CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = Y1595Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31595Y1595YY2413YsyntaCtaT3707370717502-7504

Details of the mutation Y1595Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31595Y1595YtaCtaT37073707All0.000709
ORF1ab/nsp31595Y1595YtaCtaT13061306B.1.36.270.996947
ORF1ab/nsp31595Y1595YtaCtaT976976B.1.1.70.000874
ORF1ab/nsp31595Y1595YtaCtaT372372B.1.160.140.788136
ORF1ab/nsp31595Y1595YtaCtaT314314B.1.360.045813
ORF1ab/nsp31595Y1595YtaCtaT259259B.1.1.5190.010285
ORF1ab/nsp31595Y1595YtaCtaT5151AY.200.001982
ORF1ab/nsp31595Y1595YtaCtaT3838B.1.20.000335
ORF1ab/nsp31595Y1595YtaCtaT2929B.1.1.2140.001608
ORF1ab/nsp31595Y1595YtaCtaT2828B.1.617.20.000105
ORF1ab/nsp31595Y1595YtaCtaT2626AY.40.00004
ORF1ab/nsp31595Y1595YtaCtaT2525AY.1030.000155
ORF1ab/nsp31595Y1595YtaCtaT2222B.10.000202
ORF1ab/nsp31595Y1595YtaCtaT2121B.1.1.4160.019005
ORF1ab/nsp31595Y1595YtaCtaT1616B.1.5810.150943
ORF1ab/nsp31595Y1595YtaCtaT1313AY.4.20.000282
ORF1ab/nsp31595Y1595YtaCtaT1111B.1.1770.000145
ORF1ab/nsp31595Y1595YtaCtaT1010AY.430.000044
ORF1ab/nsp31595Y1595YtaCtaT1010B.1.351.20.003026
ORF1ab/nsp31595Y1595YtaCtaT88AY.30.00008
ORF1ab/nsp31595Y1595YtaCtaT88B.1.10.000145
ORF1ab/nsp31595Y1595YtaCtaT88B.1.1600.00025
ORF1ab/nsp31595Y1595YtaCtaT88C.370.000929
ORF1ab/nsp31595Y1595YtaCtaT77AY.250.000042
ORF1ab/nsp31595Y1595YtaCtaT66AY.290.000095
ORF1ab/nsp31595Y1595YtaCtaT66B.1.2580.000399
ORF1ab/nsp31595Y1595YtaCtaT55AY.440.00003
ORF1ab/nsp31595Y1595YtaCtaT55AY.98.10.000242
ORF1ab/nsp31595Y1595YtaCtaT44AY.1020.000106
ORF1ab/nsp31595Y1595YtaCtaT44AY.1200.000149
ORF1ab/nsp31595Y1595YtaCtaT44AY.260.000113
ORF1ab/nsp31595Y1595YtaCtaT44AY.29.10.000882
ORF1ab/nsp31595Y1595YtaCtaT44B.1.1.2160.003562
ORF1ab/nsp31595Y1595YtaCtaT44B.1.1.700.001364
ORF1ab/nsp31595Y1595YtaCtaT44B.1.4060.024242
ORF1ab/nsp31595Y1595YtaCtaT44B.1.4680.022857
ORF1ab/nsp31595Y1595YtaCtaT33AY.330.0002
ORF1ab/nsp31595Y1595YtaCtaT33B.1.1.3180.000905
ORF1ab/nsp31595Y1595YtaCtaT33B.1.2210.000213
ORF1ab/nsp31595Y1595YtaCtaT33B.1.2600.010033
ORF1ab/nsp31595Y1595YtaCtaT33B.1.3190.009146
ORF1ab/nsp31595Y1595YtaCtaT33B.1.36.170.001482
ORF1ab/nsp31595Y1595YtaCtaT33B.1.4290.000071
ORF1ab/nsp31595Y1595YtaCtaT22AY.980.000158
ORF1ab/nsp31595Y1595YtaCtaT22B.1.177.310.022989
ORF1ab/nsp31595Y1595YtaCtaT22B.1.177.70.00033
ORF1ab/nsp31595Y1595YtaCtaT22B.1.2430.000139
ORF1ab/nsp31595Y1595YtaCtaT22B.1.36.160.002849
ORF1ab/nsp31595Y1595YtaCtaT22B.1.4560.006536
ORF1ab/nsp31595Y1595YtaCtaT22B.310.007463
