CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp4 : CodonNum = 101

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp4101F101LF2864LnonsynTttCtt8848440.9547518855-8857
ORF1ab/nsp4101F101LF2864LnonsynttTttA884290.03280548855-8857
ORF1ab/nsp4101F101LF2864LnonsynttTttG884100.01131228855-8857
ORF1ab/nsp4101F101LF2864LnonsynTtTCtG88410.001131228855-8857
ORF1ab/nsp4101F101FF2864FsynttTttC17117118855-8857
ORF1ab/nsp4101F101delF2864deldelTTT---12512518855-8857
ORF1ab/nsp4101F101SF2864SnonsyntTttCt48470.9791678855-8857
ORF1ab/nsp4101F101SF2864SnonsyntTTtCA4810.02083338855-8857
ORF1ab/nsp4101F101YF2864YnonsyntTttAt242418855-8857
ORF1ab/nsp4101F101IF2864InonsynTttAtt222218855-8857
ORF1ab/nsp4101F101CF2864CnonsyntTttGt222218855-8857
ORF1ab/nsp4101F101VF2864VnonsynTttGtt131318855-8857
ORF1ab/nsp4101F101del1F2864del1delTtt-tt210.58855-8857
ORF1ab/nsp4101F101del1F2864del1delttTtt-210.58855-8857
ORF1ab/nsp4101F101NF2864NnonsynTTtAAt1118855-8857
ORF1ab/nsp4101F101del2F2864del2delTTt--t1118855-8857
ORF1ab/nsp4101F101GF2864GnonsynTTTGGG1118855-8857
ORF1ab/nsp4101F101PF2864PnonsynTTTCCG1118855-8857

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp4101F101LTttCtt844884All0.000161
ORF1ab/nsp4101F101LttTttA29884All0.000006
ORF1ab/nsp4101F101LttTttG10884All0.000002
ORF1ab/nsp4101F101LTtTCtG1884All0
ORF1ab/nsp4101F101LTttCtt535540B.1.1.70.000479
ORF1ab/nsp4101F101LttTttA5540B.1.1.70.000004
ORF1ab/nsp4101F101FttTttC171171All0.000033
ORF1ab/nsp4101F101LTttCtt168168B.1.1.2040.510638
ORF1ab/nsp4101F101delTTT---125125All0.000024
ORF1ab/nsp4101F101FttTttC6565AY.460.006765
ORF1ab/nsp4101F101StTttCt4748All0.000009
ORF1ab/nsp4101F101StTTtCA148All0
ORF1ab/nsp4101F101delTTT---4444B.1.1.70.000039
ORF1ab/nsp4101F101LTttCtt3536B.1.617.20.000132
ORF1ab/nsp4101F101LttTttA136B.1.617.20.000004
ORF1ab/nsp4101F101YtTttAt2424All0.000005
ORF1ab/nsp4101F101CtTttGt2222All0.000004
ORF1ab/nsp4101F101ITttAtt2222All0.000004
ORF1ab/nsp4101F101LTttCtt2121B.1.5260.000494
ORF1ab/nsp4101F101FttTttC2020AY.40.000031
ORF1ab/nsp4101F101LttTttA1018AY.40.000016
ORF1ab/nsp4101F101LTttCtt818AY.40.000012
ORF1ab/nsp4101F101YtTttAt1717B.1.1.70.000015
ORF1ab/nsp4101F101StTttCt1616B.1.1.70.000014
ORF1ab/nsp4101F101StTttCt1515B.1.1600.000468
ORF1ab/nsp4101F101CtTttGt1414B.1.2580.000932
ORF1ab/nsp4101F101VTttGtt1313All0.000002
ORF1ab/nsp4101F101FttTttC1212AY.440.000073
ORF1ab/nsp4101F101LTttCtt912B.1.20.000079
ORF1ab/nsp4101F101LttTttA212B.1.20.000018
