CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1776 | Y1776Y | Y2594Y | syn | taC | taT | 33470 | 33470 | 1 | 8045-8047 |
Details of the mutation Y1776Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 33470 | 33470 | All | 0.006402 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 14728 | 14728 | B.1.258 | 0.980102 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 9577 | 9577 | B.1.258.17 | 0.995737 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2516 | 2516 | B.1.258.11 | 0.997226 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1020 | 1020 | B.1.258.14 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 611 | 611 | B.1.258.16 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 597 | 597 | B.1.258.3 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 523 | 523 | B.1.258.7 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 482 | 482 | B.1.1.7 | 0.000431 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 375 | 375 | B.1.258.22 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 290 | 290 | B.1.258.4 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 258 | 258 | B.1 | 0.002363 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 243 | 243 | B.1.427 | 0.012271 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 222 | 222 | B.1.258.2 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 200 | 200 | B.1.258.9 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 141 | 141 | B.1.258.19 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 127 | 127 | B.1.258.12 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 127 | 127 | B.1.258.21 | 0.984496 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 114 | 114 | B.1.258.5 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 96 | 96 | B.1.617.2 | 0.000361 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 93 | 93 | B.1.258.24 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 88 | 88 | B.1.258.10 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 67 | 67 | B.1.1 | 0.001215 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 63 | 63 | B.1.258.20 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 53 | 53 | B.1.258.15 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 52 | 52 | P.1 | 0.000819 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 51 | 51 | B.1.258.6 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 50 | 50 | B.1.177 | 0.000658 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 42 | 42 | B.1.258.23 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 37 | 37 | AY.103 | 0.00023 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 36 | 36 | AY.4 | 0.000056 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 32 | 32 | AY.20 | 0.001244 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 31 | 31 | AY.25 | 0.000186 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 30 | 30 | R.1 | 0.0027 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 28 | 28 | B.1.160 | 0.000873 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 27 | 27 | B.1.609 | 0.012943 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 24 | 24 | AY.44 | 0.000146 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 23 | 23 | G.1 | 0.958333 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 22 | 22 | AY.26 | 0.000623 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 19 | 19 | AY.100 | 0.000874 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 19 | 19 | B.1.221 | 0.00135 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 16 | 16 | AY.39.1 | 0.000634 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 15 | 15 | AY.106 | 0.005023 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 15 | 15 | B.1.367 | 0.011886 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 14 | 14 | B.1.575 | 0.004248 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 10 | 10 | B.1.258.18 | 1 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 10 | 10 | B.1.600 | 0.05848 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 9 | 9 | AY.2 | 0.003205 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 8 | 8 | A | 0.003096 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 7 | 7 | B.4.1 | 0.132075 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 7 | 7 | C.1 | 0.016746 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 5 | 5 | B.1.177.81 | 0.000947 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 5 | 5 | B.1.375 | 0.004098 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 5 | 5 | B.1.411 | 0.018519 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 5 | 5 | C.37 | 0.00058 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 4 | 4 | AY.46.2 | 0.002541 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 4 | 4 | C.36 | 0.003643 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | B.1.1.301 | 0.003538 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | B.1.177.6 | 0.00293 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | B.1.177.88 | 0.037037 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | B.1.222 | 0.005076 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.1.424 | 0.090909 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.177.4 | 0.000422 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.432 | 0.022472 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 2 | 2 | C.11 | 0.021277 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.123 | 0.017857 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.293 | 0.0125 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.406 | 0.006061 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | B.1.627 | 0.00202 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1776 | Y1776Y | taC | taT | 1 | 1 | Q.8 | 0.000165 |
![]() |
![]() |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|