CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1463 | Y1463Y | Y2281Y | syn | taC | taT | 3082 | 3082 | 1 | 7106-7108 |
Details of the mutation Y1463Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 3082 | 3082 | All | 0.000589 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 865 | 865 | AY.43 | 0.003832 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 799 | 799 | B.1.1.7 | 0.000715 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 752 | 752 | B.1.617.2 | 0.002832 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 64 | 64 | AY.103 | 0.000397 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 59 | 59 | AY.4 | 0.000092 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 57 | 57 | B.1.243.2 | 0.826087 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 39 | 39 | AY.4.2 | 0.000846 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 31 | 31 | AY.46.4 | 0.0051 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 27 | 27 | B.1.1.315 | 0.228814 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 26 | 26 | B.1.1.297 | 0.058166 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 25 | 25 | AY.102 | 0.000663 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 23 | 23 | B.1.36.29 | 0.011899 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 21 | 21 | AY.44 | 0.000128 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 20 | 20 | AY.26 | 0.000566 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 20 | 20 | B.1.526 | 0.00047 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 15 | 15 | A.2.5 | 0.007485 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 15 | 15 | B.1.596 | 0.001307 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 10 | 10 | AY.54 | 0.000953 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 8 | 8 | AY.120 | 0.000297 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 7 | 7 | B.1.1 | 0.000127 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 6 | 6 | AY.39 | 0.000148 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 5 | 5 | AY.45 | 0.000608 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 5 | 5 | AY.46 | 0.00052 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 5 | 5 | AZ.2 | 0.004105 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 5 | 5 | B.1.400 | 0.002145 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.1.255 | 0.00303 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.1.268 | 0.014925 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.1.344 | 0.010753 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.1.467 | 0.019231 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.104 | 0.00369 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.270 | 0.005618 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | B.1.587 | 0.001898 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1463 | Y1463Y | taC | taT | 1 | 1 | N.5 | 0.001767 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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