ORF1ab/nsp4101F101LttTttG112B.1.20.000009
ORF1ab/nsp4101F101FttTttC1212B.1.2210.000852
ORF1ab/nsp4101F101delTTT---1111AY.430.000049
ORF1ab/nsp4101F101delTTT---1010AY.40.000016
ORF1ab/nsp4101F101FttTttC99AY.1030.000056
ORF1ab/nsp4101F101FttTttC99B.1.1.70.000008
ORF1ab/nsp4101F101FttTttC99B.1.617.20.000034
ORF1ab/nsp4101F101delTTT---88B.1.1770.000105
ORF1ab/nsp4101F101LTttCtt77AY.1060.002344
ORF1ab/nsp4101F101LTttCtt66AY.3.10.000512
ORF1ab/nsp4101F101ITttAtt66AY.430.000027
ORF1ab/nsp4101F101LTttCtt66B.1.5960.000523
ORF1ab/nsp4101F101ITttAtt66B.1.617.20.000023
ORF1ab/nsp4101F101LTttCtt46P.10.000063
ORF1ab/nsp4101F101LttTttG16P.10.000016
ORF1ab/nsp4101F101LTtTCtG16P.10.000016
ORF1ab/nsp4101F101LTttCtt55AY.230.000349
ORF1ab/nsp4101F101delTTT---55AY.4.50.000537
ORF1ab/nsp4101F101LttTttA25AY.430.000009
ORF1ab/nsp4101F101LTttCtt25AY.430.000009
ORF1ab/nsp4101F101LttTttG15AY.430.000004
ORF1ab/nsp4101F101LTttCtt55B.1.36.80.005
ORF1ab/nsp4101F101FttTttC55P.10.000079
ORF1ab/nsp4101F101delTTT---44B.10.000037
ORF1ab/nsp4101F101LttTttG44B.1.10.000073
ORF1ab/nsp4101F101LTttCtt33AU.20.007264
ORF1ab/nsp4101F101LTttCtt33AY.390.000074
ORF1ab/nsp4101F101ITttAtt33AY.40.000005
ORF1ab/nsp4101F101FttTttC33B.10.000027
ORF1ab/nsp4101F101FttTttC33B.1.1600.000094
ORF1ab/nsp4101F101VTttGtt33B.1.1770.00004
ORF1ab/nsp4101F101LTttCtt33P.30.004785
ORF1ab/nsp4101F101LttTttG220.111111
ORF1ab/nsp4101F101delTTT---220.111111
ORF1ab/nsp4101F101delTTT---22A.20.001324
ORF1ab/nsp4101F101del1Ttt-tt12All0
ORF1ab/nsp4101F101del1ttTtt-12All0
ORF1ab/nsp4101F101FttTttC22AY.1020.000053
ORF1ab/nsp4101F101LTttCtt22AY.1030.000012
ORF1ab/nsp4101F101LttTttA22AY.130.000322
ORF1ab/nsp4101F101StTttCt22AY.250.000012
ORF1ab/nsp4101F101delTTT---22AY.250.000012
ORF1ab/nsp4101F101LTttCtt22AY.30.00002
ORF1ab/nsp4101F101StTttCt22AY.40.000003
ORF1ab/nsp4101F101LTttCtt22AY.4.20.000043
ORF1ab/nsp4101F101StTttCt22AY.430.000009
ORF1ab/nsp4101F101StTttCt22AY.470.000062
ORF1ab/nsp4101F101LTttCtt12AY.540.000095
ORF1ab/nsp4101F101LttTttA12AY.540.000095
ORF1ab/nsp4101F101FttTttC22AY.570.001312
ORF1ab/nsp4101F101CtTttGt22AY.9.20.000073
ORF1ab/nsp4101F101LTttCtt22B0.000256
ORF1ab/nsp4101F101StTttCt12B.10.000009
ORF1ab/nsp4101F101StTTtCA12B.10.000009
ORF1ab/nsp4101F101FttTttC22B.1.1.5190.000079
ORF1ab/nsp4101F101FttTttC22B.1.1770.000026
ORF1ab/nsp4101F101LttTttA22B.1.177.100.001756
ORF1ab/nsp4101F101delTTT---22B.1.20.000018