ORF1ab/nsp31595Y1595YtaCtaT22Q.80.00033
ORF1ab/nsp31595Y1595YtaCtaT11A.20.000662
ORF1ab/nsp31595Y1595YtaCtaT11AY.1090.00074
ORF1ab/nsp31595Y1595YtaCtaT11AY.116.10.000311
ORF1ab/nsp31595Y1595YtaCtaT11AY.1170.000085
ORF1ab/nsp31595Y1595YtaCtaT11AY.120.000316
ORF1ab/nsp31595Y1595YtaCtaT11AY.140.000088
ORF1ab/nsp31595Y1595YtaCtaT11AY.34.10.00051
ORF1ab/nsp31595Y1595YtaCtaT11AY.350.000233
ORF1ab/nsp31595Y1595YtaCtaT11AY.360.000148
ORF1ab/nsp31595Y1595YtaCtaT11AY.390.000025
ORF1ab/nsp31595Y1595YtaCtaT11AY.4.2.10.000149
ORF1ab/nsp31595Y1595YtaCtaT11AY.50.000021
ORF1ab/nsp31595Y1595YtaCtaT11AY.520.000814
ORF1ab/nsp31595Y1595YtaCtaT11AY.550.000917
ORF1ab/nsp31595Y1595YtaCtaT11AY.610.000105
ORF1ab/nsp31595Y1595YtaCtaT11AY.840.000437
ORF1ab/nsp31595Y1595YtaCtaT11AY.90.000068
ORF1ab/nsp31595Y1595YtaCtaT11AY.9.10.000084
ORF1ab/nsp31595Y1595YtaCtaT11AY.99.20.000092
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.1710.003676
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.1960.005714
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.2010.02439
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.250.000569
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.3160.000925
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.330.000421
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.450.014085
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.5230.001563
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1.5250.005464
ORF1ab/nsp31595Y1595YtaCtaT11B.1.160.290.004219
ORF1ab/nsp31595Y1595YtaCtaT11B.1.160.80.001289
ORF1ab/nsp31595Y1595YtaCtaT11B.1.177.510.004566
ORF1ab/nsp31595Y1595YtaCtaT11B.1.177.810.000189
ORF1ab/nsp31595Y1595YtaCtaT11B.1.1950.005025
ORF1ab/nsp31595Y1595YtaCtaT11B.1.2400.000216
ORF1ab/nsp31595Y1595YtaCtaT11B.1.3510.00003
ORF1ab/nsp31595Y1595YtaCtaT11B.1.36.220.001208
ORF1ab/nsp31595Y1595YtaCtaT11B.1.36.280.005747
ORF1ab/nsp31595Y1595YtaCtaT11B.1.36.290.000517
ORF1ab/nsp31595Y1595YtaCtaT11B.1.36.340.021277
ORF1ab/nsp31595Y1595YtaCtaT11B.1.36.360.000602
ORF1ab/nsp31595Y1595YtaCtaT11B.1.416.10.001563
ORF1ab/nsp31595Y1595YtaCtaT11B.1.4390.005917
ORF1ab/nsp31595Y1595YtaCtaT11B.1.5820.000491
ORF1ab/nsp31595Y1595YtaCtaT11B.1.621.10.000506
ORF1ab/nsp31595Y1595YtaCtaT11B.1.6370.000073
ORF1ab/nsp31595Y1595YtaCtaT11B.1.930.000934
ORF1ab/nsp31595Y1595YtaCtaT11G.10.041667
ORF1ab/nsp31595Y1595YtaCtaT11P.10.000016
ORF1ab/nsp31595Y1595YtaCtaT11Q.30.000145
ORF1ab/nsp31595Y1595YtaCtaT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.