CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1742 | Y1742Y | Y2560Y | syn | taC | taT | 10929 | 10929 | 1 | 7943-7945 |
Details of the mutation Y1742Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 10929 | 10929 | All | 0.00209 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2260 | 2260 | B.1.1.7 | 0.002023 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1601 | 1601 | B.1.177.21 | 0.122429 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 950 | 950 | AY.4 | 0.001479 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 821 | 821 | P.1 | 0.012934 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 462 | 462 | B.1.2 | 0.004068 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 371 | 371 | AY.5 | 0.007661 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 368 | 368 | B.1.551 | 0.474839 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 274 | 274 | B.1.617.2 | 0.001032 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 192 | 192 | AY.25 | 0.001155 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 185 | 185 | AY.103 | 0.001149 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 169 | 169 | AY.3 | 0.001681 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 144 | 144 | AY.43 | 0.000638 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 142 | 142 | B.1.160 | 0.004429 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 137 | 137 | B.1 | 0.001255 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 120 | 120 | B.1.243 | 0.00835 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 118 | 118 | AY.44 | 0.000718 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 118 | 118 | AY.75 | 0.006611 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 107 | 107 | AY.26 | 0.003029 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 106 | 106 | B.1.221 | 0.007529 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 98 | 98 | P.1.11 | 1 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 87 | 87 | AY.39 | 0.00215 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 82 | 82 | B.1.429 | 0.001929 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 81 | 81 | B.1.1 | 0.001469 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 76 | 76 | AY.119 | 0.002683 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 76 | 76 | AY.4.2 | 0.001648 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 71 | 71 | B.1.177 | 0.000935 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 65 | 65 | AY.121 | 0.008796 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 64 | 64 | B.1.427 | 0.003232 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 57 | 57 | Q.1 | 0.007201 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 55 | 55 | AY.42 | 0.002213 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 55 | 55 | B.1.1.334 | 0.901639 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 42 | 42 | AY.6 | 0.001727 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 39 | 39 | B.1.177.60 | 0.008519 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 39 | 39 | B.1.361 | 0.050258 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 39 | 39 | B.1.526 | 0.000917 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 33 | 33 | AY.47 | 0.001026 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 31 | 31 | AY.29 | 0.000489 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 29 | 29 | AY.59 | 0.01536 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 28 | 28 | P.1.14 | 0.001338 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 27 | 27 | B.1.36.8 | 0.027 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 25 | 25 | AY.102 | 0.000663 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 24 | 24 | AY.120 | 0.000892 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 24 | 24 | Q.8 | 0.003958 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 21 | 21 | AY.23 | 0.001465 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 20 | 20 | A.9 | 0.909091 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 20 | 20 | AY.20 | 0.000777 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 20 | 20 | AY.98 | 0.00158 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 19 | 19 | AY.33 | 0.001269 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 19 | 19 | AY.39.1 | 0.000753 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 18 | 18 | AY.100 | 0.000828 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 18 | 18 | B.1.1.519 | 0.000715 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 18 | 18 | B.1.517 | 0.007686 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 18 | 18 | B.1.596 | 0.001568 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 17 | 17 | AY.21 | 0.032258 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 17 | 17 | C.37 | 0.001973 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 15 | 15 | B.1.258 | 0.000998 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 14 | 14 | B.1.177.86 | 0.002568 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 12 | 12 | AY.118 | 0.000752 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 12 | 12 | AY.46.4 | 0.001974 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 12 | 12 | B.1.177.75 | 0.012487 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 12 | 12 | B.1.586 | 0.131868 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 11 | 11 | B.1.1.25 | 0.006254 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 11 | 11 | B.1.422 | 0.008936 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 10 | 10 | AY.54 | 0.000953 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 10 | 10 | B.1.1.115 | 0.089286 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 10 | 10 | B.1.1.214 | 0.000555 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 10 | 10 | B.1.1.28 | 0.003112 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 10 | 10 | B.1.1.294 | 0.012658 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 10 | 10 | B.1.621 | 0.000885 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 9 | 9 | AY.113 | 0.001282 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 9 | 9 | AY.114 | 0.00208 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 9 | 9 | AY.14 | 0.000792 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 9 | 9 | AY.3.1 | 0.000767 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 9 | 9 | AY.4.2.1 | 0.001341 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 9 | 9 | AY.46.6 | 0.00065 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 9 | 9 | AY.98.1 | 0.000436 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 9 | 9 | P.2 | 0.00168 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 8 | 8 | AY.39.2 | 0.012327 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 8 | 8 | AY.46 | 0.000833 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 8 | 8 | AY.75.1 | 0.001442 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 8 | 8 | AY.78 | 0.012327 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 8 | 8 | B.1.1.434 | 0.002788 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 8 | 8 | B.1.351.2 | 0.002421 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 8 | 8 | P.1.17 | 0.001294 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | B.1.1.268 | 0.104478 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | B.1.1.512 | 0.2 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | B.1.177.2 | 0.031818 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | B.1.36 | 0.001021 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | B.1.470 | 0.009831 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | B.1.497 | 0.002203 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | C.35 | 0.005418 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 7 | 7 | P.1.15 | 0.001626 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 6 | 6 | AY.106 | 0.002009 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 6 | 6 | AY.116 | 0.001721 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 6 | 6 | AY.117 | 0.000507 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 6 | 6 | AY.34 | 0.000582 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 6 | 6 | AY.7.2 | 0.003356 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 6 | 6 | B.1.1.153 | 0.006572 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 6 | 6 | B.1.575 | 0.00182 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 6 | 6 | P.1.12 | 0.002904 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 5 | 5 | AY.91 | 0.003652 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 5 | 5 | B.1.1.286 | 0.014493 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 5 | 5 | B.1.1.409 | 0.014164 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 5 | 5 | B.1.1.521 | 0.026738 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 5 | 5 | B.1.177.77 | 0.003631 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 5 | 5 | C.36 | 0.004554 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | B.1.1.265 | 0.012618 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | B.1.1.284 | 0.00043 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | B.1.177.4 | 0.000844 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | B.1.177.79 | 0.009368 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | B.1.582 | 0.001963 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | B.1.609 | 0.001918 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | B.1.618 | 0.016129 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 4 | 4 | P.1.16 | 0.001496 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | A.2 | 0.001985 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | A.28 | 0.007937 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | AY.16 | 0.001139 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | AY.2 | 0.001068 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | AY.37 | 0.000948 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | AY.38 | 0.001498 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.1.161 | 0.010601 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.1.170 | 0.003741 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.1.448 | 0.006098 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.1.70 | 0.001023 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.160.15 | 0.014851 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.177.17 | 0.002463 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.177.33 | 0.004934 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.349 | 0.002144 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.36.26 | 0.008571 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.375 | 0.002459 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.499 | 0.003151 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.509 | 0.002597 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.538 | 0.024194 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | B.45 | 0.011494 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | C.16 | 0.003181 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | P.1.1 | 0.000953 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | P.5 | 0.041096 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | A.5 | 0.003846 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AD.2 | 0.000438 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AY.104 | 0.003968 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AY.51 | 0.001818 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.1.186 | 0.006873 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.1.204 | 0.006079 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.1.269 | 0.002706 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.1.279 | 0.002242 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.1.336 | 0.033333 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.1.52 | 0.02439 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.177.5 | 0.002484 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.36.19 | 0.018519 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.459 | 0.008163 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.564 | 0.000852 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.620 | 0.001892 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.1.627 | 0.00404 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | B.31 | 0.007463 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | N.3 | 0.011628 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 2 | 2 | P.1.8 | 0.009569 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AW.1 | 0.003049 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.80 | 0.001129 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AY.97 | 0.001701 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.208 | 0.012195 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.228 | 0.003049 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.31 | 0.066667 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.333 | 0.001076 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.360 | 0.03125 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.391 | 0.008547 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.404 | 0.015873 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.413 | 0.006897 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.425 | 0.045455 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.431 | 0.016129 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.453 | 0.008475 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.124 | 0.007812 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.131 | 0.008772 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.160.30 | 0.002976 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.177.6 | 0.000977 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.214.1 | 0.02 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.401 | 0.008197 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.493 | 0.025641 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.507 | 0.011236 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.510 | 0.026316 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.567 | 0.003333 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | B.1.639 | 0.021739 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | C.31 | 0.017857 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | Q.2 | 0.000613 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | S.1 | 0.00495 |
ORF1ab/nsp3 | 1742 | Y1742Y | taC | taT | 1 | 1 | W.3 | 0.005263 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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