CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 817 | Y817Y | Y1635Y | syn | taC | taT | 10384 | 10384 | 1 | 5168-5170 |
Details of the mutation Y817Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 10384 | 10384 | All | 0.001986 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 6636 | 6636 | B.1.177 | 0.08738 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1515 | 1515 | B.1.177.15 | 0.955836 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 410 | 410 | B.1.1.7 | 0.000367 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 164 | 164 | B.1.177.14 | 1 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 135 | 135 | AA.1 | 0.978261 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 129 | 129 | AA.2 | 0.992308 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 110 | 110 | AA.4 | 1 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 99 | 99 | B.1.177.78 | 0.961165 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 81 | 81 | B.1.596 | 0.007058 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 72 | 72 | AA.7 | 0.66055 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 71 | 71 | AY.46.6 | 0.005127 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 62 | 62 | AA.5 | 1 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 62 | 62 | AA.6 | 1 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 54 | 54 | AY.4 | 0.000084 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 50 | 50 | B.1 | 0.000458 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 50 | 50 | B.1.617.2 | 0.000188 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 45 | 45 | AA.8 | 1 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 42 | 42 | B.1.429 | 0.000988 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 37 | 37 | AA.3 | 1 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 36 | 36 | B.1.160.30 | 0.107143 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 30 | 30 | AY.33 | 0.002003 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 25 | 25 | AY.3 | 0.000249 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 24 | 24 | AY.25 | 0.000144 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 21 | 21 | AY.43 | 0.000093 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 20 | 20 | AY.4.2.1 | 0.00298 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 17 | 17 | B.1.177.82 | 0.008115 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 16 | 16 | A.1 | 0.00451 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 15 | 15 | B.1.2 | 0.000132 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 15 | 15 | B.1.311 | 0.004119 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 13 | 13 | AY.120 | 0.000483 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 11 | 11 | B.1.258 | 0.000732 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 11 | 11 | P.1 | 0.000173 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 10 | 10 | B.1.36.29 | 0.005173 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 9 | 9 | AY.119 | 0.000318 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 9 | 9 | B.1.221 | 0.000639 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 9 | 9 | B.1.438.1 | 0.000965 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 7 | 7 | AY.118 | 0.000439 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 7 | 7 | B.1.177.69 | 0.010386 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 7 | 7 | B.1.617.1 | 0.000903 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 7 | 7 | B.39 | 0.016317 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 7 | 7 | D.2 | 0.000525 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 6 | 6 | B | 0.000767 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 6 | 6 | B.1.177.62 | 0.007151 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 5 | 5 | AY.68 | 0.001369 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 5 | 5 | B.1.177.44 | 0.002595 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 4 | 4 | C.37 | 0.000464 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 3 | 3 | AY.46 | 0.000312 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 3 | 3 | B.1.1.153 | 0.003286 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 3 | 3 | B.1.177.31 | 0.034483 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 3 | 3 | B.1.201 | 0.017045 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 3 | 3 | B.1.258.17 | 0.000312 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 3 | 3 | B.1.609 | 0.001438 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | B.1.177.40 | 0.010309 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | B.1.236 | 0.004107 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | B.1.493 | 0.051282 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.177.35 | 0.000691 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.420 | 0.010417 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.35 | 0.007812 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp3 | 817 | Y817Y | taC | taT | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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