ORF1ab/nsp4101F101delTTT---22B.1.36.170.000988
ORF1ab/nsp4101F101LTttCtt22B.1.466.20.000782
ORF1ab/nsp4101F101VTttGtt22B.1.617.20.000008
ORF1ab/nsp4101F101ITttAtt22B.1.6210.000177
ORF1ab/nsp4101F101ITttAtt110.055556
ORF1ab/nsp4101F101delTTT---11AH.30.003802
ORF1ab/nsp4101F101del2TTt--t11All0
ORF1ab/nsp4101F101PTTTCCG11All0
ORF1ab/nsp4101F101NTTtAAt11All0
ORF1ab/nsp4101F101GTTTGGG11All0
ORF1ab/nsp4101F101FttTttC11AY.1000.000046
ORF1ab/nsp4101F101CtTttGt11AY.1030.000006
ORF1ab/nsp4101F101delTTT---11AY.1110.000183
ORF1ab/nsp4101F101FttTttC11AY.1130.000142
ORF1ab/nsp4101F101YtTttAt11AY.1170.000085
ORF1ab/nsp4101F101delTTT---11AY.1200.000037
ORF1ab/nsp4101F101delTTT---11AY.190.00114
ORF1ab/nsp4101F101CtTttGt11AY.190.00114
ORF1ab/nsp4101F101VTttGtt11AY.230.00007
ORF1ab/nsp4101F101FttTttC11AY.230.00007
ORF1ab/nsp4101F101LTttCtt11AY.240.000431
ORF1ab/nsp4101F101FttTttC11AY.240.000431
ORF1ab/nsp4101F101ITttAtt11AY.250.000006
ORF1ab/nsp4101F101FttTttC11AY.250.000006
ORF1ab/nsp4101F101YtTttAt11AY.260.000028
ORF1ab/nsp4101F101FttTttC11AY.260.000028
ORF1ab/nsp4101F101StTttCt11AY.290.000016
ORF1ab/nsp4101F101FttTttC11AY.30.00001
ORF1ab/nsp4101F101delTTT---11AY.330.000067
ORF1ab/nsp4101F101VTttGtt11AY.40.000002
ORF1ab/nsp4101F101CtTttGt11AY.40.000002
ORF1ab/nsp4101F101YtTttAt11AY.40.000002
ORF1ab/nsp4101F101del2TTt--t11AY.40.000002
ORF1ab/nsp4101F101StTttCt11AY.4.2.10.000149
ORF1ab/nsp4101F101VTttGtt11AY.420.00004
ORF1ab/nsp4101F101FttTttC11AY.430.000004
ORF1ab/nsp4101F101LttTttA11AY.440.000006
ORF1ab/nsp4101F101YtTttAt11AY.440.000006
ORF1ab/nsp4101F101delTTT---11AY.450.000122
ORF1ab/nsp4101F101FttTttC11AY.46.60.000072
ORF1ab/nsp4101F101FttTttC11AY.50.000021
ORF1ab/nsp4101F101delTTT---11AY.50.000021
ORF1ab/nsp4101F101CtTttGt11AY.60.000041
ORF1ab/nsp4101F101del1ttTtt-11AY.600.000938
ORF1ab/nsp4101F101FttTttC11AY.610.000105
ORF1ab/nsp4101F101LttTttA11AY.690.000187
ORF1ab/nsp4101F101VTttGtt11AY.690.000187
ORF1ab/nsp4101F101delTTT---11AY.720.001361
ORF1ab/nsp4101F101LTttCtt11AY.740.000116
ORF1ab/nsp4101F101LTttCtt11AY.750.000056
ORF1ab/nsp4101F101delTTT---11AY.90.000068
ORF1ab/nsp4101F101delTTT---11AY.9.20.000037
ORF1ab/nsp4101F101VTttGtt11AY.9.20.000037
ORF1ab/nsp4101F101YtTttAt11AY.990.001049
ORF1ab/nsp4101F101delTTT---11AY.99.10.001553
ORF1ab/nsp4101F101LttTttA11B.10.000009
ORF1ab/nsp4101F101ITttAtt11B.10.000009
ORF1ab/nsp4101F101delTTT---11B.1.10.000018
ORF1ab/nsp4101F101CtTttGt11B.1.10.000018
