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 10 | 10 | B.1.160.16 | 0.009294 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 10 | 10 | B.1.595 | 0.00261 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 9 | 9 | B.1.240 | 0.00194 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 9 | 9 | B.1.258.17 | 0.000936 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 9 | 9 | C.36.1 | 0.037344 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 8 | 8 | AY.42 | 0.000322 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 8 | 8 | AY.98 | 0.000632 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 8 | 8 | B.1.1.17 | 0.133333 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 8 | 8 | B.1.1.348 | 0.006369 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 8 | 8 | B.1.623 | 0.004292 |
ORF1ab/nsp4 | 121 | F121del1 | ttC | tt- | 6 | 7 | All | 0.000001 |
ORF1ab/nsp4 | 121 | F121del1 | TTc | -Ac | 1 | 7 | All | 0 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 7 | 7 | AY.45 | 0.000852 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 7 | 7 | AY.70 | 0.00146 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 7 | 7 | B.1.1.216 | 0.006233 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 7 | 7 | B.1.1.294 | 0.008861 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 7 | 7 | B.1.22 | 0.009223 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 7 | 7 | B.1.221 | 0.000497 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 7 | 7 | Q.1 | 0.000884 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 7 | 7 | R.1 | 0.00063 |
ORF1ab/nsp4 | 121 | F121C | tTc | tGc | 6 | 6 | All | 0.000001 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 6 | 6 | AY.16.1 | 0.00282 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 6 | 6 | AY.88 | 0.005305 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 6 | 6 | B.1.438.1 | 0.000644 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 5 | 5 | AY.39 | 0.000124 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp4 | 121 | F121I | Ttc | Atc | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 5 | 5 | B.1.1.362 | 0.02809 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 5 | 5 | B.1.1.67 | 0.022831 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 5 | 5 | B.1.409 | 0.003906 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 5 | 5 | B.1.428.2 | 0.166667 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 5 | 5 | B.1.509 | 0.004329 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 5 | 5 | B.1.587 | 0.009488 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | A | 0.001548 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | AY.4.5 | 0.00043 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | B.1.1.13 | 0.142857 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | B.1.1.253 | 0.010025 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | B.1.1.277 | 0.003035 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | B.1.1.464 | 0.005891 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | B.1.177.81 | 0.000757 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | B.1.525 | 0.000453 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | B.1.595.4 | 0.029197 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp4 | 121 | F121V | Ttc | Gtc | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 121 | F121V | TtC | GtT | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 121 | F121V | TtC | GtG | 1 | 3 | 0.055556 | |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 2 | 3 | AY.23 | 0.000139 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 1 | 3 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | AY.82 | 0.004071 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | AY.87 | 0.002498 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | AY.90 | 0.002053 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.1.305 | 0.011583 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.1.356 | 0.025641 |
ORF1ab/nsp4 | 121 | F121del1 | ttC | tt- | 2 | 3 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 121 | F121del1 | TTc | -Ac | 1 | 3 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.160.30 | 0.008929 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.351.3 | 0.002629 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | C.30 | 0.005181 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp4 | 121 | F121I | TtC | AtT | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 121 | F121I | Ttc | Atc | 1 | 2 | 0.055556 | |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 2 | 2 | AY.17 | 0.016393 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 121 | F121V | Ttc | Gtc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttG | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttG | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 1 | 2 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 121 | F121C | tTc | tGc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 121 | F121del1 | ttC | tt- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | AY.46.1 | 0.002053 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp4 | 121 | F121C | tTc | tGc | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.137 | 0.025 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.203 | 0.033898 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.237 | 0.010811 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.254 | 0.022472 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.286 | 0.005797 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.291 | 0.001485 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.327 | 0.2 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.402 | 0.022222 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.419 | 0.014815 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.45 | 0.028169 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.452 | 0.222222 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 121 | F121V | Ttc | Gtc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 121 | F121I | Ttc | Atc | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.1.83 | 0.00542 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.111 | 0.00235 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.177.82 | 0.000955 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.210 | 0.004264 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | C.10 | 0.5 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 121 | F121I | Ttc | Atc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | P.1.10 | 0.000539 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | P.1.16 | 0.000748 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp4 | 121 | F121M | TtC | AtG | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 121 | F121L | ttC | ttG | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | A.6 | 0.005128 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp4 | 121 | F121M | TtC | AtG | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 121 | F121del2 | tTC | t-- | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 121 | F121D | TTc | GAc | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 121 | F121G | TTc | GGc | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp4 | 121 | F121V | Ttc | Gtc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 121 | F121G | TTc | GGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp4 | 121 | F121V | Ttc | Gtc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.21 | 0.001898 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp4 | 121 | F121V | Ttc | Gtc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 121 | F121del2 | tTC | t-- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp4 | 121 | F121I | Ttc | Atc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 121 | F121I | Ttc | Atc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.9.2.1 | 0.001976 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp4 | 121 | F121I | Ttc | Atc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 121 | F121C | tTc | tGc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp4 | 121 | F121V | Ttc | Gtc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 121 | F121C | tTc | tGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 121 | F121D | TTc | GAc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.12 | 0.007463 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp4 | 121 | F121L | Ttc | Ctc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.262 | 0.015152 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | B.1.1.350 | 0.04 |
ORF1ab/nsp4 | 121 | F121del1 | ttC | tt- | 1 | 1 | B.1.1.353 | 0.020833 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.371 | 0.010417 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.374 | 0.002375 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.376 | 0.005952 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.41 | 0.006329 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.425 | 0.045455 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.430 | 0.041667 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.515 | 0.02 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.56 | 0.017857 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.1.57 | 0.011494 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.160.15 | 0.00495 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp4 | 121 | F121del1 | ttC | tt- | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.258.22 | 0.002667 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.318 | 0.038462 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.381 | 0.007812 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.1.415 | 0.014286 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.415.1 | 0.007576 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.422 | 0.000812 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.527 | 0.003704 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.545 | 0.014493 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | C.2.1 | 0.006667 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | C.27 | 0.018519 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 121 | F121S | tTc | tCc | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp4 | 121 | F121del | TTC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | P.1.13 | 0.000898 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttA | 1 | 1 | P.7 | 0.004367 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | Q.7 | 0.001111 |
ORF1ab/nsp4 | 121 | F121L | ttC | ttG | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp4 | 121 | F121F | ttC | ttT | 1 | 1 | W.1 | 0.008696 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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