CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1595 | Y1595Y | Y2413Y | syn | taC | taT | 3707 | 3707 | 1 | 7502-7504 |
Details of the mutation Y1595Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 3707 | 3707 | All | 0.000709 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1306 | 1306 | B.1.36.27 | 0.996947 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 976 | 976 | B.1.1.7 | 0.000874 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 372 | 372 | B.1.160.14 | 0.788136 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 314 | 314 | B.1.36 | 0.045813 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 259 | 259 | B.1.1.519 | 0.010285 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 51 | 51 | AY.20 | 0.001982 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 38 | 38 | B.1.2 | 0.000335 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 29 | 29 | B.1.1.214 | 0.001608 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 28 | 28 | B.1.617.2 | 0.000105 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 26 | 26 | AY.4 | 0.00004 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 25 | 25 | AY.103 | 0.000155 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 22 | 22 | B.1 | 0.000202 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 21 | 21 | B.1.1.416 | 0.019005 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 16 | 16 | B.1.581 | 0.150943 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 13 | 13 | AY.4.2 | 0.000282 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 11 | 11 | B.1.177 | 0.000145 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 10 | 10 | AY.43 | 0.000044 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 10 | 10 | B.1.351.2 | 0.003026 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 8 | 8 | AY.3 | 0.00008 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 5 | 5 | AY.98.1 | 0.000242 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 4 | 4 | AY.120 | 0.000149 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 4 | 4 | AY.29.1 | 0.000882 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 4 | 4 | B.1.406 | 0.024242 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 4 | 4 | B.1.468 | 0.022857 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 3 | 3 | B.1.1.318 | 0.000905 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 3 | 3 | B.1.221 | 0.000213 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 3 | 3 | B.1.260 | 0.010033 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 3 | 3 | B.1.319 | 0.009146 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 3 | 3 | B.1.36.17 | 0.001482 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 2 | 2 | B.1.177.31 | 0.022989 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 2 | 2 | B.31 | 0.007463 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.1.196 | 0.005714 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.1.201 | 0.02439 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.1.45 | 0.014085 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.160.29 | 0.004219 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.36.28 | 0.005747 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.36.34 | 0.021277 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | G.1 | 0.041667 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp3 | 1595 | Y1595Y | taC | taT | 1 | 1 | Q.7 | 0.001111 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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