ORF1ab/nsp4101F101LttTttG11B.1.1.1210.002427
ORF1ab/nsp4101F101LTttCtt11B.1.1.1330.008475
ORF1ab/nsp4101F101delTTT---11B.1.1.3060.000438
ORF1ab/nsp4101F101PTTTCCG11B.1.1.3060.000438
ORF1ab/nsp4101F101delTTT---11B.1.1.3110.000358
ORF1ab/nsp4101F101delTTT---11B.1.1.3150.008475
ORF1ab/nsp4101F101delTTT---11B.1.1.4090.002833
ORF1ab/nsp4101F101FttTttC11B.1.1.4320.001266
ORF1ab/nsp4101F101FttTttC11B.1.1.5230.001563
ORF1ab/nsp4101F101CtTttGt11B.1.1.70.000001
ORF1ab/nsp4101F101delTTT---11B.1.1.700.000341
ORF1ab/nsp4101F101LTttCtt11B.1.1040.00369
ORF1ab/nsp4101F101delTTT---11B.1.1400.018868
ORF1ab/nsp4101F101LTttCtt11B.1.160.220.006757
ORF1ab/nsp4101F101delTTT---11B.1.160.230.004831
ORF1ab/nsp4101F101StTttCt11B.1.1770.000013
ORF1ab/nsp4101F101delTTT---11B.1.177.160.000664
ORF1ab/nsp4101F101delTTT---11B.1.177.190.001431
ORF1ab/nsp4101F101delTTT---11B.1.177.550.002331
ORF1ab/nsp4101F101delTTT---11B.1.177.570.000281
ORF1ab/nsp4101F101delTTT---11B.1.177.620.001192
ORF1ab/nsp4101F101delTTT---11B.1.177.630.002703
ORF1ab/nsp4101F101delTTT---11B.1.177.690.001484
ORF1ab/nsp4101F101VTttGtt11B.1.2100.002132
ORF1ab/nsp4101F101delTTT---11B.1.221.10.002907
ORF1ab/nsp4101F101NTTtAAt11B.1.221.40.004167
ORF1ab/nsp4101F101LttTttA11B.1.2430.00007
ORF1ab/nsp4101F101delTTT---11B.1.258.110.000396
ORF1ab/nsp4101F101VTttGtt11B.1.3510.00003
ORF1ab/nsp4101F101StTttCt11B.1.3820.008929
ORF1ab/nsp4101F101FttTttC11B.1.3830.009009
ORF1ab/nsp4101F101FttTttC11B.1.3910.001127
ORF1ab/nsp4101F101YtTttAt11B.1.3960.000706
ORF1ab/nsp4101F101StTttCt11B.1.4000.000429
ORF1ab/nsp4101F101LTttCtt11B.1.4290.000024
ORF1ab/nsp4101F101del1Ttt-tt11B.1.4290.000024
ORF1ab/nsp4101F101YtTttAt11B.1.466.20.000391
ORF1ab/nsp4101F101GTTTGGG11B.1.466.20.000391
ORF1ab/nsp4101F101StTttCt11B.1.5260.000024
ORF1ab/nsp4101F101ITttAtt11B.1.5260.000024
ORF1ab/nsp4101F101StTttCt11B.1.5630.016949
ORF1ab/nsp4101F101delTTT---11B.1.5960.000087
ORF1ab/nsp4101F101LTttCtt11B.1.5990.00365
ORF1ab/nsp4101F101LTttCtt11B.1.617.10.000129
ORF1ab/nsp4101F101delTTT---11B.1.617.10.000129
ORF1ab/nsp4101F101LTttCtt11B.1.6210.000089
ORF1ab/nsp4101F101delTTT---11B.150.017544
ORF1ab/nsp4101F101LTttCtt11B.60.00091
ORF1ab/nsp4101F101VTttGtt11C.350.000774
ORF1ab/nsp4101F101LTttCtt11C.370.000116
ORF1ab/nsp4101F101LTttCtt11D.20.000075
ORF1ab/nsp4101F101delTTT---11P.10.000016
ORF1ab/nsp4101F101FttTttC11P.1.140.000048
ORF1ab/nsp4101F101ITttAtt11Q.10.000126
ORF1ab/nsp4101F101delTTT---11U.30.003861