CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp4 | 101 | F101L | F2864L | nonsyn | Ttt | Ctt | 884 | 844 | 0.954751 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101L | F2864L | nonsyn | ttT | ttA | 884 | 29 | 0.0328054 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101L | F2864L | nonsyn | ttT | ttG | 884 | 10 | 0.0113122 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101L | F2864L | nonsyn | TtT | CtG | 884 | 1 | 0.00113122 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101F | F2864F | syn | ttT | ttC | 171 | 171 | 1 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101del | F2864del | del | TTT | --- | 125 | 125 | 1 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101S | F2864S | nonsyn | tTt | tCt | 48 | 47 | 0.979167 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101S | F2864S | nonsyn | tTT | tCA | 48 | 1 | 0.0208333 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101Y | F2864Y | nonsyn | tTt | tAt | 24 | 24 | 1 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101I | F2864I | nonsyn | Ttt | Att | 22 | 22 | 1 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101C | F2864C | nonsyn | tTt | tGt | 22 | 22 | 1 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101V | F2864V | nonsyn | Ttt | Gtt | 13 | 13 | 1 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101del1 | F2864del1 | del | Ttt | -tt | 2 | 1 | 0.5 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101del1 | F2864del1 | del | ttT | tt- | 2 | 1 | 0.5 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101N | F2864N | nonsyn | TTt | AAt | 1 | 1 | 1 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101del2 | F2864del2 | del | TTt | --t | 1 | 1 | 1 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101G | F2864G | nonsyn | TTT | GGG | 1 | 1 | 1 | 8855-8857 |
ORF1ab/nsp4 | 101 | F101P | F2864P | nonsyn | TTT | CCG | 1 | 1 | 1 | 8855-8857 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 844 | 884 | All | 0.000161 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 29 | 884 | All | 0.000006 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttG | 10 | 884 | All | 0.000002 |
ORF1ab/nsp4 | 101 | F101L | TtT | CtG | 1 | 884 | All | 0 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 535 | 540 | B.1.1.7 | 0.000479 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 5 | 540 | B.1.1.7 | 0.000004 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 171 | 171 | All | 0.000033 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 168 | 168 | B.1.1.204 | 0.510638 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 125 | 125 | All | 0.000024 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 65 | 65 | AY.46 | 0.006765 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 47 | 48 | All | 0.000009 |
ORF1ab/nsp4 | 101 | F101S | tTT | tCA | 1 | 48 | All | 0 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 44 | 44 | B.1.1.7 | 0.000039 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 35 | 36 | B.1.617.2 | 0.000132 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 1 | 36 | B.1.617.2 | 0.000004 |
ORF1ab/nsp4 | 101 | F101Y | tTt | tAt | 24 | 24 | All | 0.000005 |
ORF1ab/nsp4 | 101 | F101C | tTt | tGt | 22 | 22 | All | 0.000004 |
ORF1ab/nsp4 | 101 | F101I | Ttt | Att | 22 | 22 | All | 0.000004 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 21 | 21 | B.1.526 | 0.000494 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 20 | 20 | AY.4 | 0.000031 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 10 | 18 | AY.4 | 0.000016 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 8 | 18 | AY.4 | 0.000012 |
ORF1ab/nsp4 | 101 | F101Y | tTt | tAt | 17 | 17 | B.1.1.7 | 0.000015 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 15 | 15 | B.1.160 | 0.000468 |
ORF1ab/nsp4 | 101 | F101C | tTt | tGt | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 13 | 13 | All | 0.000002 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 12 | 12 | AY.44 | 0.000073 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 9 | 12 | B.1.2 | 0.000079 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 2 | 12 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttG | 1 | 12 | B.1.2 | 0.000009 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 12 | 12 | B.1.221 | 0.000852 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 10 | 10 | AY.4 | 0.000016 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 7 | 7 | AY.106 | 0.002344 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp4 | 101 | F101I | Ttt | Att | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp4 | 101 | F101I | Ttt | Att | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 4 | 6 | P.1 | 0.000063 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttG | 1 | 6 | P.1 | 0.000016 |
ORF1ab/nsp4 | 101 | F101L | TtT | CtG | 1 | 6 | P.1 | 0.000016 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 5 | 5 | AY.4.5 | 0.000537 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 2 | 5 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 2 | 5 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttG | 1 | 5 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 5 | 5 | B.1.36.8 | 0.005 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 5 | 5 | P.1 | 0.000079 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttG | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 3 | 3 | AU.2 | 0.007264 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp4 | 101 | F101I | Ttt | Att | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 3 | 3 | P.3 | 0.004785 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttG | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 2 | 2 | 0.111111 | |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 2 | 2 | A.2 | 0.001324 |
ORF1ab/nsp4 | 101 | F101del1 | Ttt | -tt | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 101 | F101del1 | ttT | tt- | 1 | 2 | All | 0 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 2 | AY.54 | 0.000095 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 1 | 2 | AY.54 | 0.000095 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp4 | 101 | F101C | tTt | tGt | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp4 | 101 | F101S | tTT | tCA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 2 | 2 | B.1.177.10 | 0.001756 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp4 | 101 | F101I | Ttt | Att | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp4 | 101 | F101I | Ttt | Att | 1 | 1 | 0.055556 | |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp4 | 101 | F101del2 | TTt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 101 | F101P | TTT | CCG | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 101 | F101N | TTt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 101 | F101G | TTT | GGG | 1 | 1 | All | 0 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp4 | 101 | F101C | tTt | tGt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp4 | 101 | F101Y | tTt | tAt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 101 | F101C | tTt | tGt | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp4 | 101 | F101I | Ttt | Att | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp4 | 101 | F101Y | tTt | tAt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 101 | F101C | tTt | tGt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 101 | F101Y | tTt | tAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 101 | F101del2 | TTt | --t | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 101 | F101Y | tTt | tAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp4 | 101 | F101C | tTt | tGt | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp4 | 101 | F101del1 | ttT | tt- | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp4 | 101 | F101Y | tTt | tAt | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 101 | F101I | Ttt | Att | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 101 | F101C | tTt | tGt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttG | 1 | 1 | B.1.1.121 | 0.002427 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | B.1.1.133 | 0.008475 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 101 | F101P | TTT | CCG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp4 | 101 | F101C | tTt | tGt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.140 | 0.018868 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | B.1.160.22 | 0.006757 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.177.55 | 0.002331 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.177.69 | 0.001484 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp4 | 101 | F101N | TTt | AAt | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp4 | 101 | F101L | ttT | ttA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 1 | 1 | B.1.382 | 0.008929 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | B.1.383 | 0.009009 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp4 | 101 | F101Y | tTt | tAt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 101 | F101del1 | Ttt | -tt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp4 | 101 | F101Y | tTt | tAt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 101 | F101G | TTT | GGG | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 101 | F101I | Ttt | Att | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp4 | 101 | F101S | tTt | tCt | 1 | 1 | B.1.563 | 0.016949 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | B.15 | 0.017544 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp4 | 101 | F101V | Ttt | Gtt | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp4 | 101 | F101L | Ttt | Ctt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp4 | 101 | F101F | ttT | ttC | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp4 | 101 | F101I | Ttt | Att | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp4 | 101 | F101del | TTT | --- | 1 | 1 | U.3 | 0.003861 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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